HEADER DNA BINDING PROTEIN 22-MAR-02 1L8Z TITLE SOLUTION STRUCTURE OF HMG BOX 5 IN HUMAN UPSTREAM BINDING FACTOR CAVEAT 1L8Z THERE ARE SEVERAL CHIRALITY ERRORS IN CHAIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPSTREAM BINDING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG BOX 5 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSUBF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS HUBF, HMG BOX 5, DNA BINDING DOMAIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR W.YANG,Y.XU,J.WU,W.ZENG,Y.SHI REVDAT 6 29-MAY-24 1L8Z 1 REMARK REVDAT 5 21-DEC-22 1L8Z 1 SEQADV REVDAT 4 23-FEB-22 1L8Z 1 REMARK SEQADV REVDAT 3 24-FEB-09 1L8Z 1 VERSN REVDAT 2 24-JUN-03 1L8Z 1 JRNL REVDAT 1 05-JUN-02 1L8Z 0 JRNL AUTH W.YANG,Y.XU,J.WU,W.ZENG,Y.SHI JRNL TITL SOLUTION STRUCTURE AND DNA BINDING PROPERTY OF THE FIFTH HMG JRNL TITL 2 BOX DOMAIN IN COMPARISON WITH THE FIRST HMG BOX DOMAIN IN JRNL TITL 3 HUMAN UPSTREAM BINDING FACTOR JRNL REF BIOCHEMISTRY V. 42 1930 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12590579 JRNL DOI 10.1021/BI026372X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPP, CNS REMARK 3 AUTHORS : F.DELAGIO AND A.BAX (NMRPIPP), A.T.BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON THE TOTAL NUMBER CONSTRAINTS OF 1220, REMARK 3 INCLUDING 1098 NOE-DERIVED DISTANCE CONSTRAINTS, 104 DIHEDRAL REMARK 3 ANGLE CONSTRAINTS, 18 HYDROGEN BOND CONSTRAINTS. REMARK 3 NO PEPTIDE BOND LINKING BETWEEN RESIDUES 82 AND 83 RESULTS FROM REMARK 3 DISORDER IN THE TAIL REGION OF THE PROTEIN AND LACK OF RESTRAINTS. REMARK 4 REMARK 4 1L8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015755. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 45 MM NAPO4 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM HUBF HMG BOX 5, U-15N, 13C; REMARK 210 45MM NAPO4; 3MM HUBF HMG BOX 5, REMARK 210 U-15N, 13C; 45MM NAPO4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, CNS 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 85 REMARK 465 HIS A 86 REMARK 465 HIS A 87 REMARK 465 HIS A 88 REMARK 465 HIS A 89 REMARK 465 HIS A 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 RES CSSEQI ATOMS REMARK 470 GLU A 84 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA SER A 79 N SER A 80 0.69 REMARK 500 HD3 LYS A 2 HD3 PRO A 4 1.19 REMARK 500 HB3 LYS A 81 HB2 LEU A 83 1.27 REMARK 500 HB2 LYS A 81 HE2 LYS A 82 1.27 REMARK 500 HA ALA A 72 HB3 ALA A 75 1.27 REMARK 500 HB1 ALA A 10 HZ3 TRP A 41 1.28 REMARK 500 HB3 SER A 80 H LYS A 81 1.29 REMARK 500 HB2 LYS A 2 HA LEU A 67 1.30 REMARK 500 C ALA A 75 H ALA A 76 1.30 REMARK 500 HA ALA A 75 HB2 SER A 79 1.34 REMARK 500 HG2 PRO A 7 HA GLN A 60 1.35 REMARK 500 OG SER A 80 HZ3 LYS A 82 1.44 REMARK 500 O SER A 68 H ARG A 71 1.48 REMARK 500 O PRO A 74 HB3 SER A 80 1.55 REMARK 500 O ASP A 29 H LYS A 32 1.56 REMARK 500 HB2 LYS A 82 N LEU A 83 1.56 REMARK 500 HA SER A 79 N SER A 80 1.57 REMARK 500 O MET A 39 HD21 ASN A 43 1.57 REMARK 500 O PRO A 74 HB2 SER A 80 1.59 REMARK 500 O PRO A 74 CA ALA A 76 1.83 REMARK 500 O PRO A 74 N ALA A 76 1.90 REMARK 500 O PRO A 74 CB SER A 80 1.96 REMARK 500 C PRO A 74 O ALA A 76 1.97 REMARK 500 O ASN A 78 O SER A 80 1.98 REMARK 500 C PRO A 74 N ALA A 76 2.02 REMARK 500 O LYS A 81 CD2 LEU A 83 2.07 REMARK 500 O ALA A 72 CB ALA A 76 2.13 REMARK 500 CB SER A 80 NZ LYS A 82 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 1 C LYS A 2 N -0.162 REMARK 500 LYS A 2 CA LYS A 2 CB -0.145 REMARK 500 PRO A 4 CD PRO A 4 N -0.132 REMARK 500 PRO A 4 CA PRO A 4 C -0.177 REMARK 500 GLU A 5 N GLU A 5 CA -0.191 REMARK 500 GLU A 5 CA GLU A 5 CB -0.144 REMARK 500 LYS A 61 CB LYS A 61 CG -0.177 REMARK 500 TYR A 63 N TYR A 63 CA -0.182 REMARK 500 TYR A 63 CB TYR A 63 CG -0.178 REMARK 500 TYR A 63 CG TYR A 63 CD1 -0.085 REMARK 500 ARG A 65 CG ARG A 65 CD -0.162 REMARK 500 ARG A 65 CD ARG A 65 NE -0.138 REMARK 500 ARG A 65 NE ARG A 65 CZ -0.092 REMARK 500 ARG A 71 N ARG A 71 CA -0.161 REMARK 500 ARG A 71 CA ARG A 71 CB -0.291 REMARK 500 ARG A 71 CB ARG A 71 CG -0.245 REMARK 500 ARG A 71 CG ARG A 71 CD -0.266 REMARK 500 ARG A 71 CD ARG A 71 NE -0.194 REMARK 500 ARG A 71 NE ARG A 71 CZ -0.138 REMARK 500 ARG A 71 CA ARG A 71 C -0.222 REMARK 500 ARG A 71 C ALA A 72 N -0.176 REMARK 500 ALA A 72 N ALA A 72 CA -0.330 REMARK 500 ALA A 72 C PRO A 73 N 0.120 REMARK 500 PRO A 74 CA PRO A 74 CB 0.129 REMARK 500 PRO A 74 CD PRO A 74 N 0.165 REMARK 500 PRO A 74 CA PRO A 74 C 0.317 REMARK 500 PRO A 74 C PRO A 74 O 1.018 REMARK 500 ALA A 75 N ALA A 75 CA 0.231 REMARK 500 ALA A 75 CA ALA A 75 CB -0.134 REMARK 500 ALA A 75 CA ALA A 75 C 0.340 REMARK 500 ALA A 76 N ALA A 76 CA 0.808 REMARK 500 ALA A 76 CA ALA A 76 CB -0.321 REMARK 500 ALA A 76 CA ALA A 76 C 0.327 REMARK 500 THR A 77 N THR A 77 CA 0.188 REMARK 500 THR A 77 CB THR A 77 CG2 -0.246 REMARK 500 ASN A 78 CG ASN A 78 OD1 0.202 REMARK 500 ASN A 78 CA ASN A 78 C 0.300 REMARK 500 SER A 79 N SER A 79 CA 0.666 REMARK 500 SER A 79 CA SER A 79 CB 0.815 REMARK 500 SER A 79 CB SER A 79 OG 0.271 REMARK 500 SER A 79 CA SER A 79 C -0.264 REMARK 500 SER A 79 C SER A 79 O 0.430 REMARK 500 SER A 79 C SER A 80 N 0.301 REMARK 500 SER A 80 N SER A 80 CA 0.349 REMARK 500 SER A 80 CB SER A 80 OG 0.171 REMARK 500 SER A 80 CA SER A 80 C -0.503 REMARK 500 SER A 80 C SER A 80 O 0.384 REMARK 500 LYS A 81 CA LYS A 81 CB 0.198 REMARK 500 LYS A 81 CD LYS A 81 CE -0.167 REMARK 500 LYS A 81 CA LYS A 81 C 0.424 REMARK 500 REMARK 500 THIS ENTRY HAS 61 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 2 N - CA - CB ANGL. DEV. = -17.5 DEGREES REMARK 500 LYS A 2 CB - CG - CD ANGL. DEV. = -21.7 DEGREES REMARK 500 LEU A 3 CB - CA - C ANGL. DEV. = -26.9 DEGREES REMARK 500 LEU A 3 N - CA - CB ANGL. DEV. = -19.1 DEGREES REMARK 500 LEU A 3 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ASN A 43 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 ASN A 43 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 62 CD - NE - CZ ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR A 63 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 TYR A 63 CB - CG - CD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 65 CD - NE - CZ ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 65 NH1 - CZ - NH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 LEU A 67 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 MET A 70 CA - CB - CG ANGL. DEV. = -13.2 DEGREES REMARK 500 MET A 70 CG - SD - CE ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG A 71 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG A 71 NH1 - CZ - NH2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ALA A 72 CB - CA - C ANGL. DEV. = 21.6 DEGREES REMARK 500 ALA A 72 N - CA - CB ANGL. DEV. = -15.2 DEGREES REMARK 500 PRO A 73 N - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 PRO A 74 CB - CA - C ANGL. DEV. = 21.4 DEGREES REMARK 500 PRO A 74 N - CA - CB ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO A 74 CA - C - O ANGL. DEV. = 18.6 DEGREES REMARK 500 ALA A 75 CA - C - N ANGL. DEV. = -20.5 DEGREES REMARK 500 ALA A 76 C - N - CA ANGL. DEV. = 37.4 DEGREES REMARK 500 ALA A 76 CA - C - N ANGL. DEV. = 18.7 DEGREES REMARK 500 ALA A 76 O - C - N ANGL. DEV. = -19.7 DEGREES REMARK 500 THR A 77 CA - CB - CG2 ANGL. DEV. = -12.0 DEGREES REMARK 500 THR A 77 N - CA - C ANGL. DEV. = 26.8 DEGREES REMARK 500 THR A 77 CA - C - N ANGL. DEV. = -14.8 DEGREES REMARK 500 ASN A 78 CB - CA - C ANGL. DEV. = -25.2 DEGREES REMARK 500 ASN A 78 N - CA - CB ANGL. DEV. = 28.2 DEGREES REMARK 500 SER A 79 CB - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 SER A 79 N - CA - CB ANGL. DEV. = 23.2 DEGREES REMARK 500 SER A 79 CA - CB - OG ANGL. DEV. = 20.9 DEGREES REMARK 500 SER A 79 CA - C - N ANGL. DEV. = -94.2 DEGREES REMARK 500 SER A 80 C - N - CA ANGL. DEV. = 48.0 DEGREES REMARK 500 SER A 80 CB - CA - C ANGL. DEV. = 21.6 DEGREES REMARK 500 SER A 80 CA - CB - OG ANGL. DEV. = 37.9 DEGREES REMARK 500 SER A 80 N - CA - C ANGL. DEV. = -40.3 DEGREES REMARK 500 SER A 80 CA - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 SER A 80 O - C - N ANGL. DEV. = 31.5 DEGREES REMARK 500 LYS A 81 C - N - CA ANGL. DEV. = 25.5 DEGREES REMARK 500 LYS A 81 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 LYS A 81 CB - CG - CD ANGL. DEV. = 23.5 DEGREES REMARK 500 LYS A 81 CG - CD - CE ANGL. DEV. = 31.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 62 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -151.25 -100.03 REMARK 500 PRO A 4 -75.13 -44.80 REMARK 500 GLU A 5 -110.94 -131.93 REMARK 500 SER A 6 72.35 128.08 REMARK 500 PRO A 7 -160.07 -53.64 REMARK 500 LYS A 8 27.75 -155.28 REMARK 500 ARG A 9 -90.60 49.90 REMARK 500 ALA A 10 -80.23 -70.70 REMARK 500 ILE A 19 -36.49 -35.66 REMARK 500 LYS A 27 60.40 61.94 REMARK 500 ASN A 28 35.43 107.58 REMARK 500 ARG A 30 -49.46 -18.92 REMARK 500 GLU A 45 -166.13 88.91 REMARK 500 LYS A 49 -72.81 -33.60 REMARK 500 LEU A 67 -79.59 -67.32 REMARK 500 SER A 68 -56.71 -28.39 REMARK 500 GLU A 69 -47.46 -23.53 REMARK 500 ALA A 76 -163.18 -126.50 REMARK 500 ASN A 78 56.63 164.46 REMARK 500 SER A 79 -105.15 -120.95 REMARK 500 SER A 80 95.29 175.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 77 ASN A 78 149.23 REMARK 500 SER A 79 SER A 80 -129.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 62 0.09 SIDE CHAIN REMARK 500 ARG A 65 0.24 SIDE CHAIN REMARK 500 ASN A 78 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 75 -13.82 REMARK 500 THR A 77 -17.48 REMARK 500 ASN A 78 12.13 REMARK 500 SER A 79 33.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L8Y RELATED DB: PDB REMARK 900 1L8Y CONTAINS 24 STRUCTURES OF THE SAME PROTEIN DBREF 1L8Z A 1 82 UNP P17480 UBF1_HUMAN 479 560 SEQADV 1L8Z MET A 0 UNP P17480 INITIATING METHIONINE SEQADV 1L8Z LEU A 83 UNP P17480 EXPRESSION TAG SEQADV 1L8Z GLU A 84 UNP P17480 EXPRESSION TAG SEQADV 1L8Z HIS A 85 UNP P17480 EXPRESSION TAG SEQADV 1L8Z HIS A 86 UNP P17480 EXPRESSION TAG SEQADV 1L8Z HIS A 87 UNP P17480 EXPRESSION TAG SEQADV 1L8Z HIS A 88 UNP P17480 EXPRESSION TAG SEQADV 1L8Z HIS A 89 UNP P17480 EXPRESSION TAG SEQADV 1L8Z HIS A 90 UNP P17480 EXPRESSION TAG SEQRES 1 A 91 MET GLY LYS LEU PRO GLU SER PRO LYS ARG ALA GLU GLU SEQRES 2 A 91 ILE TRP GLN GLN SER VAL ILE GLY ASP TYR LEU ALA ARG SEQRES 3 A 91 PHE LYS ASN ASP ARG VAL LYS ALA LEU LYS ALA MET GLU SEQRES 4 A 91 MET THR TRP ASN ASN MET GLU LYS LYS GLU LYS LEU MET SEQRES 5 A 91 TRP ILE LYS LYS ALA ALA GLU ASP GLN LYS ARG TYR GLU SEQRES 6 A 91 ARG GLU LEU SER GLU MET ARG ALA PRO PRO ALA ALA THR SEQRES 7 A 91 ASN SER SER LYS LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ARG A 9 LYS A 27 1 19 HELIX 2 2 ASP A 29 ASN A 43 1 15 HELIX 3 3 MET A 44 LYS A 46 5 3 HELIX 4 4 LYS A 47 ARG A 71 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000