data_1LE2 # _entry.id 1LE2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LE2 WWPDB D_1000174677 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LE2 _pdbx_database_status.recvd_initial_deposition_date 1991-08-22 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wilson, C.' 1 'Agard, D.A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Salt bridge relay triggers defective LDL receptor binding by a mutant apolipoprotein.' Structure 2 713 718 1994 STRUE6 UK 0969-2126 2005 ? 7994571 '10.1016/S0969-2126(00)00072-1' 1 'Three-Dimensional Structure of the Ldl Receptor-Binding Domain of Human Apolipoprotein E' Science 252 1817 ? 1991 SCIEAS US 0036-8075 0038 ? ? ? 2 ;Crystallization and Preliminary X-Ray Diffraction Studies on the Amino-Terminal (Receptor-Binding) Domain of Human Apolipoprotein E3 from Serum Very Low Density Lipoproteins ; J.Mol.Biol. 202 179 ? 1988 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wilson, C.' 1 primary 'Mau, T.' 2 primary 'Weisgraber, K.H.' 3 primary 'Wardell, M.R.' 4 primary 'Mahley, R.W.' 5 primary 'Agard, D.A.' 6 1 'Wilson, C.' 7 1 'Wardell, M.R.' 8 1 'Weisgraber, K.H.' 9 1 'Mahley, R.W.' 10 1 'Agard, D.A.' 11 2 'Aggerbeck, L.P.' 12 2 'Wetterau, J.R.' 13 2 'Weisgraber, K.H.' 14 2 'Mahley, R.W.' 15 2 'Agard, D.A.' 16 # _cell.entry_id 1LE2 _cell.length_a 41.060 _cell.length_b 53.940 _cell.length_c 83.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LE2 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'APOLIPOPROTEIN E2' _entity.formula_weight 16689.027 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKCLAVYQAGA ; _entity_poly.pdbx_seq_one_letter_code_can ;GQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKCLAVYQAGA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 ARG n 1 4 TRP n 1 5 GLU n 1 6 LEU n 1 7 ALA n 1 8 LEU n 1 9 GLY n 1 10 ARG n 1 11 PHE n 1 12 TRP n 1 13 ASP n 1 14 TYR n 1 15 LEU n 1 16 ARG n 1 17 TRP n 1 18 VAL n 1 19 GLN n 1 20 THR n 1 21 LEU n 1 22 SER n 1 23 GLU n 1 24 GLN n 1 25 VAL n 1 26 GLN n 1 27 GLU n 1 28 GLU n 1 29 LEU n 1 30 LEU n 1 31 SER n 1 32 SER n 1 33 GLN n 1 34 VAL n 1 35 THR n 1 36 GLN n 1 37 GLU n 1 38 LEU n 1 39 ARG n 1 40 ALA n 1 41 LEU n 1 42 MET n 1 43 ASP n 1 44 GLU n 1 45 THR n 1 46 MET n 1 47 LYS n 1 48 GLU n 1 49 LEU n 1 50 LYS n 1 51 ALA n 1 52 TYR n 1 53 LYS n 1 54 SER n 1 55 GLU n 1 56 LEU n 1 57 GLU n 1 58 GLU n 1 59 GLN n 1 60 LEU n 1 61 THR n 1 62 PRO n 1 63 VAL n 1 64 ALA n 1 65 GLU n 1 66 GLU n 1 67 THR n 1 68 ARG n 1 69 ALA n 1 70 ARG n 1 71 LEU n 1 72 SER n 1 73 LYS n 1 74 GLU n 1 75 LEU n 1 76 GLN n 1 77 ALA n 1 78 ALA n 1 79 GLN n 1 80 ALA n 1 81 ARG n 1 82 LEU n 1 83 GLY n 1 84 ALA n 1 85 ASP n 1 86 MET n 1 87 GLU n 1 88 ASP n 1 89 VAL n 1 90 CYS n 1 91 GLY n 1 92 ARG n 1 93 LEU n 1 94 VAL n 1 95 GLN n 1 96 TYR n 1 97 ARG n 1 98 GLY n 1 99 GLU n 1 100 VAL n 1 101 GLN n 1 102 ALA n 1 103 MET n 1 104 LEU n 1 105 GLY n 1 106 GLN n 1 107 SER n 1 108 THR n 1 109 GLU n 1 110 GLU n 1 111 LEU n 1 112 ARG n 1 113 VAL n 1 114 ARG n 1 115 LEU n 1 116 ALA n 1 117 SER n 1 118 HIS n 1 119 LEU n 1 120 ARG n 1 121 LYS n 1 122 LEU n 1 123 ARG n 1 124 LYS n 1 125 ARG n 1 126 LEU n 1 127 LEU n 1 128 ARG n 1 129 ASP n 1 130 ALA n 1 131 ASP n 1 132 ASP n 1 133 LEU n 1 134 GLN n 1 135 LYS n 1 136 CYS n 1 137 LEU n 1 138 ALA n 1 139 VAL n 1 140 TYR n 1 141 GLN n 1 142 ALA n 1 143 GLY n 1 144 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene E2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name unidentified _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32644 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code APOE_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P02649 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRA LMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLR KLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMG SRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQARLKSWFEPLVEDMQRQWAGLVEKVQAAVGTSAAPVPSDNH ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LE2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02649 _struct_ref_seq.db_align_beg 41 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 184 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 166 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1LE2 _struct_ref_seq_dif.mon_id CYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 136 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P02649 _struct_ref_seq_dif.db_mon_id ARG _struct_ref_seq_dif.pdbx_seq_db_seq_num 176 _struct_ref_seq_dif.details CONFLICT _struct_ref_seq_dif.pdbx_auth_seq_num 158 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LE2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_percent_sol 55.81 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1LE2 _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1950000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE LOOP CONNECTING THE SECOND AND THIRD HELICES OF THE FOUR-HELIX BUNDLE (RESIDUES 83-88) IS POORLY DEFINED IN THE ELECTRON DENSITY MAP. X-PLOR-REFINED COORDINATES FOR THE LOOP HAVE BEEN INCLUDED IN THE STRUCTURE BUT ARE LIKELY TO CONTAIN ERRORS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1167 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1167 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.7 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1LE2 _struct.title 'STRUCTURAL BASIS FOR ALTERED FUNCTION IN THE COMMON MUTANTS OF HUMAN APOLIPOPROTEIN-E' _struct.pdbx_descriptor 'APOLIPOPROTEIN-E2 (LDL RECEPTOR BINDING DOMAIN) (MUTANT WITH ARG 158 REPLACED BY CYS) (R158C)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LE2 _struct_keywords.pdbx_keywords LIPOPROTEIN _struct_keywords.text LIPOPROTEIN # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 GLN A 2 ? THR A 20 ? GLN A 24 THR A 42 1 ? 19 HELX_P HELX_P2 HC SER A 22 ? SER A 31 ? SER A 44 SER A 53 1 ? 10 HELX_P HELX_P3 H2 SER A 32 ? GLN A 59 ? SER A 54 GLN A 81 1 ? 28 HELX_P HELX_P4 H3 GLU A 65 ? VAL A 100 ? GLU A 87 VAL A 122 1 ? 36 HELX_P HELX_P5 H4 THR A 108 ? ALA A 142 ? THR A 130 ALA A 164 1 ? 35 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1LE2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LE2 _atom_sites.fract_transf_matrix[1][1] 0.024355 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018539 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011918 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 23 23 GLY GLY A . n A 1 2 GLN 2 24 24 GLN GLN A . n A 1 3 ARG 3 25 25 ARG ARG A . n A 1 4 TRP 4 26 26 TRP TRP A . n A 1 5 GLU 5 27 27 GLU GLU A . n A 1 6 LEU 6 28 28 LEU LEU A . n A 1 7 ALA 7 29 29 ALA ALA A . n A 1 8 LEU 8 30 30 LEU LEU A . n A 1 9 GLY 9 31 31 GLY GLY A . n A 1 10 ARG 10 32 32 ARG ARG A . n A 1 11 PHE 11 33 33 PHE PHE A . n A 1 12 TRP 12 34 34 TRP TRP A . n A 1 13 ASP 13 35 35 ASP ASP A . n A 1 14 TYR 14 36 36 TYR TYR A . n A 1 15 LEU 15 37 37 LEU LEU A . n A 1 16 ARG 16 38 38 ARG ARG A . n A 1 17 TRP 17 39 39 TRP TRP A . n A 1 18 VAL 18 40 40 VAL VAL A . n A 1 19 GLN 19 41 41 GLN GLN A . n A 1 20 THR 20 42 42 THR THR A . n A 1 21 LEU 21 43 43 LEU LEU A . n A 1 22 SER 22 44 44 SER SER A . n A 1 23 GLU 23 45 45 GLU GLU A . n A 1 24 GLN 24 46 46 GLN GLN A . n A 1 25 VAL 25 47 47 VAL VAL A . n A 1 26 GLN 26 48 48 GLN GLN A . n A 1 27 GLU 27 49 49 GLU GLU A . n A 1 28 GLU 28 50 50 GLU GLU A . n A 1 29 LEU 29 51 51 LEU LEU A . n A 1 30 LEU 30 52 52 LEU LEU A . n A 1 31 SER 31 53 53 SER SER A . n A 1 32 SER 32 54 54 SER SER A . n A 1 33 GLN 33 55 55 GLN GLN A . n A 1 34 VAL 34 56 56 VAL VAL A . n A 1 35 THR 35 57 57 THR THR A . n A 1 36 GLN 36 58 58 GLN GLN A . n A 1 37 GLU 37 59 59 GLU GLU A . n A 1 38 LEU 38 60 60 LEU LEU A . n A 1 39 ARG 39 61 61 ARG ARG A . n A 1 40 ALA 40 62 62 ALA ALA A . n A 1 41 LEU 41 63 63 LEU LEU A . n A 1 42 MET 42 64 64 MET MET A . n A 1 43 ASP 43 65 65 ASP ASP A . n A 1 44 GLU 44 66 66 GLU GLU A . n A 1 45 THR 45 67 67 THR THR A . n A 1 46 MET 46 68 68 MET MET A . n A 1 47 LYS 47 69 69 LYS LYS A . n A 1 48 GLU 48 70 70 GLU GLU A . n A 1 49 LEU 49 71 71 LEU LEU A . n A 1 50 LYS 50 72 72 LYS LYS A . n A 1 51 ALA 51 73 73 ALA ALA A . n A 1 52 TYR 52 74 74 TYR TYR A . n A 1 53 LYS 53 75 75 LYS LYS A . n A 1 54 SER 54 76 76 SER SER A . n A 1 55 GLU 55 77 77 GLU GLU A . n A 1 56 LEU 56 78 78 LEU LEU A . n A 1 57 GLU 57 79 79 GLU GLU A . n A 1 58 GLU 58 80 80 GLU GLU A . n A 1 59 GLN 59 81 81 GLN GLN A . n A 1 60 LEU 60 82 82 LEU LEU A . n A 1 61 THR 61 83 83 THR THR A . n A 1 62 PRO 62 84 84 PRO PRO A . n A 1 63 VAL 63 85 85 VAL VAL A . n A 1 64 ALA 64 86 86 ALA ALA A . n A 1 65 GLU 65 87 87 GLU GLU A . n A 1 66 GLU 66 88 88 GLU GLU A . n A 1 67 THR 67 89 89 THR THR A . n A 1 68 ARG 68 90 90 ARG ARG A . n A 1 69 ALA 69 91 91 ALA ALA A . n A 1 70 ARG 70 92 92 ARG ARG A . n A 1 71 LEU 71 93 93 LEU LEU A . n A 1 72 SER 72 94 94 SER SER A . n A 1 73 LYS 73 95 95 LYS LYS A . n A 1 74 GLU 74 96 96 GLU GLU A . n A 1 75 LEU 75 97 97 LEU LEU A . n A 1 76 GLN 76 98 98 GLN GLN A . n A 1 77 ALA 77 99 99 ALA ALA A . n A 1 78 ALA 78 100 100 ALA ALA A . n A 1 79 GLN 79 101 101 GLN GLN A . n A 1 80 ALA 80 102 102 ALA ALA A . n A 1 81 ARG 81 103 103 ARG ARG A . n A 1 82 LEU 82 104 104 LEU LEU A . n A 1 83 GLY 83 105 105 GLY GLY A . n A 1 84 ALA 84 106 106 ALA ALA A . n A 1 85 ASP 85 107 107 ASP ASP A . n A 1 86 MET 86 108 108 MET MET A . n A 1 87 GLU 87 109 109 GLU GLU A . n A 1 88 ASP 88 110 110 ASP ASP A . n A 1 89 VAL 89 111 111 VAL VAL A . n A 1 90 CYS 90 112 112 CYS CYS A . n A 1 91 GLY 91 113 113 GLY GLY A . n A 1 92 ARG 92 114 114 ARG ARG A . n A 1 93 LEU 93 115 115 LEU LEU A . n A 1 94 VAL 94 116 116 VAL VAL A . n A 1 95 GLN 95 117 117 GLN GLN A . n A 1 96 TYR 96 118 118 TYR TYR A . n A 1 97 ARG 97 119 119 ARG ARG A . n A 1 98 GLY 98 120 120 GLY GLY A . n A 1 99 GLU 99 121 121 GLU GLU A . n A 1 100 VAL 100 122 122 VAL VAL A . n A 1 101 GLN 101 123 123 GLN GLN A . n A 1 102 ALA 102 124 124 ALA ALA A . n A 1 103 MET 103 125 125 MET MET A . n A 1 104 LEU 104 126 126 LEU LEU A . n A 1 105 GLY 105 127 127 GLY GLY A . n A 1 106 GLN 106 128 128 GLN GLN A . n A 1 107 SER 107 129 129 SER SER A . n A 1 108 THR 108 130 130 THR THR A . n A 1 109 GLU 109 131 131 GLU GLU A . n A 1 110 GLU 110 132 132 GLU GLU A . n A 1 111 LEU 111 133 133 LEU LEU A . n A 1 112 ARG 112 134 134 ARG ARG A . n A 1 113 VAL 113 135 135 VAL VAL A . n A 1 114 ARG 114 136 136 ARG ARG A . n A 1 115 LEU 115 137 137 LEU LEU A . n A 1 116 ALA 116 138 138 ALA ALA A . n A 1 117 SER 117 139 139 SER SER A . n A 1 118 HIS 118 140 140 HIS HIS A . n A 1 119 LEU 119 141 141 LEU LEU A . n A 1 120 ARG 120 142 142 ARG ARG A . n A 1 121 LYS 121 143 143 LYS LYS A . n A 1 122 LEU 122 144 144 LEU LEU A . n A 1 123 ARG 123 145 145 ARG ARG A . n A 1 124 LYS 124 146 146 LYS LYS A . n A 1 125 ARG 125 147 147 ARG ARG A . n A 1 126 LEU 126 148 148 LEU LEU A . n A 1 127 LEU 127 149 149 LEU LEU A . n A 1 128 ARG 128 150 150 ARG ARG A . n A 1 129 ASP 129 151 151 ASP ASP A . n A 1 130 ALA 130 152 152 ALA ALA A . n A 1 131 ASP 131 153 153 ASP ASP A . n A 1 132 ASP 132 154 154 ASP ASP A . n A 1 133 LEU 133 155 155 LEU LEU A . n A 1 134 GLN 134 156 156 GLN GLN A . n A 1 135 LYS 135 157 157 LYS LYS A . n A 1 136 CYS 136 158 158 CYS CYS A . n A 1 137 LEU 137 159 159 LEU LEU A . n A 1 138 ALA 138 160 160 ALA ALA A . n A 1 139 VAL 139 161 161 VAL VAL A . n A 1 140 TYR 140 162 162 TYR TYR A . n A 1 141 GLN 141 163 163 GLN GLN A . n A 1 142 ALA 142 164 164 ALA ALA A . n A 1 143 GLY 143 165 165 GLY GLY A . n A 1 144 ALA 144 166 166 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-10-15 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 1LE2 _pdbx_entry_details.compound_details ;THREE ISOFORMS OF APO-E ARE RELATIVELY COMMON. THE APO-E2 ISOFORM DIFFERS FROM THE WILD-TYPE (E3) PROTEIN BY THE MUTATION ARG158-->CYS. THE MUTANT PROTEIN SHOWS NORMAL LIPOPROTEIN BINDING BUT LESS THAN 2% OF NORMAL LDL RECEPTOR BINDING. THE STRUCTURE OF THE E2 MUTANT WAS DETERMINED USING STARTING PHASES OBTAINED FOR THE E3 PROTEIN. SECONDARY STRUCTURE WAS ASSIGNED USING THE *DEFINE* PROGRAM (RICHARDS AND KUNDROT, PROTEINS V. 3, 71 (1988)). ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 NE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 140 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 140 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.305 _pdbx_validate_rmsd_bond.bond_target_value 1.373 _pdbx_validate_rmsd_bond.bond_deviation -0.068 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 25 ? ? CZ A ARG 25 ? ? NH2 A ARG 25 ? ? 116.83 120.30 -3.47 0.50 N 2 1 CD1 A TRP 26 ? ? CG A TRP 26 ? ? CD2 A TRP 26 ? ? 112.41 106.30 6.11 0.80 N 3 1 CE2 A TRP 26 ? ? CD2 A TRP 26 ? ? CG A TRP 26 ? ? 101.14 107.30 -6.16 0.80 N 4 1 NE A ARG 32 ? ? CZ A ARG 32 ? ? NH1 A ARG 32 ? ? 123.64 120.30 3.34 0.50 N 5 1 CD1 A TRP 34 ? ? CG A TRP 34 ? ? CD2 A TRP 34 ? ? 112.59 106.30 6.29 0.80 N 6 1 CE2 A TRP 34 ? ? CD2 A TRP 34 ? ? CG A TRP 34 ? ? 100.69 107.30 -6.61 0.80 N 7 1 CD1 A TRP 39 ? ? CG A TRP 39 ? ? CD2 A TRP 39 ? ? 112.95 106.30 6.65 0.80 N 8 1 CG A TRP 39 ? ? CD1 A TRP 39 ? ? NE1 A TRP 39 ? ? 104.09 110.10 -6.01 1.00 N 9 1 CE2 A TRP 39 ? ? CD2 A TRP 39 ? ? CG A TRP 39 ? ? 101.70 107.30 -5.60 0.80 N 10 1 NE A ARG 61 ? ? CZ A ARG 61 ? ? NH1 A ARG 61 ? ? 123.95 120.30 3.65 0.50 N 11 1 CG1 A VAL 85 ? ? CB A VAL 85 ? ? CG2 A VAL 85 ? ? 96.87 110.90 -14.03 1.60 N 12 1 NE A ARG 103 ? ? CZ A ARG 103 ? ? NH1 A ARG 103 ? ? 125.49 120.30 5.19 0.50 N 13 1 NE A ARG 103 ? ? CZ A ARG 103 ? ? NH2 A ARG 103 ? ? 116.56 120.30 -3.74 0.50 N 14 1 CA A MET 108 ? ? CB A MET 108 ? ? CG A MET 108 ? ? 125.72 113.30 12.42 1.70 N 15 1 NE A ARG 114 ? ? CZ A ARG 114 ? ? NH2 A ARG 114 ? ? 116.23 120.30 -4.07 0.50 N 16 1 CA A LEU 126 ? ? C A LEU 126 ? ? N A GLY 127 ? ? 103.01 116.20 -13.19 2.00 Y 17 1 NE A ARG 134 ? ? CZ A ARG 134 ? ? NH1 A ARG 134 ? ? 124.18 120.30 3.88 0.50 N 18 1 NE A ARG 134 ? ? CZ A ARG 134 ? ? NH2 A ARG 134 ? ? 116.83 120.30 -3.47 0.50 N 19 1 NE A ARG 136 ? ? CZ A ARG 136 ? ? NH2 A ARG 136 ? ? 116.58 120.30 -3.72 0.50 N 20 1 CA A ARG 142 ? ? CB A ARG 142 ? ? CG A ARG 142 ? ? 129.29 113.40 15.89 2.20 N 21 1 NE A ARG 145 ? ? CZ A ARG 145 ? ? NH1 A ARG 145 ? ? 123.87 120.30 3.57 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 43 ? ? 70.13 40.64 2 1 VAL A 47 ? ? -58.69 -73.83 3 1 SER A 53 ? ? -108.90 -104.62 4 1 SER A 54 ? ? -140.10 -36.49 5 1 GLU A 87 ? ? 8.18 -35.07 6 1 ALA A 91 ? ? -76.29 -71.08 7 1 SER A 94 ? ? -60.58 -72.26 8 1 GLN A 128 ? ? 20.64 -96.76 9 1 SER A 129 ? ? -176.15 124.24 10 1 ALA A 164 ? ? -145.63 -10.58 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 THR _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 83 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 84 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -123.97 #