data_1L8U # _entry.id 1L8U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1L8U RCSB RCSB015750 WWPDB D_1000015750 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.pdb_id 2B0Q _pdbx_database_PDB_obs_spr.replace_pdb_id 1L8U _pdbx_database_PDB_obs_spr.date 2005-09-27 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1J7I ;Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type Iiia Apoenzyme ; unspecified PDB 1J7L ;Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type Iiia ADP Complex ; unspecified PDB 1J7U ;Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type Iiia Amppnp Complex ; unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1L8U _pdbx_database_status.recvd_initial_deposition_date 2002-03-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fong, D.H.' 1 'Berghuis, A.M.' 2 # _citation.id primary _citation.title 'Substrate promiscuity of an aminoglycoside antibiotic resistance enzyme via target mimicry.' _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 21 _citation.page_first 2323 _citation.page_last 2331 _citation.year 2002 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12006485 _citation.pdbx_database_id_DOI 10.1093/emboj/21.10.2323 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fong, D.H.' 1 primary 'Berghuis, A.M.' 2 # _cell.entry_id 1L8U _cell.length_a 46.357 _cell.length_b 46.357 _cell.length_c 301.613 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L8U _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;Aminoglycoside 3'-Phosphotransferase ; 30880.850 1 2.7.1.95 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 4 non-polymer syn NEOMYCIN 614.644 1 ? ? ? ? 5 water nat water 18.015 44 ? ? ? ? # _entity_keywords.entity_id 1 _entity_keywords.text transferase # _entity_name_com.entity_id 1 _entity_name_com.name ;Kanamycin kinase type III, Neomycin-Kanamycin phosphotransferase type III, APH(3')III ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER HDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELF FDLLGIKPDWEKIKYYILLDELF ; _entity_poly.pdbx_seq_one_letter_code_can ;AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER HDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELF FDLLGIKPDWEKIKYYILLDELF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 MET n 1 4 ARG n 1 5 ILE n 1 6 SER n 1 7 PRO n 1 8 GLU n 1 9 LEU n 1 10 LYS n 1 11 LYS n 1 12 LEU n 1 13 ILE n 1 14 GLU n 1 15 LYS n 1 16 TYR n 1 17 ARG n 1 18 CYS n 1 19 VAL n 1 20 LYS n 1 21 ASP n 1 22 THR n 1 23 GLU n 1 24 GLY n 1 25 MET n 1 26 SER n 1 27 PRO n 1 28 ALA n 1 29 LYS n 1 30 VAL n 1 31 TYR n 1 32 LYS n 1 33 LEU n 1 34 VAL n 1 35 GLY n 1 36 GLU n 1 37 ASN n 1 38 GLU n 1 39 ASN n 1 40 LEU n 1 41 TYR n 1 42 LEU n 1 43 LYS n 1 44 MET n 1 45 THR n 1 46 ASP n 1 47 SER n 1 48 ARG n 1 49 TYR n 1 50 LYS n 1 51 GLY n 1 52 THR n 1 53 THR n 1 54 TYR n 1 55 ASP n 1 56 VAL n 1 57 GLU n 1 58 ARG n 1 59 GLU n 1 60 LYS n 1 61 ASP n 1 62 MET n 1 63 MET n 1 64 LEU n 1 65 TRP n 1 66 LEU n 1 67 GLU n 1 68 GLY n 1 69 LYS n 1 70 LEU n 1 71 PRO n 1 72 VAL n 1 73 PRO n 1 74 LYS n 1 75 VAL n 1 76 LEU n 1 77 HIS n 1 78 PHE n 1 79 GLU n 1 80 ARG n 1 81 HIS n 1 82 ASP n 1 83 GLY n 1 84 TRP n 1 85 SER n 1 86 ASN n 1 87 LEU n 1 88 LEU n 1 89 MET n 1 90 SER n 1 91 GLU n 1 92 ALA n 1 93 ASP n 1 94 GLY n 1 95 VAL n 1 96 LEU n 1 97 CYS n 1 98 SER n 1 99 GLU n 1 100 GLU n 1 101 TYR n 1 102 GLU n 1 103 ASP n 1 104 GLU n 1 105 GLN n 1 106 SER n 1 107 PRO n 1 108 GLU n 1 109 LYS n 1 110 ILE n 1 111 ILE n 1 112 GLU n 1 113 LEU n 1 114 TYR n 1 115 ALA n 1 116 GLU n 1 117 CYS n 1 118 ILE n 1 119 ARG n 1 120 LEU n 1 121 PHE n 1 122 HIS n 1 123 SER n 1 124 ILE n 1 125 ASP n 1 126 ILE n 1 127 SER n 1 128 ASP n 1 129 CYS n 1 130 PRO n 1 131 TYR n 1 132 THR n 1 133 ASN n 1 134 SER n 1 135 LEU n 1 136 ASP n 1 137 SER n 1 138 ARG n 1 139 LEU n 1 140 ALA n 1 141 GLU n 1 142 LEU n 1 143 ASP n 1 144 TYR n 1 145 LEU n 1 146 LEU n 1 147 ASN n 1 148 ASN n 1 149 ASP n 1 150 LEU n 1 151 ALA n 1 152 ASP n 1 153 VAL n 1 154 ASP n 1 155 CYS n 1 156 GLU n 1 157 ASN n 1 158 TRP n 1 159 GLU n 1 160 GLU n 1 161 ASP n 1 162 THR n 1 163 PRO n 1 164 PHE n 1 165 LYS n 1 166 ASP n 1 167 PRO n 1 168 ARG n 1 169 GLU n 1 170 LEU n 1 171 TYR n 1 172 ASP n 1 173 PHE n 1 174 LEU n 1 175 LYS n 1 176 THR n 1 177 GLU n 1 178 LYS n 1 179 PRO n 1 180 GLU n 1 181 GLU n 1 182 GLU n 1 183 LEU n 1 184 VAL n 1 185 PHE n 1 186 SER n 1 187 HIS n 1 188 GLY n 1 189 ASP n 1 190 LEU n 1 191 GLY n 1 192 ASP n 1 193 SER n 1 194 ASN n 1 195 ILE n 1 196 PHE n 1 197 VAL n 1 198 LYS n 1 199 ASP n 1 200 GLY n 1 201 LYS n 1 202 VAL n 1 203 SER n 1 204 GLY n 1 205 PHE n 1 206 ILE n 1 207 ASP n 1 208 LEU n 1 209 GLY n 1 210 ARG n 1 211 SER n 1 212 GLY n 1 213 ARG n 1 214 ALA n 1 215 ASP n 1 216 LYS n 1 217 TRP n 1 218 TYR n 1 219 ASP n 1 220 ILE n 1 221 ALA n 1 222 PHE n 1 223 CYS n 1 224 VAL n 1 225 ARG n 1 226 SER n 1 227 ILE n 1 228 ARG n 1 229 GLU n 1 230 ASP n 1 231 ILE n 1 232 GLY n 1 233 GLU n 1 234 GLU n 1 235 GLN n 1 236 TYR n 1 237 VAL n 1 238 GLU n 1 239 LEU n 1 240 PHE n 1 241 PHE n 1 242 ASP n 1 243 LEU n 1 244 LEU n 1 245 GLY n 1 246 ILE n 1 247 LYS n 1 248 PRO n 1 249 ASP n 1 250 TRP n 1 251 GLU n 1 252 LYS n 1 253 ILE n 1 254 LYS n 1 255 TYR n 1 256 TYR n 1 257 ILE n 1 258 LEU n 1 259 LEU n 1 260 ASP n 1 261 GLU n 1 262 LEU n 1 263 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bacteria _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterococcus faecalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PPCRG6 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name SWS _struct_ref.db_code KKA3_ENTFA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER HDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELF FDLLGIKPDWEKIKYYILLDELF ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_accession P00554 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1L8U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 263 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00554 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 264 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NMY non-polymer . NEOMYCIN 'MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN' 'C23 H46 N6 O13' 614.644 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1L8U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.10 _exptl_crystal.density_Matthews 2.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.pdbx_details 'PEG 600, CHES, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-04-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.072 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.072 # _reflns.entry_id 1L8U _reflns.number_all ? _reflns.number_obs 8074 _reflns.percent_possible_obs 80.8 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 50.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.048 _reflns.pdbx_netI_over_av_sigmaI 11.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _refine.entry_id 1L8U _refine.ls_number_reflns_obs 8019 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.7 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23 _refine.ls_R_factor_R_free 0.308 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 851 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1L8U _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.38 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.54 _refine_analyze.Luzzati_sigma_a_free 0.62 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2170 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 71 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 2285 _refine_hist.d_res_high 2.7 _refine_hist.d_res_low 50 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.393 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_deg 21.9 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.7 _refine_ls_shell.d_res_low 2.87 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.291 _refine_ls_shell.percent_reflns_obs 50.1 _refine_ls_shell.R_factor_R_free 0.421 _refine_ls_shell.R_factor_R_free_error 0.045 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.number_reflns_obs 793 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1L8U _struct.title ;Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type IIIa ADP Neomycin B Complex ; _struct.pdbx_descriptor ;Aminoglycoside 3'-Phosphotransferase (E.C.2.7.1.95) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1L8U _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 6 ? TYR A 16 ? SER A 7 TYR A 17 1 ? 11 HELX_P HELX_P2 2 ARG A 48 ? LYS A 50 ? ARG A 49 LYS A 51 5 ? 3 HELX_P HELX_P3 3 ASP A 55 ? LEU A 66 ? ASP A 56 LEU A 67 1 ? 12 HELX_P HELX_P4 4 CYS A 97 ? TYR A 101 ? CYS A 98 TYR A 102 1 ? 5 HELX_P HELX_P5 5 SER A 106 ? ILE A 124 ? SER A 107 ILE A 125 1 ? 19 HELX_P HELX_P6 6 SER A 134 ? ASN A 148 ? SER A 135 ASN A 149 1 ? 15 HELX_P HELX_P7 7 ASP A 166 ? LYS A 178 ? ASP A 167 LYS A 179 1 ? 13 HELX_P HELX_P8 8 LYS A 216 ? ILE A 231 ? LYS A 217 ILE A 232 1 ? 16 HELX_P HELX_P9 9 GLU A 233 ? GLY A 245 ? GLU A 234 GLY A 246 1 ? 13 HELX_P HELX_P10 10 ASP A 249 ? GLU A 261 ? ASP A 250 GLU A 262 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 17 ? LYS A 20 ? ARG A 18 LYS A 21 A 2 LYS A 29 ? VAL A 34 ? LYS A 30 VAL A 35 A 3 ASN A 39 ? ASP A 46 ? ASN A 40 ASP A 47 A 4 TRP A 84 ? SER A 90 ? TRP A 85 SER A 91 A 5 VAL A 75 ? ARG A 80 ? VAL A 76 ARG A 81 B 1 VAL A 95 ? LEU A 96 ? VAL A 96 LEU A 97 B 2 ILE A 195 ? LYS A 198 ? ILE A 196 LYS A 199 B 3 LYS A 201 ? PHE A 205 ? LYS A 202 PHE A 206 C 1 LEU A 183 ? SER A 186 ? LEU A 184 SER A 187 C 2 GLY A 212 ? ASP A 215 ? GLY A 213 ASP A 216 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 19 ? N VAL A 20 O LYS A 32 ? O LYS A 33 A 2 3 N LEU A 33 ? N LEU A 34 O LEU A 40 ? O LEU A 41 A 3 4 N TYR A 41 ? N TYR A 42 O MET A 89 ? O MET A 90 A 4 5 O ASN A 86 ? O ASN A 87 N GLU A 79 ? N GLU A 80 B 1 2 N VAL A 95 ? N VAL A 96 O VAL A 197 ? O VAL A 198 B 2 3 N PHE A 196 ? N PHE A 197 O SER A 203 ? O SER A 204 C 1 2 N VAL A 184 ? N VAL A 185 O ALA A 214 ? O ALA A 215 # _database_PDB_matrix.entry_id 1L8U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1L8U _atom_sites.fract_transf_matrix[1][1] 0.021572 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021572 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003316 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 LYS 2 3 3 LYS LYS A . n A 1 3 MET 3 4 4 MET MET A . n A 1 4 ARG 4 5 5 ARG ARG A . n A 1 5 ILE 5 6 6 ILE ILE A . n A 1 6 SER 6 7 7 SER SER A . n A 1 7 PRO 7 8 8 PRO PRO A . n A 1 8 GLU 8 9 9 GLU GLU A . n A 1 9 LEU 9 10 10 LEU LEU A . n A 1 10 LYS 10 11 11 LYS LYS A . n A 1 11 LYS 11 12 12 LYS LYS A . n A 1 12 LEU 12 13 13 LEU LEU A . n A 1 13 ILE 13 14 14 ILE ILE A . n A 1 14 GLU 14 15 15 GLU GLU A . n A 1 15 LYS 15 16 16 LYS LYS A . n A 1 16 TYR 16 17 17 TYR TYR A . n A 1 17 ARG 17 18 18 ARG ARG A . n A 1 18 CYS 18 19 19 CYS CYS A . n A 1 19 VAL 19 20 20 VAL VAL A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 ASP 21 22 22 ASP ASP A . n A 1 22 THR 22 23 23 THR THR A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 MET 25 26 26 MET MET A . n A 1 26 SER 26 27 27 SER SER A . n A 1 27 PRO 27 28 28 PRO PRO A . n A 1 28 ALA 28 29 29 ALA ALA A . n A 1 29 LYS 29 30 30 LYS LYS A . n A 1 30 VAL 30 31 31 VAL VAL A . n A 1 31 TYR 31 32 32 TYR TYR A . n A 1 32 LYS 32 33 33 LYS LYS A . n A 1 33 LEU 33 34 34 LEU LEU A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 GLY 35 36 36 GLY GLY A . n A 1 36 GLU 36 37 37 GLU GLU A . n A 1 37 ASN 37 38 38 ASN ASN A . n A 1 38 GLU 38 39 39 GLU GLU A . n A 1 39 ASN 39 40 40 ASN ASN A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 TYR 41 42 42 TYR TYR A . n A 1 42 LEU 42 43 43 LEU LEU A . n A 1 43 LYS 43 44 44 LYS LYS A . n A 1 44 MET 44 45 45 MET MET A . n A 1 45 THR 45 46 46 THR THR A . n A 1 46 ASP 46 47 47 ASP ASP A . n A 1 47 SER 47 48 48 SER SER A . n A 1 48 ARG 48 49 49 ARG ARG A . n A 1 49 TYR 49 50 50 TYR TYR A . n A 1 50 LYS 50 51 51 LYS LYS A . n A 1 51 GLY 51 52 52 GLY GLY A . n A 1 52 THR 52 53 53 THR THR A . n A 1 53 THR 53 54 54 THR THR A . n A 1 54 TYR 54 55 55 TYR TYR A . n A 1 55 ASP 55 56 56 ASP ASP A . n A 1 56 VAL 56 57 57 VAL VAL A . n A 1 57 GLU 57 58 58 GLU GLU A . n A 1 58 ARG 58 59 59 ARG ARG A . n A 1 59 GLU 59 60 60 GLU GLU A . n A 1 60 LYS 60 61 61 LYS LYS A . n A 1 61 ASP 61 62 62 ASP ASP A . n A 1 62 MET 62 63 63 MET MET A . n A 1 63 MET 63 64 64 MET MET A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 TRP 65 66 66 TRP TRP A . n A 1 66 LEU 66 67 67 LEU LEU A . n A 1 67 GLU 67 68 68 GLU GLU A . n A 1 68 GLY 68 69 69 GLY GLY A . n A 1 69 LYS 69 70 70 LYS LYS A . n A 1 70 LEU 70 71 71 LEU LEU A . n A 1 71 PRO 71 72 72 PRO PRO A . n A 1 72 VAL 72 73 73 VAL VAL A . n A 1 73 PRO 73 74 74 PRO PRO A . n A 1 74 LYS 74 75 75 LYS LYS A . n A 1 75 VAL 75 76 76 VAL VAL A . n A 1 76 LEU 76 77 77 LEU LEU A . n A 1 77 HIS 77 78 78 HIS HIS A . n A 1 78 PHE 78 79 79 PHE PHE A . n A 1 79 GLU 79 80 80 GLU GLU A . n A 1 80 ARG 80 81 81 ARG ARG A . n A 1 81 HIS 81 82 82 HIS HIS A . n A 1 82 ASP 82 83 83 ASP ASP A . n A 1 83 GLY 83 84 84 GLY GLY A . n A 1 84 TRP 84 85 85 TRP TRP A . n A 1 85 SER 85 86 86 SER SER A . n A 1 86 ASN 86 87 87 ASN ASN A . n A 1 87 LEU 87 88 88 LEU LEU A . n A 1 88 LEU 88 89 89 LEU LEU A . n A 1 89 MET 89 90 90 MET MET A . n A 1 90 SER 90 91 91 SER SER A . n A 1 91 GLU 91 92 92 GLU GLU A . n A 1 92 ALA 92 93 93 ALA ALA A . n A 1 93 ASP 93 94 94 ASP ASP A . n A 1 94 GLY 94 95 95 GLY GLY A . n A 1 95 VAL 95 96 96 VAL VAL A . n A 1 96 LEU 96 97 97 LEU LEU A . n A 1 97 CYS 97 98 98 CYS CYS A . n A 1 98 SER 98 99 99 SER SER A . n A 1 99 GLU 99 100 100 GLU GLU A . n A 1 100 GLU 100 101 101 GLU GLU A . n A 1 101 TYR 101 102 102 TYR TYR A . n A 1 102 GLU 102 103 103 GLU GLU A . n A 1 103 ASP 103 104 104 ASP ASP A . n A 1 104 GLU 104 105 105 GLU GLU A . n A 1 105 GLN 105 106 106 GLN GLN A . n A 1 106 SER 106 107 107 SER SER A . n A 1 107 PRO 107 108 108 PRO PRO A . n A 1 108 GLU 108 109 109 GLU GLU A . n A 1 109 LYS 109 110 110 LYS LYS A . n A 1 110 ILE 110 111 111 ILE ILE A . n A 1 111 ILE 111 112 112 ILE ILE A . n A 1 112 GLU 112 113 113 GLU GLU A . n A 1 113 LEU 113 114 114 LEU LEU A . n A 1 114 TYR 114 115 115 TYR TYR A . n A 1 115 ALA 115 116 116 ALA ALA A . n A 1 116 GLU 116 117 117 GLU GLU A . n A 1 117 CYS 117 118 118 CYS CYS A . n A 1 118 ILE 118 119 119 ILE ILE A . n A 1 119 ARG 119 120 120 ARG ARG A . n A 1 120 LEU 120 121 121 LEU LEU A . n A 1 121 PHE 121 122 122 PHE PHE A . n A 1 122 HIS 122 123 123 HIS HIS A . n A 1 123 SER 123 124 124 SER SER A . n A 1 124 ILE 124 125 125 ILE ILE A . n A 1 125 ASP 125 126 126 ASP ASP A . n A 1 126 ILE 126 127 127 ILE ILE A . n A 1 127 SER 127 128 128 SER SER A . n A 1 128 ASP 128 129 129 ASP ASP A . n A 1 129 CYS 129 130 130 CYS CYS A . n A 1 130 PRO 130 131 131 PRO PRO A . n A 1 131 TYR 131 132 132 TYR TYR A . n A 1 132 THR 132 133 133 THR THR A . n A 1 133 ASN 133 134 134 ASN ASN A . n A 1 134 SER 134 135 135 SER SER A . n A 1 135 LEU 135 136 136 LEU LEU A . n A 1 136 ASP 136 137 137 ASP ASP A . n A 1 137 SER 137 138 138 SER SER A . n A 1 138 ARG 138 139 139 ARG ARG A . n A 1 139 LEU 139 140 140 LEU LEU A . n A 1 140 ALA 140 141 141 ALA ALA A . n A 1 141 GLU 141 142 142 GLU GLU A . n A 1 142 LEU 142 143 143 LEU LEU A . n A 1 143 ASP 143 144 144 ASP ASP A . n A 1 144 TYR 144 145 145 TYR TYR A . n A 1 145 LEU 145 146 146 LEU LEU A . n A 1 146 LEU 146 147 147 LEU LEU A . n A 1 147 ASN 147 148 148 ASN ASN A . n A 1 148 ASN 148 149 149 ASN ASN A . n A 1 149 ASP 149 150 150 ASP ASP A . n A 1 150 LEU 150 151 151 LEU LEU A . n A 1 151 ALA 151 152 152 ALA ALA A . n A 1 152 ASP 152 153 153 ASP ASP A . n A 1 153 VAL 153 154 154 VAL VAL A . n A 1 154 ASP 154 155 155 ASP ASP A . n A 1 155 CYS 155 156 156 CYS CYS A . n A 1 156 GLU 156 157 157 GLU GLU A . n A 1 157 ASN 157 158 158 ASN ASN A . n A 1 158 TRP 158 159 159 TRP TRP A . n A 1 159 GLU 159 160 160 GLU GLU A . n A 1 160 GLU 160 161 161 GLU GLU A . n A 1 161 ASP 161 162 162 ASP ASP A . n A 1 162 THR 162 163 163 THR THR A . n A 1 163 PRO 163 164 164 PRO PRO A . n A 1 164 PHE 164 165 165 PHE PHE A . n A 1 165 LYS 165 166 166 LYS LYS A . n A 1 166 ASP 166 167 167 ASP ASP A . n A 1 167 PRO 167 168 168 PRO PRO A . n A 1 168 ARG 168 169 169 ARG ARG A . n A 1 169 GLU 169 170 170 GLU GLU A . n A 1 170 LEU 170 171 171 LEU LEU A . n A 1 171 TYR 171 172 172 TYR TYR A . n A 1 172 ASP 172 173 173 ASP ASP A . n A 1 173 PHE 173 174 174 PHE PHE A . n A 1 174 LEU 174 175 175 LEU LEU A . n A 1 175 LYS 175 176 176 LYS LYS A . n A 1 176 THR 176 177 177 THR THR A . n A 1 177 GLU 177 178 178 GLU GLU A . n A 1 178 LYS 178 179 179 LYS LYS A . n A 1 179 PRO 179 180 180 PRO PRO A . n A 1 180 GLU 180 181 181 GLU GLU A . n A 1 181 GLU 181 182 182 GLU GLU A . n A 1 182 GLU 182 183 183 GLU GLU A . n A 1 183 LEU 183 184 184 LEU LEU A . n A 1 184 VAL 184 185 185 VAL VAL A . n A 1 185 PHE 185 186 186 PHE PHE A . n A 1 186 SER 186 187 187 SER SER A . n A 1 187 HIS 187 188 188 HIS HIS A . n A 1 188 GLY 188 189 189 GLY GLY A . n A 1 189 ASP 189 190 190 ASP ASP A . n A 1 190 LEU 190 191 191 LEU LEU A . n A 1 191 GLY 191 192 192 GLY GLY A . n A 1 192 ASP 192 193 193 ASP ASP A . n A 1 193 SER 193 194 194 SER SER A . n A 1 194 ASN 194 195 195 ASN ASN A . n A 1 195 ILE 195 196 196 ILE ILE A . n A 1 196 PHE 196 197 197 PHE PHE A . n A 1 197 VAL 197 198 198 VAL VAL A . n A 1 198 LYS 198 199 199 LYS LYS A . n A 1 199 ASP 199 200 200 ASP ASP A . n A 1 200 GLY 200 201 201 GLY GLY A . n A 1 201 LYS 201 202 202 LYS LYS A . n A 1 202 VAL 202 203 203 VAL VAL A . n A 1 203 SER 203 204 204 SER SER A . n A 1 204 GLY 204 205 205 GLY GLY A . n A 1 205 PHE 205 206 206 PHE PHE A . n A 1 206 ILE 206 207 207 ILE ILE A . n A 1 207 ASP 207 208 208 ASP ASP A . n A 1 208 LEU 208 209 209 LEU LEU A . n A 1 209 GLY 209 210 210 GLY GLY A . n A 1 210 ARG 210 211 211 ARG ARG A . n A 1 211 SER 211 212 212 SER SER A . n A 1 212 GLY 212 213 213 GLY GLY A . n A 1 213 ARG 213 214 214 ARG ARG A . n A 1 214 ALA 214 215 215 ALA ALA A . n A 1 215 ASP 215 216 216 ASP ASP A . n A 1 216 LYS 216 217 217 LYS LYS A . n A 1 217 TRP 217 218 218 TRP TRP A . n A 1 218 TYR 218 219 219 TYR TYR A . n A 1 219 ASP 219 220 220 ASP ASP A . n A 1 220 ILE 220 221 221 ILE ILE A . n A 1 221 ALA 221 222 222 ALA ALA A . n A 1 222 PHE 222 223 223 PHE PHE A . n A 1 223 CYS 223 224 224 CYS CYS A . n A 1 224 VAL 224 225 225 VAL VAL A . n A 1 225 ARG 225 226 226 ARG ARG A . n A 1 226 SER 226 227 227 SER SER A . n A 1 227 ILE 227 228 228 ILE ILE A . n A 1 228 ARG 228 229 229 ARG ARG A . n A 1 229 GLU 229 230 230 GLU GLU A . n A 1 230 ASP 230 231 231 ASP ASP A . n A 1 231 ILE 231 232 232 ILE ILE A . n A 1 232 GLY 232 233 233 GLY GLY A . n A 1 233 GLU 233 234 234 GLU GLU A . n A 1 234 GLU 234 235 235 GLU GLU A . n A 1 235 GLN 235 236 236 GLN GLN A . n A 1 236 TYR 236 237 237 TYR TYR A . n A 1 237 VAL 237 238 238 VAL VAL A . n A 1 238 GLU 238 239 239 GLU GLU A . n A 1 239 LEU 239 240 240 LEU LEU A . n A 1 240 PHE 240 241 241 PHE PHE A . n A 1 241 PHE 241 242 242 PHE PHE A . n A 1 242 ASP 242 243 243 ASP ASP A . n A 1 243 LEU 243 244 244 LEU LEU A . n A 1 244 LEU 244 245 245 LEU LEU A . n A 1 245 GLY 245 246 246 GLY GLY A . n A 1 246 ILE 246 247 247 ILE ILE A . n A 1 247 LYS 247 248 248 LYS LYS A . n A 1 248 PRO 248 249 249 PRO PRO A . n A 1 249 ASP 249 250 250 ASP ASP A . n A 1 250 TRP 250 251 251 TRP TRP A . n A 1 251 GLU 251 252 252 GLU GLU A . n A 1 252 LYS 252 253 253 LYS LYS A . n A 1 253 ILE 253 254 254 ILE ILE A . n A 1 254 LYS 254 255 255 LYS LYS A . n A 1 255 TYR 255 256 256 TYR TYR A . n A 1 256 TYR 256 257 257 TYR TYR A . n A 1 257 ILE 257 258 258 ILE ILE A . n A 1 258 LEU 258 259 259 LEU LEU A . n A 1 259 LEU 259 260 260 LEU LEU A . n A 1 260 ASP 260 261 261 ASP ASP A . n A 1 261 GLU 261 262 262 GLU GLU A . n A 1 262 LEU 262 263 263 LEU LEU A . n A 1 263 PHE 263 264 264 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 301 301 MG MG2 A . C 2 MG 1 302 302 MG MG2 A . D 3 ADP 1 300 300 ADP ADP ? . E 4 NMY 1 305 305 NMY NMY ? . F 5 HOH 1 501 501 HOH WAT ? . F 5 HOH 2 502 502 HOH WAT ? . F 5 HOH 3 503 503 HOH WAT ? . F 5 HOH 4 504 504 HOH WAT ? . F 5 HOH 5 505 505 HOH WAT ? . F 5 HOH 6 506 506 HOH WAT ? . F 5 HOH 7 507 507 HOH WAT ? . F 5 HOH 8 508 508 HOH WAT ? . F 5 HOH 9 509 509 HOH WAT ? . F 5 HOH 10 510 510 HOH WAT ? . F 5 HOH 11 511 511 HOH WAT ? . F 5 HOH 12 512 512 HOH WAT ? . F 5 HOH 13 513 513 HOH WAT ? . F 5 HOH 14 514 514 HOH WAT ? . F 5 HOH 15 515 515 HOH WAT ? . F 5 HOH 16 516 516 HOH WAT ? . F 5 HOH 17 517 517 HOH WAT ? . F 5 HOH 18 518 518 HOH WAT ? . F 5 HOH 19 519 519 HOH WAT ? . F 5 HOH 20 520 520 HOH WAT ? . F 5 HOH 21 521 521 HOH WAT ? . F 5 HOH 22 522 522 HOH WAT ? . F 5 HOH 23 523 523 HOH WAT ? . F 5 HOH 24 524 524 HOH WAT ? . F 5 HOH 25 525 525 HOH WAT ? . F 5 HOH 26 526 526 HOH WAT ? . F 5 HOH 27 527 527 HOH WAT ? . F 5 HOH 28 528 528 HOH WAT ? . F 5 HOH 29 529 529 HOH WAT ? . F 5 HOH 30 530 530 HOH WAT ? . F 5 HOH 31 531 531 HOH WAT ? . F 5 HOH 32 532 532 HOH WAT ? . F 5 HOH 33 533 533 HOH WAT ? . F 5 HOH 34 534 534 HOH WAT ? . F 5 HOH 35 535 535 HOH WAT ? . F 5 HOH 36 536 536 HOH WAT ? . F 5 HOH 37 537 537 HOH WAT ? . F 5 HOH 38 538 538 HOH WAT ? . F 5 HOH 39 539 539 HOH WAT ? . F 5 HOH 40 540 540 HOH WAT ? . F 5 HOH 41 541 541 HOH WAT ? . F 5 HOH 42 542 542 HOH WAT ? . F 5 HOH 43 543 543 HOH WAT ? . F 5 HOH 44 544 544 HOH WAT ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-06-19 2 'Structure model' 1 1 2005-09-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data collection' . ? 1 SCALEPACK 'data reduction' . ? 2 CNS 'model building' . ? 3 CNS refinement . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 SG _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 CYS _pdbx_validate_symm_contact.auth_seq_id_1 19 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 SG _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 CYS _pdbx_validate_symm_contact.auth_seq_id_2 156 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_643 _pdbx_validate_symm_contact.dist 1.81 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 4 ? ? 66.85 -142.20 2 1 ARG A 5 ? ? -155.63 -105.10 3 1 THR A 23 ? ? -154.95 19.40 4 1 MET A 26 ? ? -54.77 -5.20 5 1 LEU A 34 ? ? -108.37 75.78 6 1 GLU A 39 ? ? -179.25 -165.88 7 1 LYS A 51 ? ? -42.57 152.17 8 1 TYR A 102 ? ? -145.89 30.42 9 1 GLU A 105 ? ? 72.08 -135.07 10 1 SER A 107 ? ? -153.41 41.59 11 1 HIS A 123 ? ? -58.55 -7.75 12 1 ASP A 150 ? ? 47.18 28.79 13 1 CYS A 156 ? ? -92.73 36.15 14 1 TRP A 159 ? ? -54.18 173.17 15 1 GLU A 161 ? ? 68.74 -13.81 16 1 ASP A 162 ? ? -94.97 -78.85 17 1 THR A 163 ? ? -5.14 100.32 18 1 VAL A 185 ? ? -129.63 -169.77 19 1 ASP A 190 ? ? -166.87 58.25 20 1 ASP A 200 ? ? 54.39 16.65 21 1 ASP A 208 ? ? 61.48 64.92 22 1 ALA A 215 ? ? 178.39 164.51 23 1 ASP A 250 ? ? -107.26 68.84 24 1 TRP A 251 ? ? -39.33 -20.08 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ILE 6 ? CG1 ? A ILE 5 CG1 2 1 Y 0 A ILE 6 ? CD1 ? A ILE 5 CD1 3 1 Y 0 A LYS 11 ? CD ? A LYS 10 CD 4 1 Y 0 A LYS 11 ? CE ? A LYS 10 CE 5 1 Y 0 A LYS 11 ? NZ ? A LYS 10 NZ 6 1 Y 0 A LEU 13 ? CD1 ? A LEU 12 CD1 7 1 Y 0 A LEU 13 ? CD2 ? A LEU 12 CD2 8 1 Y 0 A ILE 14 ? CG1 ? A ILE 13 CG1 9 1 Y 0 A ILE 14 ? CG2 ? A ILE 13 CG2 10 1 Y 0 A ILE 14 ? CD1 ? A ILE 13 CD1 11 1 Y 0 A LYS 16 ? CG ? A LYS 15 CG 12 1 Y 0 A LYS 16 ? CD ? A LYS 15 CD 13 1 Y 0 A LYS 16 ? CE ? A LYS 15 CE 14 1 Y 0 A LYS 30 ? CD ? A LYS 29 CD 15 1 Y 0 A LYS 30 ? CE ? A LYS 29 CE 16 1 Y 0 A LYS 30 ? NZ ? A LYS 29 NZ 17 1 Y 0 A LYS 51 ? CB ? A LYS 50 CB 18 1 Y 0 A LYS 51 ? CG ? A LYS 50 CG 19 1 Y 0 A LYS 51 ? CD ? A LYS 50 CD 20 1 Y 0 A LYS 51 ? CE ? A LYS 50 CE 21 1 Y 0 A LYS 51 ? NZ ? A LYS 50 NZ 22 1 Y 0 A ARG 81 ? CG ? A ARG 80 CG 23 1 Y 0 A ARG 81 ? CD ? A ARG 80 CD 24 1 Y 0 A ARG 81 ? NE ? A ARG 80 NE 25 1 Y 0 A GLU 103 ? CB ? A GLU 102 CB 26 1 Y 0 A GLU 103 ? CG ? A GLU 102 CG 27 1 Y 0 A GLU 103 ? CD ? A GLU 102 CD 28 1 Y 0 A GLU 103 ? OE1 ? A GLU 102 OE1 29 1 Y 0 A GLU 103 ? OE2 ? A GLU 102 OE2 30 1 Y 0 A ASP 104 ? CB ? A ASP 103 CB 31 1 Y 0 A ASP 104 ? CG ? A ASP 103 CG 32 1 Y 0 A ASP 104 ? OD1 ? A ASP 103 OD1 33 1 Y 0 A ASP 104 ? OD2 ? A ASP 103 OD2 34 1 Y 0 A GLU 105 ? CB ? A GLU 104 CB 35 1 Y 0 A GLU 105 ? CG ? A GLU 104 CG 36 1 Y 0 A GLU 105 ? CD ? A GLU 104 CD 37 1 Y 0 A GLU 105 ? OE1 ? A GLU 104 OE1 38 1 Y 0 A GLU 105 ? OE2 ? A GLU 104 OE2 39 1 Y 0 A GLN 106 ? OE1 ? A GLN 105 OE1 40 1 Y 0 A GLN 106 ? NE2 ? A GLN 105 NE2 41 1 Y 0 A ILE 125 ? CG1 ? A ILE 124 CG1 42 1 Y 0 A ILE 125 ? CG2 ? A ILE 124 CG2 43 1 Y 0 A ILE 125 ? CD1 ? A ILE 124 CD1 44 1 Y 0 A SER 128 ? CB ? A SER 127 CB 45 1 Y 0 A SER 128 ? OG ? A SER 127 OG 46 1 Y 0 A GLU 235 ? CG ? A GLU 234 CG 47 1 Y 0 A GLU 235 ? CD ? A GLU 234 CD 48 1 Y 0 A GLU 235 ? OE1 ? A GLU 234 OE1 49 1 Y 0 A GLU 235 ? OE2 ? A GLU 234 OE2 50 1 Y 0 A LYS 255 ? CD ? A LYS 254 CD 51 1 Y 0 A LYS 255 ? CE ? A LYS 254 CE 52 1 Y 0 A LYS 255 ? NZ ? A LYS 254 NZ 53 1 N 1 . ADP 300 ? "O5'" ? D ADP 1 "O5'" 54 1 N 1 . ADP 300 ? "C5'" ? D ADP 1 "C5'" 55 1 N 1 . ADP 300 ? "C4'" ? D ADP 1 "C4'" 56 1 N 1 . ADP 300 ? "O4'" ? D ADP 1 "O4'" 57 1 N 1 . ADP 300 ? "C3'" ? D ADP 1 "C3'" 58 1 N 1 . ADP 300 ? "O3'" ? D ADP 1 "O3'" 59 1 N 1 . ADP 300 ? "C2'" ? D ADP 1 "C2'" 60 1 N 1 . ADP 300 ? "O2'" ? D ADP 1 "O2'" 61 1 N 1 . ADP 300 ? "C1'" ? D ADP 1 "C1'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 0 A ALA 2 ? A ALA 1 2 1 Y 0 A LYS 3 ? A LYS 2 3 1 Y 0 A MET 4 ? A MET 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "ADENOSINE-5'-DIPHOSPHATE" ADP 4 NEOMYCIN NMY 5 water HOH #