HEADER DNA BINDING PROTEIN 21-MAR-02 1L8Q TITLE CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 76-399; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: DNAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSV272 KEYWDS AAA+, HELIX-TURN-HELIX, NUCLEOTIDE-BINDING, DNA BINDING, REPLICATION KEYWDS 2 INITIATION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.ERZBERGER,M.M.PIRRUCCELLO,J.M.BERGER REVDAT 4 13-NOV-24 1L8Q 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1L8Q 1 VERSN REVDAT 2 24-FEB-09 1L8Q 1 VERSN REVDAT 1 25-SEP-02 1L8Q 0 JRNL AUTH J.P.ERZBERGER,M.M.PIRRUCCELLO,J.M.BERGER JRNL TITL THE STRUCTURE OF BACTERIAL DNAA: IMPLICATIONS FOR GENERAL JRNL TITL 2 MECHANISMS UNDERLYING DNA REPLICATION INITIATION JRNL REF EMBO J. V. 21 4763 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12234917 JRNL DOI 10.1093/EMBOJ/CDF496 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 69.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.471 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.034 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2705 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3621 ; 1.165 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 3.467 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;20.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1961 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1295 ; 0.278 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.164 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.259 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.403 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1589 ; 0.583 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2559 ; 1.173 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1116 ; 1.847 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1062 ; 3.188 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 38.6076 65.4598 18.5388 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.2375 REMARK 3 T33: 0.3080 T12: -0.0120 REMARK 3 T13: 0.1055 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 1.7356 L22: 2.6233 REMARK 3 L33: 4.3345 L12: -0.9797 REMARK 3 L13: -1.4399 L23: 2.4385 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: -0.0230 S13: -0.1632 REMARK 3 S21: -0.0006 S22: 0.0283 S23: -0.1449 REMARK 3 S31: 0.0823 S32: 0.2414 S33: 0.0923 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 243 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7589 95.8764 19.9505 REMARK 3 T TENSOR REMARK 3 T11: 0.2978 T22: 0.2711 REMARK 3 T33: 0.2997 T12: -0.1387 REMARK 3 T13: 0.0064 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.7046 L22: 4.8248 REMARK 3 L33: 3.8853 L12: 1.4827 REMARK 3 L13: -1.8795 L23: -1.6048 REMARK 3 S TENSOR REMARK 3 S11: 0.2034 S12: -0.2433 S13: -0.1394 REMARK 3 S21: 0.4236 S22: -0.2179 S23: 0.1419 REMARK 3 S31: 0.0547 S32: 0.0634 S33: 0.0145 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 A 399 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1668 102.0162 4.3628 REMARK 3 T TENSOR REMARK 3 T11: 0.0151 T22: 0.6517 REMARK 3 T33: 0.3616 T12: -0.0389 REMARK 3 T13: -0.0714 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 11.4781 L22: 4.3363 REMARK 3 L33: 10.4666 L12: -0.0561 REMARK 3 L13: 4.8865 L23: 1.6590 REMARK 3 S TENSOR REMARK 3 S11: 0.7333 S12: -1.7095 S13: -0.8954 REMARK 3 S21: -0.0199 S22: -0.4084 S23: 0.8794 REMARK 3 S31: 0.1063 S32: -2.4509 S33: -0.3250 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 RESIDUE RANGE : A 400 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3692 81.0161 19.7564 REMARK 3 T TENSOR REMARK 3 T11: 0.3805 T22: 0.1971 REMARK 3 T33: 0.5357 T12: -0.1289 REMARK 3 T13: 0.1272 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: -5.6979 L22: 6.0314 REMARK 3 L33: -22.0208 L12: -1.7482 REMARK 3 L13: -12.9295 L23: 4.0968 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: -0.1075 S13: 0.7053 REMARK 3 S21: -0.8423 S22: -0.1123 S23: -0.0995 REMARK 3 S31: -0.6193 S32: -0.3820 S33: 0.0246 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0803 80.8069 15.8232 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.2808 REMARK 3 T33: 0.2113 T12: -0.0065 REMARK 3 T13: 0.0840 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.7774 L22: 2.1808 REMARK 3 L33: 0.8945 L12: 0.2825 REMARK 3 L13: -0.4036 L23: -0.3494 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.1646 S13: -0.1214 REMARK 3 S21: 0.0439 S22: 0.0035 S23: -0.2975 REMARK 3 S31: -0.0982 S32: 0.0836 S33: 0.0183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797,1.1272 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17366 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, POTASSIUM CHLORIDE, REMARK 280 HEXANEDIOL, PEG MME 2000, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 77.87600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 77.87600 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 77.87600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 77.87600 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 77.87600 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 77.87600 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 77.87600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 77.87600 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 77.87600 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 77.87600 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 77.87600 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 77.87600 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 77.87600 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 77.87600 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 77.87600 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 77.87600 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 77.87600 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 77.87600 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 77.87600 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 77.87600 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 77.87600 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 77.87600 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 77.87600 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 77.87600 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 77.87600 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 77.87600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 76 REMARK 465 LYS A 379 REMARK 465 ASP A 380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 78 24.63 81.63 REMARK 500 ASN A 107 49.90 -143.29 REMARK 500 LEU A 108 125.90 -33.49 REMARK 500 ASN A 113 114.42 -161.88 REMARK 500 ALA A 313 -78.92 -58.34 REMARK 500 ALA A 317 49.64 75.17 REMARK 500 ILE A 323 -15.69 -47.77 REMARK 500 LEU A 324 69.90 -106.60 REMARK 500 ASP A 326 33.85 -82.97 REMARK 500 LYS A 330 -9.80 54.79 REMARK 500 LYS A 359 104.53 -42.97 REMARK 500 ASP A 362 -178.27 -179.46 REMARK 500 HIS A 363 -90.95 -95.07 REMARK 500 THR A 364 -89.86 -2.77 REMARK 500 THR A 365 -77.80 -8.42 REMARK 500 LYS A 382 -85.99 -123.84 REMARK 500 LEU A 386 -71.30 -62.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 9 O REMARK 620 2 HOH A 31 O 82.8 REMARK 620 3 HOH A 38 O 157.5 81.7 REMARK 620 4 HOH A 45 O 74.2 77.6 86.6 REMARK 620 5 THR A 126 OG1 86.2 161.7 104.1 85.3 REMARK 620 6 ADP A 400 O1B 102.9 98.4 95.5 175.2 98.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 400 DBREF 1L8Q A 76 399 UNP O66659 DNAA_AQUAE 76 399 SEQADV 1L8Q MSE A 155 UNP O66659 MET 155 MODIFIED RESIDUE SEQADV 1L8Q MSE A 170 UNP O66659 MET 170 MODIFIED RESIDUE SEQADV 1L8Q MSE A 306 UNP O66659 MET 306 MODIFIED RESIDUE SEQADV 1L8Q MSE A 340 UNP O66659 MET 340 MODIFIED RESIDUE SEQRES 1 A 324 LYS ASP PHE LEU ASN PRO LYS TYR THR LEU GLU ASN PHE SEQRES 2 A 324 ILE VAL GLY GLU GLY ASN ARG LEU ALA TYR GLU VAL VAL SEQRES 3 A 324 LYS GLU ALA LEU GLU ASN LEU GLY SER LEU TYR ASN PRO SEQRES 4 A 324 ILE PHE ILE TYR GLY SER VAL GLY THR GLY LYS THR HIS SEQRES 5 A 324 LEU LEU GLN ALA ALA GLY ASN GLU ALA LYS LYS ARG GLY SEQRES 6 A 324 TYR ARG VAL ILE TYR SER SER ALA ASP ASP PHE ALA GLN SEQRES 7 A 324 ALA MSE VAL GLU HIS LEU LYS LYS GLY THR ILE ASN GLU SEQRES 8 A 324 PHE ARG ASN MSE TYR LYS SER VAL ASP LEU LEU LEU LEU SEQRES 9 A 324 ASP ASP VAL GLN PHE LEU SER GLY LYS GLU ARG THR GLN SEQRES 10 A 324 ILE GLU PHE PHE HIS ILE PHE ASN THR LEU TYR LEU LEU SEQRES 11 A 324 GLU LYS GLN ILE ILE LEU ALA SER ASP ARG HIS PRO GLN SEQRES 12 A 324 LYS LEU ASP GLY VAL SER ASP ARG LEU VAL SER ARG PHE SEQRES 13 A 324 GLU GLY GLY ILE LEU VAL GLU ILE GLU LEU ASP ASN LYS SEQRES 14 A 324 THR ARG PHE LYS ILE ILE LYS GLU LYS LEU LYS GLU PHE SEQRES 15 A 324 ASN LEU GLU LEU ARG LYS GLU VAL ILE ASP TYR LEU LEU SEQRES 16 A 324 GLU ASN THR LYS ASN VAL ARG GLU ILE GLU GLY LYS ILE SEQRES 17 A 324 LYS LEU ILE LYS LEU LYS GLY PHE GLU GLY LEU GLU ARG SEQRES 18 A 324 LYS GLU ARG LYS GLU ARG ASP LYS LEU MSE GLN ILE VAL SEQRES 19 A 324 GLU PHE VAL ALA ASN TYR TYR ALA VAL LYS VAL GLU ASP SEQRES 20 A 324 ILE LEU SER ASP LYS ARG ASN LYS ARG THR SER GLU ALA SEQRES 21 A 324 ARG LYS ILE ALA MSE TYR LEU CYS ARG LYS VAL CYS SER SEQRES 22 A 324 ALA SER LEU ILE GLU ILE ALA ARG ALA PHE LYS ARG LYS SEQRES 23 A 324 ASP HIS THR THR VAL ILE HIS ALA ILE ARG SER VAL GLU SEQRES 24 A 324 GLU GLU LYS LYS LYS ASP ARG LYS PHE LYS HIS LEU VAL SEQRES 25 A 324 GLY PHE LEU GLU LYS GLN ALA PHE ASP LYS ILE CYS MODRES 1L8Q MSE A 155 MET SELENOMETHIONINE MODRES 1L8Q MSE A 170 MET SELENOMETHIONINE MODRES 1L8Q MSE A 306 MET SELENOMETHIONINE MODRES 1L8Q MSE A 340 MET SELENOMETHIONINE HET MSE A 155 8 HET MSE A 170 8 HET MSE A 306 8 HET MSE A 340 8 HET MG A 401 1 HET ADP A 400 27 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *47(H2 O) HELIX 1 1 ASN A 94 ASN A 107 1 14 HELIX 2 2 GLY A 124 ARG A 139 1 16 HELIX 3 3 ALA A 148 GLY A 162 1 15 HELIX 4 4 THR A 163 SER A 173 1 11 HELIX 5 5 ASP A 181 SER A 186 5 6 HELIX 6 6 LYS A 188 LEU A 205 1 18 HELIX 7 7 HIS A 216 LEU A 220 5 5 HELIX 8 8 SER A 224 GLY A 233 1 10 HELIX 9 9 ASP A 242 PHE A 257 1 16 HELIX 10 10 ARG A 262 THR A 273 1 12 HELIX 11 11 ASN A 275 GLY A 290 1 16 HELIX 12 12 GLY A 290 ALA A 317 1 28 HELIX 13 13 LYS A 319 LEU A 324 1 6 HELIX 14 14 THR A 332 SER A 348 1 17 HELIX 15 15 SER A 350 PHE A 358 1 9 HELIX 16 16 THR A 364 GLU A 376 1 13 HELIX 17 17 LYS A 382 CYS A 399 1 18 SHEET 1 A 5 VAL A 143 SER A 147 0 SHEET 2 A 5 LEU A 176 ASP A 180 1 O LEU A 178 N ILE A 144 SHEET 3 A 5 GLN A 208 SER A 213 1 O ILE A 210 N LEU A 177 SHEET 4 A 5 ILE A 115 TYR A 118 1 N ILE A 115 O LEU A 211 SHEET 5 A 5 ILE A 235 GLU A 238 1 O ILE A 235 N PHE A 116 LINK C ALA A 154 N MSE A 155 1555 1555 1.34 LINK C MSE A 155 N VAL A 156 1555 1555 1.33 LINK C ASN A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N TYR A 171 1555 1555 1.33 LINK C LEU A 305 N MSE A 306 1555 1555 1.32 LINK C MSE A 306 N GLN A 307 1555 1555 1.33 LINK C ALA A 339 N MSE A 340 1555 1555 1.33 LINK C MSE A 340 N TYR A 341 1555 1555 1.33 LINK O HOH A 9 MG MG A 401 1555 1555 2.17 LINK O HOH A 31 MG MG A 401 1555 1555 2.17 LINK O HOH A 38 MG MG A 401 1555 1555 1.82 LINK O HOH A 45 MG MG A 401 1555 1555 2.10 LINK OG1 THR A 126 MG MG A 401 1555 1555 1.94 LINK O1B ADP A 400 MG MG A 401 1555 1555 1.85 CISPEP 1 ASN A 113 PRO A 114 0 0.22 SITE 1 AC1 6 HOH A 9 HOH A 31 HOH A 38 HOH A 45 SITE 2 AC1 6 THR A 126 ADP A 400 SITE 1 AC2 18 HOH A 20 HOH A 22 HOH A 31 HOH A 38 SITE 2 AC2 18 HOH A 39 ASN A 87 PHE A 88 ILE A 89 SITE 3 AC2 18 ASN A 94 GLY A 122 THR A 123 GLY A 124 SITE 4 AC2 18 LYS A 125 THR A 126 HIS A 127 ILE A 249 SITE 5 AC2 18 VAL A 276 MG A 401 CRYST1 155.752 155.752 155.752 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006420 0.00000