HEADER LYASE 22-MAR-02 1L8X TITLE CRYSTAL STRUCTURE OF FERROCHELATASE FROM THE YEAST, SACCHAROMYCES TITLE 2 CEREVISIAE, WITH COBALT(II) AS THE SUBSTRATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROCHELATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTOHEME FERRO-LYASE, HEME SYNTHETASE; COMPND 5 EC: 4.99.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HEMZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FERROCHELATASE, HEME BIOSYNTHESIS, PROTOHEME, FERRO-LYASE, PORPHYRIN KEYWDS 2 METALLATION, COBALT, MITOCHONDRIAL INNER MEMBRANE PROTEIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,D.LECEROF,M.GORA,G.SILVEGREN,R.LABBE-BOIS,M.HANSSON,S.AL- AUTHOR 2 KARADAGHI REVDAT 4 16-AUG-23 1L8X 1 REMARK LINK REVDAT 3 11-OCT-17 1L8X 1 REMARK REVDAT 2 24-FEB-09 1L8X 1 VERSN REVDAT 1 20-NOV-02 1L8X 0 JRNL AUTH T.KARLBERG,D.LECEROF,M.GORA,G.SILVEGREN,R.LABBE-BOIS, JRNL AUTH 2 M.HANSSON,S.AL-KARADAGHI JRNL TITL METAL BINDING TO SACCHAROMYCES CEREVISIAE FERROCHELATASE JRNL REF BIOCHEMISTRY V. 41 13499 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12427010 JRNL DOI 10.1021/BI0260785 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 22973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT USING FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2297 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 24.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 197 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.59 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.220 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9678 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 22.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1HRK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000, 2-PROPANOL, TRIS-HCL, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 32 REMARK 465 ALA A 33 REMARK 465 GLN A 34 REMARK 465 LYS A 35 REMARK 465 ARG A 36 REMARK 465 SER A 392 REMARK 465 THR A 393 REMARK 465 ASN B 32 REMARK 465 ALA B 33 REMARK 465 GLN B 34 REMARK 465 LYS B 35 REMARK 465 ARG B 36 REMARK 465 SER B 37 REMARK 465 SER B 392 REMARK 465 THR B 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 71 CB SER A 72 1.79 REMARK 500 O THR A 78 N ALA A 80 2.06 REMARK 500 CG MET B 46 OH TYR B 163 2.14 REMARK 500 O LYS B 139 N LEU B 141 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 70 N PRO A 70 CA 0.136 REMARK 500 GLU B 314 N GLU B 314 CA -0.130 REMARK 500 GLU B 314 CA GLU B 314 CB -0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 70 C - N - CD ANGL. DEV. = -22.7 DEGREES REMARK 500 PRO A 70 CA - N - CD ANGL. DEV. = -8.9 DEGREES REMARK 500 PRO A 70 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 PRO A 70 CA - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 SER A 72 C - N - CA ANGL. DEV. = -25.6 DEGREES REMARK 500 ALA A 73 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 TYR A 75 C - N - CA ANGL. DEV. = -16.8 DEGREES REMARK 500 TYR A 75 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 TYR A 75 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 LYS A 77 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 GLU B 54 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 LEU B 62 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU B 314 N - CA - CB ANGL. DEV. = -14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 150.91 172.05 REMARK 500 PHE A 63 20.01 -66.96 REMARK 500 LEU A 68 -61.40 -155.81 REMARK 500 ILE A 69 -103.42 -42.79 REMARK 500 PRO A 70 -137.19 -76.39 REMARK 500 SER A 72 -89.86 154.57 REMARK 500 ALA A 73 96.38 41.72 REMARK 500 LYS A 74 -16.51 73.56 REMARK 500 THR A 78 -129.37 -64.27 REMARK 500 ILE A 79 -31.95 5.12 REMARK 500 ALA A 80 -73.70 -60.40 REMARK 500 TYR A 82 -18.31 -44.15 REMARK 500 CYS A 123 75.68 -116.54 REMARK 500 ALA A 127 -93.30 3.46 REMARK 500 THR A 170 -84.75 -119.29 REMARK 500 ASP A 186 55.52 -161.54 REMARK 500 ARG A 189 109.76 -24.03 REMARK 500 TRP A 199 61.17 -160.15 REMARK 500 GLU A 211 -67.67 73.40 REMARK 500 GLU A 219 39.21 -88.49 REMARK 500 PRO A 221 -74.35 -21.14 REMARK 500 GLN A 222 -51.69 134.07 REMARK 500 PRO A 223 1.81 -66.32 REMARK 500 PHE A 265 52.32 27.08 REMARK 500 ALA A 285 81.47 84.82 REMARK 500 LYS A 330 -38.59 -30.19 REMARK 500 ASN A 340 -114.84 51.71 REMARK 500 ASN A 342 118.75 -37.62 REMARK 500 GLN A 358 1.90 -67.22 REMARK 500 PRO A 379 -169.74 -77.18 REMARK 500 VAL B 52 -19.74 -34.03 REMARK 500 THR B 55 -83.90 -54.60 REMARK 500 ASP B 57 -49.87 149.06 REMARK 500 TYR B 75 45.17 -140.74 REMARK 500 PRO B 89 -76.74 -52.22 REMARK 500 ALA B 127 -148.18 26.89 REMARK 500 LYS B 139 -102.53 -23.12 REMARK 500 PRO B 140 75.80 -42.67 REMARK 500 GLN B 162 20.58 -79.36 REMARK 500 THR B 170 -85.77 -111.43 REMARK 500 ARG B 189 47.08 71.86 REMARK 500 ARG B 198 152.48 174.82 REMARK 500 TRP B 199 57.09 -164.21 REMARK 500 PRO B 223 -5.13 -55.24 REMARK 500 SER B 236 -177.95 -65.36 REMARK 500 GLN B 274 -156.66 -114.62 REMARK 500 SER B 275 -35.07 62.57 REMARK 500 GLN B 276 165.19 -26.48 REMARK 500 PRO B 305 43.81 -68.21 REMARK 500 HIS B 312 -162.66 -172.43 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 87 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 502 DBREF 1L8X A 32 393 UNP P16622 HEMH_YEAST 32 393 DBREF 1L8X B 32 393 UNP P16622 HEMH_YEAST 32 393 SEQRES 1 A 362 ASN ALA GLN LYS ARG SER PRO THR GLY ILE VAL LEU MET SEQRES 2 A 362 ASN MET GLY GLY PRO SER LYS VAL GLU GLU THR TYR ASP SEQRES 3 A 362 PHE LEU TYR GLN LEU PHE ALA ASP ASN ASP LEU ILE PRO SEQRES 4 A 362 ILE SER ALA LYS TYR GLN LYS THR ILE ALA LYS TYR ILE SEQRES 5 A 362 ALA LYS PHE ARG THR PRO LYS ILE GLU LYS GLN TYR ARG SEQRES 6 A 362 GLU ILE GLY GLY GLY SER PRO ILE ARG LYS TRP SER GLU SEQRES 7 A 362 TYR GLN ALA THR GLU VAL CYS LYS ILE LEU ASP LYS THR SEQRES 8 A 362 CYS PRO GLU THR ALA PRO HIS LYS PRO TYR VAL ALA PHE SEQRES 9 A 362 ARG TYR ALA LYS PRO LEU THR ALA GLU THR TYR LYS GLN SEQRES 10 A 362 MET LEU LYS ASP GLY VAL LYS LYS ALA VAL ALA PHE SER SEQRES 11 A 362 GLN TYR PRO HIS PHE SER TYR SER THR THR GLY SER SER SEQRES 12 A 362 ILE ASN GLU LEU TRP ARG GLN ILE LYS ALA LEU ASP SER SEQRES 13 A 362 GLU ARG SER ILE SER TRP SER VAL ILE ASP ARG TRP PRO SEQRES 14 A 362 THR ASN GLU GLY LEU ILE LYS ALA PHE SER GLU ASN ILE SEQRES 15 A 362 THR LYS LYS LEU GLN GLU PHE PRO GLN PRO VAL ARG ASP SEQRES 16 A 362 LYS VAL VAL LEU LEU PHE SER ALA HIS SER LEU PRO MET SEQRES 17 A 362 ASP VAL VAL ASN THR GLY ASP ALA TYR PRO ALA GLU VAL SEQRES 18 A 362 ALA ALA THR VAL TYR ASN ILE MET GLN LYS LEU LYS PHE SEQRES 19 A 362 LYS ASN PRO TYR ARG LEU VAL TRP GLN SER GLN VAL GLY SEQRES 20 A 362 PRO LYS PRO TRP LEU GLY ALA GLN THR ALA GLU ILE ALA SEQRES 21 A 362 GLU PHE LEU GLY PRO LYS VAL ASP GLY LEU MET PHE ILE SEQRES 22 A 362 PRO ILE ALA PHE THR SER ASP HIS ILE GLU THR LEU HIS SEQRES 23 A 362 GLU ILE ASP LEU GLY VAL ILE GLY GLU SER GLU TYR LYS SEQRES 24 A 362 ASP LYS PHE LYS ARG CYS GLU SER LEU ASN GLY ASN GLN SEQRES 25 A 362 THR PHE ILE GLU GLY MET ALA ASP LEU VAL LYS SER HIS SEQRES 26 A 362 LEU GLN SER ASN GLN LEU TYR SER ASN GLN LEU PRO LEU SEQRES 27 A 362 ASP PHE ALA LEU GLY LYS SER ASN ASP PRO VAL LYS ASP SEQRES 28 A 362 LEU SER LEU VAL PHE GLY ASN HIS GLU SER THR SEQRES 1 B 362 ASN ALA GLN LYS ARG SER PRO THR GLY ILE VAL LEU MET SEQRES 2 B 362 ASN MET GLY GLY PRO SER LYS VAL GLU GLU THR TYR ASP SEQRES 3 B 362 PHE LEU TYR GLN LEU PHE ALA ASP ASN ASP LEU ILE PRO SEQRES 4 B 362 ILE SER ALA LYS TYR GLN LYS THR ILE ALA LYS TYR ILE SEQRES 5 B 362 ALA LYS PHE ARG THR PRO LYS ILE GLU LYS GLN TYR ARG SEQRES 6 B 362 GLU ILE GLY GLY GLY SER PRO ILE ARG LYS TRP SER GLU SEQRES 7 B 362 TYR GLN ALA THR GLU VAL CYS LYS ILE LEU ASP LYS THR SEQRES 8 B 362 CYS PRO GLU THR ALA PRO HIS LYS PRO TYR VAL ALA PHE SEQRES 9 B 362 ARG TYR ALA LYS PRO LEU THR ALA GLU THR TYR LYS GLN SEQRES 10 B 362 MET LEU LYS ASP GLY VAL LYS LYS ALA VAL ALA PHE SER SEQRES 11 B 362 GLN TYR PRO HIS PHE SER TYR SER THR THR GLY SER SER SEQRES 12 B 362 ILE ASN GLU LEU TRP ARG GLN ILE LYS ALA LEU ASP SER SEQRES 13 B 362 GLU ARG SER ILE SER TRP SER VAL ILE ASP ARG TRP PRO SEQRES 14 B 362 THR ASN GLU GLY LEU ILE LYS ALA PHE SER GLU ASN ILE SEQRES 15 B 362 THR LYS LYS LEU GLN GLU PHE PRO GLN PRO VAL ARG ASP SEQRES 16 B 362 LYS VAL VAL LEU LEU PHE SER ALA HIS SER LEU PRO MET SEQRES 17 B 362 ASP VAL VAL ASN THR GLY ASP ALA TYR PRO ALA GLU VAL SEQRES 18 B 362 ALA ALA THR VAL TYR ASN ILE MET GLN LYS LEU LYS PHE SEQRES 19 B 362 LYS ASN PRO TYR ARG LEU VAL TRP GLN SER GLN VAL GLY SEQRES 20 B 362 PRO LYS PRO TRP LEU GLY ALA GLN THR ALA GLU ILE ALA SEQRES 21 B 362 GLU PHE LEU GLY PRO LYS VAL ASP GLY LEU MET PHE ILE SEQRES 22 B 362 PRO ILE ALA PHE THR SER ASP HIS ILE GLU THR LEU HIS SEQRES 23 B 362 GLU ILE ASP LEU GLY VAL ILE GLY GLU SER GLU TYR LYS SEQRES 24 B 362 ASP LYS PHE LYS ARG CYS GLU SER LEU ASN GLY ASN GLN SEQRES 25 B 362 THR PHE ILE GLU GLY MET ALA ASP LEU VAL LYS SER HIS SEQRES 26 B 362 LEU GLN SER ASN GLN LEU TYR SER ASN GLN LEU PRO LEU SEQRES 27 B 362 ASP PHE ALA LEU GLY LYS SER ASN ASP PRO VAL LYS ASP SEQRES 28 B 362 LEU SER LEU VAL PHE GLY ASN HIS GLU SER THR HET CO A 501 1 HET CO B 502 1 HETNAM CO COBALT (II) ION FORMUL 3 CO 2(CO 2+) FORMUL 5 HOH *9(H2 O) HELIX 1 1 LYS A 51 GLU A 53 5 3 HELIX 2 2 GLU A 54 PHE A 63 1 10 HELIX 3 3 ILE A 79 ILE A 98 1 20 HELIX 4 4 PRO A 103 CYS A 123 1 21 HELIX 5 5 PRO A 124 ALA A 127 5 4 HELIX 6 6 LEU A 141 LYS A 151 1 11 HELIX 7 7 THR A 170 ASP A 186 1 17 HELIX 8 8 ASN A 202 GLN A 218 1 17 HELIX 9 9 VAL A 224 VAL A 228 5 5 HELIX 10 10 PRO A 238 ASN A 243 1 6 HELIX 11 11 ALA A 247 LEU A 263 1 17 HELIX 12 12 GLN A 286 GLY A 295 1 10 HELIX 13 13 HIS A 312 HIS A 317 1 6 HELIX 14 14 TYR A 329 ASP A 331 5 3 HELIX 15 15 ASN A 342 GLN A 358 1 17 HELIX 16 16 GLN A 366 GLY A 374 1 9 HELIX 17 17 ASP A 382 PHE A 387 1 6 HELIX 18 18 GLU B 54 ALA B 64 1 11 HELIX 19 19 TYR B 75 TYR B 95 1 21 HELIX 20 20 PRO B 103 CYS B 123 1 21 HELIX 21 21 PRO B 124 ALA B 127 5 4 HELIX 22 22 LEU B 141 ASP B 152 1 12 HELIX 23 23 THR B 170 ASP B 186 1 17 HELIX 24 24 ASN B 202 LEU B 217 1 16 HELIX 25 25 GLN B 218 PHE B 220 5 3 HELIX 26 26 PRO B 221 ASP B 226 1 6 HELIX 27 27 PRO B 238 ASN B 243 1 6 HELIX 28 28 ALA B 247 LEU B 263 1 17 HELIX 29 29 GLN B 286 GLY B 295 1 10 HELIX 30 30 PRO B 296 VAL B 298 5 3 HELIX 31 31 ASN B 342 GLN B 358 1 17 HELIX 32 32 GLN B 366 GLY B 374 1 9 HELIX 33 33 ASP B 382 PHE B 387 1 6 SHEET 1 A 4 HIS A 129 PHE A 135 0 SHEET 2 A 4 THR A 39 ASN A 45 1 N LEU A 43 O TYR A 132 SHEET 3 A 4 LYS A 156 SER A 161 1 O LYS A 156 N GLY A 40 SHEET 4 A 4 SER A 192 ILE A 196 1 O SER A 194 N ALA A 159 SHEET 1 B 4 TYR A 269 GLN A 274 0 SHEET 2 B 4 VAL A 229 HIS A 235 1 N PHE A 232 O VAL A 272 SHEET 3 B 4 LEU A 301 ILE A 304 1 O MET A 302 N LEU A 231 SHEET 4 B 4 PHE A 333 ARG A 335 1 O LYS A 334 N LEU A 301 SHEET 1 C 4 HIS B 129 PHE B 135 0 SHEET 2 C 4 THR B 39 ASN B 45 1 N LEU B 43 O ALA B 134 SHEET 3 C 4 LYS B 156 SER B 161 1 O PHE B 160 N VAL B 42 SHEET 4 C 4 SER B 192 ILE B 196 1 O SER B 192 N ALA B 157 SHEET 1 D 4 TYR B 269 GLN B 274 0 SHEET 2 D 4 VAL B 229 HIS B 235 1 N PHE B 232 O ARG B 270 SHEET 3 D 4 LEU B 301 ILE B 304 1 O MET B 302 N LEU B 231 SHEET 4 D 4 PHE B 333 ARG B 335 1 O LYS B 334 N LEU B 301 LINK NE2 HIS A 235 CO CO A 501 1555 1555 2.02 LINK NE2 HIS B 235 CO CO B 502 1555 1555 1.87 CISPEP 1 LYS A 139 PRO A 140 0 -1.13 SITE 1 AC1 1 HIS A 235 SITE 1 AC2 2 HIS B 235 GLU B 314 CRYST1 84.380 96.660 120.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008285 0.00000