data_1LDA # _entry.id 1LDA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LDA pdb_00001lda 10.2210/pdb1lda/pdb RCSB RCSB015855 ? ? WWPDB D_1000015855 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LDF 'CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) MUTATION W48F, F200T' unspecified PDB 1LDI 'CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LDA _pdbx_database_status.recvd_initial_deposition_date 2002-04-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nollert, P.' 1 'Miercke, L.J.W.' 2 ;O'Connell, J. ; 3 'Stroud, R.M.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Control of the selectivity of the aquaporin water channel family by global orientational tuning.' Science 296 525 530 2002 SCIEAS US 0036-8075 0038 ? 11964478 10.1126/science.1067778 1 'Structure of a Glycerol-Conducting Channel and the Basis for Its Selectivity' Science 290 481 486 2000 SCIEAS US 0036-8075 0038 ? ? 10.1126/science.290.5491.481 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tajkhorshid, E.' 1 ? primary 'Nollert, P.' 2 ? primary 'Jensen, M.O.' 3 ? primary 'Miercke, L.J.' 4 ? primary ;O'Connell, J. ; 5 ? primary 'Stroud, R.M.' 6 ? primary 'Schulten, K.' 7 ? 1 'Fu, D.' 8 ? 1 'Libson, A.' 9 ? 1 'Miercke, L.J.' 10 ? 1 'Weitzman, C.' 11 ? 1 'Nollert, P.' 12 ? 1 'Krucinski, J.' 13 ? 1 'Stroud, R.M.' 14 ? # _cell.entry_id 1LDA _cell.length_a 96.23 _cell.length_b 96.23 _cell.length_c 184.37 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LDA _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glycerol uptake facilitator protein' 29799.842 1 ? ? ? ? 2 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 2 ? ? ? ? 3 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Aquaglyceroporin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL ; _entity_poly.pdbx_seq_one_letter_code_can ;MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 GLN n 1 4 THR n 1 5 SER n 1 6 THR n 1 7 LEU n 1 8 LYS n 1 9 GLY n 1 10 GLN n 1 11 CYS n 1 12 ILE n 1 13 ALA n 1 14 GLU n 1 15 PHE n 1 16 LEU n 1 17 GLY n 1 18 THR n 1 19 GLY n 1 20 LEU n 1 21 LEU n 1 22 ILE n 1 23 PHE n 1 24 PHE n 1 25 GLY n 1 26 VAL n 1 27 GLY n 1 28 CYS n 1 29 VAL n 1 30 ALA n 1 31 ALA n 1 32 LEU n 1 33 LYS n 1 34 VAL n 1 35 ALA n 1 36 GLY n 1 37 ALA n 1 38 SER n 1 39 PHE n 1 40 GLY n 1 41 GLN n 1 42 TRP n 1 43 GLU n 1 44 ILE n 1 45 SER n 1 46 VAL n 1 47 ILE n 1 48 TRP n 1 49 GLY n 1 50 LEU n 1 51 GLY n 1 52 VAL n 1 53 ALA n 1 54 MET n 1 55 ALA n 1 56 ILE n 1 57 TYR n 1 58 LEU n 1 59 THR n 1 60 ALA n 1 61 GLY n 1 62 VAL n 1 63 SER n 1 64 GLY n 1 65 ALA n 1 66 HIS n 1 67 LEU n 1 68 ASN n 1 69 PRO n 1 70 ALA n 1 71 VAL n 1 72 THR n 1 73 ILE n 1 74 ALA n 1 75 LEU n 1 76 TRP n 1 77 LEU n 1 78 PHE n 1 79 ALA n 1 80 CYS n 1 81 PHE n 1 82 ASP n 1 83 LYS n 1 84 ARG n 1 85 LYS n 1 86 VAL n 1 87 ILE n 1 88 PRO n 1 89 PHE n 1 90 ILE n 1 91 VAL n 1 92 SER n 1 93 GLN n 1 94 VAL n 1 95 ALA n 1 96 GLY n 1 97 ALA n 1 98 PHE n 1 99 CYS n 1 100 ALA n 1 101 ALA n 1 102 ALA n 1 103 LEU n 1 104 VAL n 1 105 TYR n 1 106 GLY n 1 107 LEU n 1 108 TYR n 1 109 TYR n 1 110 ASN n 1 111 LEU n 1 112 PHE n 1 113 PHE n 1 114 ASP n 1 115 PHE n 1 116 GLU n 1 117 GLN n 1 118 THR n 1 119 HIS n 1 120 HIS n 1 121 ILE n 1 122 VAL n 1 123 ARG n 1 124 GLY n 1 125 SER n 1 126 VAL n 1 127 GLU n 1 128 SER n 1 129 VAL n 1 130 ASP n 1 131 LEU n 1 132 ALA n 1 133 GLY n 1 134 THR n 1 135 PHE n 1 136 SER n 1 137 THR n 1 138 TYR n 1 139 PRO n 1 140 ASN n 1 141 PRO n 1 142 HIS n 1 143 ILE n 1 144 ASN n 1 145 PHE n 1 146 VAL n 1 147 GLN n 1 148 ALA n 1 149 PHE n 1 150 ALA n 1 151 VAL n 1 152 GLU n 1 153 MET n 1 154 VAL n 1 155 ILE n 1 156 THR n 1 157 ALA n 1 158 ILE n 1 159 LEU n 1 160 MET n 1 161 GLY n 1 162 LEU n 1 163 ILE n 1 164 LEU n 1 165 ALA n 1 166 LEU n 1 167 THR n 1 168 ASP n 1 169 ASP n 1 170 GLY n 1 171 ASN n 1 172 GLY n 1 173 VAL n 1 174 PRO n 1 175 ARG n 1 176 GLY n 1 177 PRO n 1 178 LEU n 1 179 ALA n 1 180 PRO n 1 181 LEU n 1 182 LEU n 1 183 ILE n 1 184 GLY n 1 185 LEU n 1 186 LEU n 1 187 ILE n 1 188 ALA n 1 189 VAL n 1 190 ILE n 1 191 GLY n 1 192 ALA n 1 193 SER n 1 194 MET n 1 195 GLY n 1 196 PRO n 1 197 LEU n 1 198 THR n 1 199 GLY n 1 200 PHE n 1 201 ALA n 1 202 MET n 1 203 ASN n 1 204 PRO n 1 205 ALA n 1 206 ARG n 1 207 ASP n 1 208 PHE n 1 209 GLY n 1 210 PRO n 1 211 LYS n 1 212 VAL n 1 213 PHE n 1 214 ALA n 1 215 TRP n 1 216 LEU n 1 217 ALA n 1 218 GLY n 1 219 TRP n 1 220 GLY n 1 221 ASN n 1 222 VAL n 1 223 ALA n 1 224 PHE n 1 225 THR n 1 226 GLY n 1 227 GLY n 1 228 ARG n 1 229 ASP n 1 230 ILE n 1 231 PRO n 1 232 TYR n 1 233 PHE n 1 234 LEU n 1 235 VAL n 1 236 PRO n 1 237 LEU n 1 238 PHE n 1 239 GLY n 1 240 PRO n 1 241 ILE n 1 242 VAL n 1 243 GLY n 1 244 ALA n 1 245 ILE n 1 246 VAL n 1 247 GLY n 1 248 ALA n 1 249 PHE n 1 250 ALA n 1 251 TYR n 1 252 ARG n 1 253 LYS n 1 254 LEU n 1 255 ILE n 1 256 GLY n 1 257 ARG n 1 258 HIS n 1 259 LEU n 1 260 PRO n 1 261 CYS n 1 262 ASP n 1 263 ILE n 1 264 CYS n 1 265 VAL n 1 266 VAL n 1 267 GLU n 1 268 GLU n 1 269 LYS n 1 270 GLU n 1 271 THR n 1 272 THR n 1 273 THR n 1 274 PRO n 1 275 SER n 1 276 GLU n 1 277 GLN n 1 278 LYS n 1 279 ALA n 1 280 SER n 1 281 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli K12' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 83333 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain K12 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLPF_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P11244 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LDA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 281 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11244 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 281 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 281 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' 'Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside' 'C14 H28 O6' 292.369 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LDA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.58 _exptl_crystal.density_percent_sol 65.63 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.50 _exptl_crystal_grow.pdbx_details ;GLPF AT 15-20 MG/ML, 28% (W/V) PEG 2000, 100 MM BICINE pH 9.5, 15 % (V/V) GLYCEROL, 35 MM, N-OCTYL-BETA-D-GLUCOSIDE, MGCL2, 5 MM DTT, pH 9.50, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM' _diffrn_detector.pdbx_collection_date 2000-10-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength 1.1 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1LDA _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.800 _reflns.number_obs 8698 _reflns.number_all 8698 _reflns.percent_possible_obs 78.6 _reflns.pdbx_Rmerge_I_obs 0.0900000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.9000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.918 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 72.41 _reflns_shell.Rmerge_I_obs 0.2960000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1LDA _refine.ls_number_reflns_obs 8698 _refine.ls_number_reflns_all 8698 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 78.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2080000 _refine.ls_R_factor_R_free 0.2490000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 929 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1FX8' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1895 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 1997 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.11 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1LDA _struct.title 'CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LDA _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'GLYCEROL-CONDUCTING MEMBRANE CHANNEL PROTEIN, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is generated by the crystallographic four-fold axis: X,Y,Z; -X+1, -Y+1,Z; -Y+1, X, Z; Y, -X+1, Z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 6 ? ALA A 35 ? THR A 6 ALA A 35 1 ? 30 HELX_P HELX_P2 2 GLY A 40 ? GLY A 64 ? GLY A 40 GLY A 64 1 ? 25 HELX_P HELX_P3 3 ASN A 68 ? ALA A 79 ? ASN A 68 ALA A 79 1 ? 12 HELX_P HELX_P4 4 ASP A 82 ? ARG A 84 ? ASP A 82 ARG A 84 5 ? 3 HELX_P HELX_P5 5 LYS A 85 ? TYR A 109 ? LYS A 85 TYR A 109 1 ? 25 HELX_P HELX_P6 6 TYR A 108 ? HIS A 119 ? TYR A 108 HIS A 119 1 ? 12 HELX_P HELX_P7 7 SER A 125 ? GLU A 127 ? SER A 125 GLU A 127 5 ? 3 HELX_P HELX_P8 8 SER A 128 ? GLY A 133 ? SER A 128 GLY A 133 1 ? 6 HELX_P HELX_P9 9 ASN A 144 ? ASP A 168 ? ASN A 144 ASP A 168 1 ? 25 HELX_P HELX_P10 10 ARG A 175 ? PRO A 177 ? ARG A 175 PRO A 177 5 ? 3 HELX_P HELX_P11 11 LEU A 178 ? GLY A 199 ? LEU A 178 GLY A 199 1 ? 22 HELX_P HELX_P12 12 ASN A 203 ? ALA A 217 ? ASN A 203 ALA A 217 1 ? 15 HELX_P HELX_P13 13 ASN A 221 ? GLY A 226 ? ASN A 221 GLY A 226 1 ? 6 HELX_P HELX_P14 14 PHE A 233 ? GLY A 239 ? PHE A 233 GLY A 239 1 ? 7 HELX_P HELX_P15 15 PRO A 240 ? ILE A 255 ? PRO A 240 ILE A 255 1 ? 16 HELX_P HELX_P16 16 GLY A 256 ? LEU A 259 ? GLY A 256 LEU A 259 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1LDA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LDA _atom_sites.fract_transf_matrix[1][1] 0.010335 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005425 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 TRP 48 48 48 TRP TRP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 TRP 76 76 76 TRP TRP A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 HIS 142 142 142 HIS HIS A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 ASN 144 144 144 ASN ASN A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 MET 153 153 153 MET MET A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 MET 160 160 160 MET MET A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 PRO 180 180 180 PRO PRO A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 ILE 190 190 190 ILE ILE A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 MET 194 194 194 MET MET A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 PRO 196 196 196 PRO PRO A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 PHE 200 200 200 PHE PHE A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 MET 202 202 202 MET MET A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 PRO 204 204 204 PRO PRO A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 ASP 207 207 207 ASP ASP A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 PRO 210 210 210 PRO PRO A . n A 1 211 LYS 211 211 211 LYS LYS A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 ALA 214 214 214 ALA ALA A . n A 1 215 TRP 215 215 215 TRP TRP A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 TRP 219 219 219 TRP TRP A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 ASN 221 221 221 ASN ASN A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 PHE 224 224 224 PHE PHE A . n A 1 225 THR 225 225 225 THR THR A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 ARG 228 228 228 ARG ARG A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 PRO 231 231 231 PRO PRO A . n A 1 232 TYR 232 232 232 TYR TYR A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 LEU 234 234 234 LEU LEU A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 PHE 238 238 238 PHE PHE A . n A 1 239 GLY 239 239 239 GLY GLY A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 ILE 241 241 241 ILE ILE A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 GLY 243 243 243 GLY GLY A . n A 1 244 ALA 244 244 244 ALA ALA A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 VAL 246 246 246 VAL VAL A . n A 1 247 GLY 247 247 247 GLY GLY A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 PHE 249 249 249 PHE PHE A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 TYR 251 251 251 TYR TYR A . n A 1 252 ARG 252 252 252 ARG ARG A . n A 1 253 LYS 253 253 253 LYS LYS A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 ILE 255 255 255 ILE ILE A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 ARG 257 257 257 ARG ALA A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 LEU 259 259 259 LEU LEU A . n A 1 260 PRO 260 260 ? ? ? A . n A 1 261 CYS 261 261 ? ? ? A . n A 1 262 ASP 262 262 ? ? ? A . n A 1 263 ILE 263 263 ? ? ? A . n A 1 264 CYS 264 264 ? ? ? A . n A 1 265 VAL 265 265 ? ? ? A . n A 1 266 VAL 266 266 ? ? ? A . n A 1 267 GLU 267 267 ? ? ? A . n A 1 268 GLU 268 268 ? ? ? A . n A 1 269 LYS 269 269 ? ? ? A . n A 1 270 GLU 270 270 ? ? ? A . n A 1 271 THR 271 271 ? ? ? A . n A 1 272 THR 272 272 ? ? ? A . n A 1 273 THR 273 273 ? ? ? A . n A 1 274 PRO 274 274 ? ? ? A . n A 1 275 SER 275 275 ? ? ? A . n A 1 276 GLU 276 276 ? ? ? A . n A 1 277 GLN 277 277 ? ? ? A . n A 1 278 LYS 278 278 ? ? ? A . n A 1 279 ALA 279 279 ? ? ? A . n A 1 280 SER 280 280 ? ? ? A . n A 1 281 LEU 281 281 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG 1 473 473 BOG BOG A . C 2 BOG 1 474 474 BOG BOG A . D 3 HOH 1 475 1 HOH WAT A . D 3 HOH 2 476 2 HOH WAT A . D 3 HOH 3 477 3 HOH WAT A . D 3 HOH 4 478 4 HOH WAT A . D 3 HOH 5 479 6 HOH WAT A . D 3 HOH 6 480 7 HOH WAT A . D 3 HOH 7 481 9 HOH WAT A . D 3 HOH 8 482 10 HOH WAT A . D 3 HOH 9 483 11 HOH WAT A . D 3 HOH 10 484 13 HOH WAT A . D 3 HOH 11 485 14 HOH WAT A . D 3 HOH 12 486 15 HOH WAT A . D 3 HOH 13 487 20 HOH WAT A . D 3 HOH 14 488 21 HOH WAT A . D 3 HOH 15 489 22 HOH WAT A . D 3 HOH 16 490 25 HOH WAT A . D 3 HOH 17 491 26 HOH WAT A . D 3 HOH 18 492 28 HOH WAT A . D 3 HOH 19 493 31 HOH WAT A . D 3 HOH 20 494 35 HOH WAT A . D 3 HOH 21 495 36 HOH WAT A . D 3 HOH 22 496 37 HOH WAT A . D 3 HOH 23 497 40 HOH WAT A . D 3 HOH 24 498 44 HOH WAT A . D 3 HOH 25 499 45 HOH WAT A . D 3 HOH 26 500 47 HOH WAT A . D 3 HOH 27 501 48 HOH WAT A . D 3 HOH 28 502 49 HOH WAT A . D 3 HOH 29 503 50 HOH WAT A . D 3 HOH 30 504 51 HOH WAT A . D 3 HOH 31 505 55 HOH WAT A . D 3 HOH 32 506 56 HOH WAT A . D 3 HOH 33 507 63 HOH WAT A . D 3 HOH 34 508 65 HOH WAT A . D 3 HOH 35 509 67 HOH WAT A . D 3 HOH 36 510 68 HOH WAT A . D 3 HOH 37 511 69 HOH WAT A . D 3 HOH 38 512 73 HOH WAT A . D 3 HOH 39 513 75 HOH WAT A . D 3 HOH 40 514 84 HOH WAT A . D 3 HOH 41 515 85 HOH WAT A . D 3 HOH 42 516 86 HOH WAT A . D 3 HOH 43 517 90 HOH WAT A . D 3 HOH 44 518 522 HOH WAT A . D 3 HOH 45 519 441 HOH WAT A . D 3 HOH 46 520 349 HOH WAT A . D 3 HOH 47 521 191 HOH WAT A . D 3 HOH 48 522 348 HOH WAT A . D 3 HOH 49 523 347 HOH WAT A . D 3 HOH 50 524 367 HOH WAT A . D 3 HOH 51 525 359 HOH WAT A . D 3 HOH 52 526 405 HOH WAT A . D 3 HOH 53 527 423 HOH WAT A . D 3 HOH 54 528 361 HOH WAT A . D 3 HOH 55 529 382 HOH WAT A . D 3 HOH 56 530 354 HOH WAT A . D 3 HOH 57 531 442 HOH WAT A . D 3 HOH 58 532 365 HOH WAT A . D 3 HOH 59 533 351 HOH WAT A . D 3 HOH 60 534 366 HOH WAT A . D 3 HOH 61 535 370 HOH WAT A . D 3 HOH 62 536 381 HOH WAT A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS tetrameric 4 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,C,D 2 5,6,7,8 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 13020 ? 2 MORE -142 ? 2 'SSA (A^2)' 36000 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 96.7585873246 0.0000000000 -1.0000000000 0.0000000000 96.7585873246 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 96.7585873246 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 96.7585873246 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 13_556 -x+1/2,y+1/2,-z+3/2 -1.0000000000 0.0000000000 0.0000000000 48.3792936623 0.0000000000 1.0000000000 0.0000000000 48.3792936623 0.0000000000 0.0000000000 -1.0000000000 276.4976958525 6 'crystal symmetry operation' 14_466 x-1/2,-y+3/2,-z+3/2 1.0000000000 0.0000000000 0.0000000000 -48.3792936623 0.0000000000 -1.0000000000 0.0000000000 145.1378809869 0.0000000000 0.0000000000 -1.0000000000 276.4976958525 7 'crystal symmetry operation' 15_456 y-1/2,x+1/2,-z+3/2 0.0000000000 1.0000000000 0.0000000000 -48.3792936623 1.0000000000 0.0000000000 0.0000000000 48.3792936623 0.0000000000 0.0000000000 -1.0000000000 276.4976958525 8 'crystal symmetry operation' 16_566 -y+1/2,-x+3/2,-z+3/2 0.0000000000 -1.0000000000 0.0000000000 48.3792936623 -1.0000000000 0.0000000000 0.0000000000 145.1378809869 0.0000000000 0.0000000000 -1.0000000000 276.4976958525 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 505 ? D HOH . 2 1 A HOH 523 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-08 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-08-16 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Refinement description' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' pdbx_struct_special_symmetry 7 4 'Structure model' pdbx_validate_symm_contact 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.occupancy' 2 4 'Structure model' '_chem_comp.mon_nstd_flag' 3 4 'Structure model' '_chem_comp.name' 4 4 'Structure model' '_chem_comp.type' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_entity_nonpoly.name' 7 5 'Structure model' '_chem_comp.pdbx_synonyms' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX DETERMINATION METHOD: AUTHOR ; # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 475 ? ? 1_555 O A HOH 475 ? ? 3_655 0.55 2 1 O A HOH 496 ? ? 1_555 O A HOH 496 ? ? 3_655 0.55 3 1 O A HOH 522 ? ? 1_555 O A HOH 522 ? ? 3_655 0.55 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 62 ? ? -105.74 -76.06 2 1 ASN A 68 ? ? -161.67 116.73 3 1 HIS A 120 ? ? 34.44 65.66 4 1 PHE A 200 ? ? 27.11 58.01 5 1 MET A 202 ? ? 38.48 30.20 6 1 ILE A 255 ? ? -121.26 -56.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 257 ? CG ? A ARG 257 CG 2 1 Y 1 A ARG 257 ? CD ? A ARG 257 CD 3 1 Y 1 A ARG 257 ? NE ? A ARG 257 NE 4 1 Y 1 A ARG 257 ? CZ ? A ARG 257 CZ 5 1 Y 1 A ARG 257 ? NH1 ? A ARG 257 NH1 6 1 Y 1 A ARG 257 ? NH2 ? A ARG 257 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A PRO 260 ? A PRO 260 7 1 Y 1 A CYS 261 ? A CYS 261 8 1 Y 1 A ASP 262 ? A ASP 262 9 1 Y 1 A ILE 263 ? A ILE 263 10 1 Y 1 A CYS 264 ? A CYS 264 11 1 Y 1 A VAL 265 ? A VAL 265 12 1 Y 1 A VAL 266 ? A VAL 266 13 1 Y 1 A GLU 267 ? A GLU 267 14 1 Y 1 A GLU 268 ? A GLU 268 15 1 Y 1 A LYS 269 ? A LYS 269 16 1 Y 1 A GLU 270 ? A GLU 270 17 1 Y 1 A THR 271 ? A THR 271 18 1 Y 1 A THR 272 ? A THR 272 19 1 Y 1 A THR 273 ? A THR 273 20 1 Y 1 A PRO 274 ? A PRO 274 21 1 Y 1 A SER 275 ? A SER 275 22 1 Y 1 A GLU 276 ? A GLU 276 23 1 Y 1 A GLN 277 ? A GLN 277 24 1 Y 1 A LYS 278 ? A LYS 278 25 1 Y 1 A ALA 279 ? A ALA 279 26 1 Y 1 A SER 280 ? A SER 280 27 1 Y 1 A LEU 281 ? A LEU 281 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BOG C1 C N R 74 BOG O1 O N N 75 BOG C2 C N R 76 BOG O2 O N N 77 BOG C3 C N S 78 BOG O3 O N N 79 BOG C4 C N S 80 BOG O4 O N N 81 BOG C5 C N R 82 BOG O5 O N N 83 BOG C6 C N N 84 BOG O6 O N N 85 BOG "C1'" C N N 86 BOG "C2'" C N N 87 BOG "C3'" C N N 88 BOG "C4'" C N N 89 BOG "C5'" C N N 90 BOG "C6'" C N N 91 BOG "C7'" C N N 92 BOG "C8'" C N N 93 BOG H1 H N N 94 BOG H2 H N N 95 BOG HO2 H N N 96 BOG H3 H N N 97 BOG HO3 H N N 98 BOG H4 H N N 99 BOG HO4 H N N 100 BOG H5 H N N 101 BOG H61 H N N 102 BOG H62 H N N 103 BOG HO6 H N N 104 BOG "H1'1" H N N 105 BOG "H1'2" H N N 106 BOG "H2'1" H N N 107 BOG "H2'2" H N N 108 BOG "H3'1" H N N 109 BOG "H3'2" H N N 110 BOG "H4'1" H N N 111 BOG "H4'2" H N N 112 BOG "H5'1" H N N 113 BOG "H5'2" H N N 114 BOG "H6'1" H N N 115 BOG "H6'2" H N N 116 BOG "H7'1" H N N 117 BOG "H7'2" H N N 118 BOG "H8'1" H N N 119 BOG "H8'2" H N N 120 BOG "H8'3" H N N 121 CYS N N N N 122 CYS CA C N R 123 CYS C C N N 124 CYS O O N N 125 CYS CB C N N 126 CYS SG S N N 127 CYS OXT O N N 128 CYS H H N N 129 CYS H2 H N N 130 CYS HA H N N 131 CYS HB2 H N N 132 CYS HB3 H N N 133 CYS HG H N N 134 CYS HXT H N N 135 GLN N N N N 136 GLN CA C N S 137 GLN C C N N 138 GLN O O N N 139 GLN CB C N N 140 GLN CG C N N 141 GLN CD C N N 142 GLN OE1 O N N 143 GLN NE2 N N N 144 GLN OXT O N N 145 GLN H H N N 146 GLN H2 H N N 147 GLN HA H N N 148 GLN HB2 H N N 149 GLN HB3 H N N 150 GLN HG2 H N N 151 GLN HG3 H N N 152 GLN HE21 H N N 153 GLN HE22 H N N 154 GLN HXT H N N 155 GLU N N N N 156 GLU CA C N S 157 GLU C C N N 158 GLU O O N N 159 GLU CB C N N 160 GLU CG C N N 161 GLU CD C N N 162 GLU OE1 O N N 163 GLU OE2 O N N 164 GLU OXT O N N 165 GLU H H N N 166 GLU H2 H N N 167 GLU HA H N N 168 GLU HB2 H N N 169 GLU HB3 H N N 170 GLU HG2 H N N 171 GLU HG3 H N N 172 GLU HE2 H N N 173 GLU HXT H N N 174 GLY N N N N 175 GLY CA C N N 176 GLY C C N N 177 GLY O O N N 178 GLY OXT O N N 179 GLY H H N N 180 GLY H2 H N N 181 GLY HA2 H N N 182 GLY HA3 H N N 183 GLY HXT H N N 184 HIS N N N N 185 HIS CA C N S 186 HIS C C N N 187 HIS O O N N 188 HIS CB C N N 189 HIS CG C Y N 190 HIS ND1 N Y N 191 HIS CD2 C Y N 192 HIS CE1 C Y N 193 HIS NE2 N Y N 194 HIS OXT O N N 195 HIS H H N N 196 HIS H2 H N N 197 HIS HA H N N 198 HIS HB2 H N N 199 HIS HB3 H N N 200 HIS HD1 H N N 201 HIS HD2 H N N 202 HIS HE1 H N N 203 HIS HE2 H N N 204 HIS HXT H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 MET N N N N 278 MET CA C N S 279 MET C C N N 280 MET O O N N 281 MET CB C N N 282 MET CG C N N 283 MET SD S N N 284 MET CE C N N 285 MET OXT O N N 286 MET H H N N 287 MET H2 H N N 288 MET HA H N N 289 MET HB2 H N N 290 MET HB3 H N N 291 MET HG2 H N N 292 MET HG3 H N N 293 MET HE1 H N N 294 MET HE2 H N N 295 MET HE3 H N N 296 MET HXT H N N 297 PHE N N N N 298 PHE CA C N S 299 PHE C C N N 300 PHE O O N N 301 PHE CB C N N 302 PHE CG C Y N 303 PHE CD1 C Y N 304 PHE CD2 C Y N 305 PHE CE1 C Y N 306 PHE CE2 C Y N 307 PHE CZ C Y N 308 PHE OXT O N N 309 PHE H H N N 310 PHE H2 H N N 311 PHE HA H N N 312 PHE HB2 H N N 313 PHE HB3 H N N 314 PHE HD1 H N N 315 PHE HD2 H N N 316 PHE HE1 H N N 317 PHE HE2 H N N 318 PHE HZ H N N 319 PHE HXT H N N 320 PRO N N N N 321 PRO CA C N S 322 PRO C C N N 323 PRO O O N N 324 PRO CB C N N 325 PRO CG C N N 326 PRO CD C N N 327 PRO OXT O N N 328 PRO H H N N 329 PRO HA H N N 330 PRO HB2 H N N 331 PRO HB3 H N N 332 PRO HG2 H N N 333 PRO HG3 H N N 334 PRO HD2 H N N 335 PRO HD3 H N N 336 PRO HXT H N N 337 SER N N N N 338 SER CA C N S 339 SER C C N N 340 SER O O N N 341 SER CB C N N 342 SER OG O N N 343 SER OXT O N N 344 SER H H N N 345 SER H2 H N N 346 SER HA H N N 347 SER HB2 H N N 348 SER HB3 H N N 349 SER HG H N N 350 SER HXT H N N 351 THR N N N N 352 THR CA C N S 353 THR C C N N 354 THR O O N N 355 THR CB C N R 356 THR OG1 O N N 357 THR CG2 C N N 358 THR OXT O N N 359 THR H H N N 360 THR H2 H N N 361 THR HA H N N 362 THR HB H N N 363 THR HG1 H N N 364 THR HG21 H N N 365 THR HG22 H N N 366 THR HG23 H N N 367 THR HXT H N N 368 TRP N N N N 369 TRP CA C N S 370 TRP C C N N 371 TRP O O N N 372 TRP CB C N N 373 TRP CG C Y N 374 TRP CD1 C Y N 375 TRP CD2 C Y N 376 TRP NE1 N Y N 377 TRP CE2 C Y N 378 TRP CE3 C Y N 379 TRP CZ2 C Y N 380 TRP CZ3 C Y N 381 TRP CH2 C Y N 382 TRP OXT O N N 383 TRP H H N N 384 TRP H2 H N N 385 TRP HA H N N 386 TRP HB2 H N N 387 TRP HB3 H N N 388 TRP HD1 H N N 389 TRP HE1 H N N 390 TRP HE3 H N N 391 TRP HZ2 H N N 392 TRP HZ3 H N N 393 TRP HH2 H N N 394 TRP HXT H N N 395 TYR N N N N 396 TYR CA C N S 397 TYR C C N N 398 TYR O O N N 399 TYR CB C N N 400 TYR CG C Y N 401 TYR CD1 C Y N 402 TYR CD2 C Y N 403 TYR CE1 C Y N 404 TYR CE2 C Y N 405 TYR CZ C Y N 406 TYR OH O N N 407 TYR OXT O N N 408 TYR H H N N 409 TYR H2 H N N 410 TYR HA H N N 411 TYR HB2 H N N 412 TYR HB3 H N N 413 TYR HD1 H N N 414 TYR HD2 H N N 415 TYR HE1 H N N 416 TYR HE2 H N N 417 TYR HH H N N 418 TYR HXT H N N 419 VAL N N N N 420 VAL CA C N S 421 VAL C C N N 422 VAL O O N N 423 VAL CB C N N 424 VAL CG1 C N N 425 VAL CG2 C N N 426 VAL OXT O N N 427 VAL H H N N 428 VAL H2 H N N 429 VAL HA H N N 430 VAL HB H N N 431 VAL HG11 H N N 432 VAL HG12 H N N 433 VAL HG13 H N N 434 VAL HG21 H N N 435 VAL HG22 H N N 436 VAL HG23 H N N 437 VAL HXT H N N 438 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BOG C1 O1 sing N N 70 BOG C1 C2 sing N N 71 BOG C1 O5 sing N N 72 BOG C1 H1 sing N N 73 BOG O1 "C1'" sing N N 74 BOG C2 O2 sing N N 75 BOG C2 C3 sing N N 76 BOG C2 H2 sing N N 77 BOG O2 HO2 sing N N 78 BOG C3 O3 sing N N 79 BOG C3 C4 sing N N 80 BOG C3 H3 sing N N 81 BOG O3 HO3 sing N N 82 BOG C4 O4 sing N N 83 BOG C4 C5 sing N N 84 BOG C4 H4 sing N N 85 BOG O4 HO4 sing N N 86 BOG C5 O5 sing N N 87 BOG C5 C6 sing N N 88 BOG C5 H5 sing N N 89 BOG C6 O6 sing N N 90 BOG C6 H61 sing N N 91 BOG C6 H62 sing N N 92 BOG O6 HO6 sing N N 93 BOG "C1'" "C2'" sing N N 94 BOG "C1'" "H1'1" sing N N 95 BOG "C1'" "H1'2" sing N N 96 BOG "C2'" "C3'" sing N N 97 BOG "C2'" "H2'1" sing N N 98 BOG "C2'" "H2'2" sing N N 99 BOG "C3'" "C4'" sing N N 100 BOG "C3'" "H3'1" sing N N 101 BOG "C3'" "H3'2" sing N N 102 BOG "C4'" "C5'" sing N N 103 BOG "C4'" "H4'1" sing N N 104 BOG "C4'" "H4'2" sing N N 105 BOG "C5'" "C6'" sing N N 106 BOG "C5'" "H5'1" sing N N 107 BOG "C5'" "H5'2" sing N N 108 BOG "C6'" "C7'" sing N N 109 BOG "C6'" "H6'1" sing N N 110 BOG "C6'" "H6'2" sing N N 111 BOG "C7'" "C8'" sing N N 112 BOG "C7'" "H7'1" sing N N 113 BOG "C7'" "H7'2" sing N N 114 BOG "C8'" "H8'1" sing N N 115 BOG "C8'" "H8'2" sing N N 116 BOG "C8'" "H8'3" sing N N 117 CYS N CA sing N N 118 CYS N H sing N N 119 CYS N H2 sing N N 120 CYS CA C sing N N 121 CYS CA CB sing N N 122 CYS CA HA sing N N 123 CYS C O doub N N 124 CYS C OXT sing N N 125 CYS CB SG sing N N 126 CYS CB HB2 sing N N 127 CYS CB HB3 sing N N 128 CYS SG HG sing N N 129 CYS OXT HXT sing N N 130 GLN N CA sing N N 131 GLN N H sing N N 132 GLN N H2 sing N N 133 GLN CA C sing N N 134 GLN CA CB sing N N 135 GLN CA HA sing N N 136 GLN C O doub N N 137 GLN C OXT sing N N 138 GLN CB CG sing N N 139 GLN CB HB2 sing N N 140 GLN CB HB3 sing N N 141 GLN CG CD sing N N 142 GLN CG HG2 sing N N 143 GLN CG HG3 sing N N 144 GLN CD OE1 doub N N 145 GLN CD NE2 sing N N 146 GLN NE2 HE21 sing N N 147 GLN NE2 HE22 sing N N 148 GLN OXT HXT sing N N 149 GLU N CA sing N N 150 GLU N H sing N N 151 GLU N H2 sing N N 152 GLU CA C sing N N 153 GLU CA CB sing N N 154 GLU CA HA sing N N 155 GLU C O doub N N 156 GLU C OXT sing N N 157 GLU CB CG sing N N 158 GLU CB HB2 sing N N 159 GLU CB HB3 sing N N 160 GLU CG CD sing N N 161 GLU CG HG2 sing N N 162 GLU CG HG3 sing N N 163 GLU CD OE1 doub N N 164 GLU CD OE2 sing N N 165 GLU OE2 HE2 sing N N 166 GLU OXT HXT sing N N 167 GLY N CA sing N N 168 GLY N H sing N N 169 GLY N H2 sing N N 170 GLY CA C sing N N 171 GLY CA HA2 sing N N 172 GLY CA HA3 sing N N 173 GLY C O doub N N 174 GLY C OXT sing N N 175 GLY OXT HXT sing N N 176 HIS N CA sing N N 177 HIS N H sing N N 178 HIS N H2 sing N N 179 HIS CA C sing N N 180 HIS CA CB sing N N 181 HIS CA HA sing N N 182 HIS C O doub N N 183 HIS C OXT sing N N 184 HIS CB CG sing N N 185 HIS CB HB2 sing N N 186 HIS CB HB3 sing N N 187 HIS CG ND1 sing Y N 188 HIS CG CD2 doub Y N 189 HIS ND1 CE1 doub Y N 190 HIS ND1 HD1 sing N N 191 HIS CD2 NE2 sing Y N 192 HIS CD2 HD2 sing N N 193 HIS CE1 NE2 sing Y N 194 HIS CE1 HE1 sing N N 195 HIS NE2 HE2 sing N N 196 HIS OXT HXT sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 ILE N CA sing N N 200 ILE N H sing N N 201 ILE N H2 sing N N 202 ILE CA C sing N N 203 ILE CA CB sing N N 204 ILE CA HA sing N N 205 ILE C O doub N N 206 ILE C OXT sing N N 207 ILE CB CG1 sing N N 208 ILE CB CG2 sing N N 209 ILE CB HB sing N N 210 ILE CG1 CD1 sing N N 211 ILE CG1 HG12 sing N N 212 ILE CG1 HG13 sing N N 213 ILE CG2 HG21 sing N N 214 ILE CG2 HG22 sing N N 215 ILE CG2 HG23 sing N N 216 ILE CD1 HD11 sing N N 217 ILE CD1 HD12 sing N N 218 ILE CD1 HD13 sing N N 219 ILE OXT HXT sing N N 220 LEU N CA sing N N 221 LEU N H sing N N 222 LEU N H2 sing N N 223 LEU CA C sing N N 224 LEU CA CB sing N N 225 LEU CA HA sing N N 226 LEU C O doub N N 227 LEU C OXT sing N N 228 LEU CB CG sing N N 229 LEU CB HB2 sing N N 230 LEU CB HB3 sing N N 231 LEU CG CD1 sing N N 232 LEU CG CD2 sing N N 233 LEU CG HG sing N N 234 LEU CD1 HD11 sing N N 235 LEU CD1 HD12 sing N N 236 LEU CD1 HD13 sing N N 237 LEU CD2 HD21 sing N N 238 LEU CD2 HD22 sing N N 239 LEU CD2 HD23 sing N N 240 LEU OXT HXT sing N N 241 LYS N CA sing N N 242 LYS N H sing N N 243 LYS N H2 sing N N 244 LYS CA C sing N N 245 LYS CA CB sing N N 246 LYS CA HA sing N N 247 LYS C O doub N N 248 LYS C OXT sing N N 249 LYS CB CG sing N N 250 LYS CB HB2 sing N N 251 LYS CB HB3 sing N N 252 LYS CG CD sing N N 253 LYS CG HG2 sing N N 254 LYS CG HG3 sing N N 255 LYS CD CE sing N N 256 LYS CD HD2 sing N N 257 LYS CD HD3 sing N N 258 LYS CE NZ sing N N 259 LYS CE HE2 sing N N 260 LYS CE HE3 sing N N 261 LYS NZ HZ1 sing N N 262 LYS NZ HZ2 sing N N 263 LYS NZ HZ3 sing N N 264 LYS OXT HXT sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 PHE N CA sing N N 285 PHE N H sing N N 286 PHE N H2 sing N N 287 PHE CA C sing N N 288 PHE CA CB sing N N 289 PHE CA HA sing N N 290 PHE C O doub N N 291 PHE C OXT sing N N 292 PHE CB CG sing N N 293 PHE CB HB2 sing N N 294 PHE CB HB3 sing N N 295 PHE CG CD1 doub Y N 296 PHE CG CD2 sing Y N 297 PHE CD1 CE1 sing Y N 298 PHE CD1 HD1 sing N N 299 PHE CD2 CE2 doub Y N 300 PHE CD2 HD2 sing N N 301 PHE CE1 CZ doub Y N 302 PHE CE1 HE1 sing N N 303 PHE CE2 CZ sing Y N 304 PHE CE2 HE2 sing N N 305 PHE CZ HZ sing N N 306 PHE OXT HXT sing N N 307 PRO N CA sing N N 308 PRO N CD sing N N 309 PRO N H sing N N 310 PRO CA C sing N N 311 PRO CA CB sing N N 312 PRO CA HA sing N N 313 PRO C O doub N N 314 PRO C OXT sing N N 315 PRO CB CG sing N N 316 PRO CB HB2 sing N N 317 PRO CB HB3 sing N N 318 PRO CG CD sing N N 319 PRO CG HG2 sing N N 320 PRO CG HG3 sing N N 321 PRO CD HD2 sing N N 322 PRO CD HD3 sing N N 323 PRO OXT HXT sing N N 324 SER N CA sing N N 325 SER N H sing N N 326 SER N H2 sing N N 327 SER CA C sing N N 328 SER CA CB sing N N 329 SER CA HA sing N N 330 SER C O doub N N 331 SER C OXT sing N N 332 SER CB OG sing N N 333 SER CB HB2 sing N N 334 SER CB HB3 sing N N 335 SER OG HG sing N N 336 SER OXT HXT sing N N 337 THR N CA sing N N 338 THR N H sing N N 339 THR N H2 sing N N 340 THR CA C sing N N 341 THR CA CB sing N N 342 THR CA HA sing N N 343 THR C O doub N N 344 THR C OXT sing N N 345 THR CB OG1 sing N N 346 THR CB CG2 sing N N 347 THR CB HB sing N N 348 THR OG1 HG1 sing N N 349 THR CG2 HG21 sing N N 350 THR CG2 HG22 sing N N 351 THR CG2 HG23 sing N N 352 THR OXT HXT sing N N 353 TRP N CA sing N N 354 TRP N H sing N N 355 TRP N H2 sing N N 356 TRP CA C sing N N 357 TRP CA CB sing N N 358 TRP CA HA sing N N 359 TRP C O doub N N 360 TRP C OXT sing N N 361 TRP CB CG sing N N 362 TRP CB HB2 sing N N 363 TRP CB HB3 sing N N 364 TRP CG CD1 doub Y N 365 TRP CG CD2 sing Y N 366 TRP CD1 NE1 sing Y N 367 TRP CD1 HD1 sing N N 368 TRP CD2 CE2 doub Y N 369 TRP CD2 CE3 sing Y N 370 TRP NE1 CE2 sing Y N 371 TRP NE1 HE1 sing N N 372 TRP CE2 CZ2 sing Y N 373 TRP CE3 CZ3 doub Y N 374 TRP CE3 HE3 sing N N 375 TRP CZ2 CH2 doub Y N 376 TRP CZ2 HZ2 sing N N 377 TRP CZ3 CH2 sing Y N 378 TRP CZ3 HZ3 sing N N 379 TRP CH2 HH2 sing N N 380 TRP OXT HXT sing N N 381 TYR N CA sing N N 382 TYR N H sing N N 383 TYR N H2 sing N N 384 TYR CA C sing N N 385 TYR CA CB sing N N 386 TYR CA HA sing N N 387 TYR C O doub N N 388 TYR C OXT sing N N 389 TYR CB CG sing N N 390 TYR CB HB2 sing N N 391 TYR CB HB3 sing N N 392 TYR CG CD1 doub Y N 393 TYR CG CD2 sing Y N 394 TYR CD1 CE1 sing Y N 395 TYR CD1 HD1 sing N N 396 TYR CD2 CE2 doub Y N 397 TYR CD2 HD2 sing N N 398 TYR CE1 CZ doub Y N 399 TYR CE1 HE1 sing N N 400 TYR CE2 CZ sing Y N 401 TYR CE2 HE2 sing N N 402 TYR CZ OH sing N N 403 TYR OH HH sing N N 404 TYR OXT HXT sing N N 405 VAL N CA sing N N 406 VAL N H sing N N 407 VAL N H2 sing N N 408 VAL CA C sing N N 409 VAL CA CB sing N N 410 VAL CA HA sing N N 411 VAL C O doub N N 412 VAL C OXT sing N N 413 VAL CB CG1 sing N N 414 VAL CB CG2 sing N N 415 VAL CB HB sing N N 416 VAL CG1 HG11 sing N N 417 VAL CG1 HG12 sing N N 418 VAL CG1 HG13 sing N N 419 VAL CG2 HG21 sing N N 420 VAL CG2 HG22 sing N N 421 VAL CG2 HG23 sing N N 422 VAL OXT HXT sing N N 423 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'octyl beta-D-glucopyranoside' BOG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FX8 _pdbx_initial_refinement_model.details 'PDB ENTRY 1FX8' #