HEADER SIGNALING PROTEIN 10-APR-02 1LF5 TITLE CRYSTAL STRUCTURE OF RASA59G IN THE GDP-BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN P21/H-RAS-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-166; COMPND 5 SYNONYM: C-H-RAS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS RAS, GTPASE, GDP, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.E.HALL,D.BAR-SAGI,N.NASSAR REVDAT 5 16-AUG-23 1LF5 1 REMARK REVDAT 4 27-OCT-21 1LF5 1 REMARK SEQADV LINK ATOM REVDAT 3 16-NOV-11 1LF5 1 VERSN HETATM REVDAT 2 24-FEB-09 1LF5 1 VERSN REVDAT 1 06-NOV-02 1LF5 0 JRNL AUTH B.E.HALL,D.BAR-SAGI,N.NASSAR JRNL TITL THE STRUCTURAL BASIS FOR THE TRANSITION FROM RAS-GTP TO JRNL TITL 2 RAS-GDP JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 12138 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12213964 JRNL DOI 10.1073/PNAS.192453199 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 19418557.070 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 21885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2177 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3045 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 369 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.74000 REMARK 3 B22 (A**2) : -4.74000 REMARK 3 B33 (A**2) : 9.47000 REMARK 3 B12 (A**2) : -2.88000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 74.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GDP.PAR REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : GDP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 267511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19600 REMARK 200 R SYM FOR SHELL (I) : 0.19600 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 4Q21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, CALCIUM ACETATE, TRIS, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.55600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.87912 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.10033 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.55600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.87912 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.10033 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.55600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.87912 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.10033 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.55600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.87912 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.10033 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.55600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.87912 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.10033 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.55600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.87912 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.10033 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.75824 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.20067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.75824 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 80.20067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.75824 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.20067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.75824 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.20067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.75824 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 80.20067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.75824 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 80.20067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 359 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 386 LIES ON A SPECIAL POSITION. REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN A 61 REMARK 475 GLU A 62 REMARK 475 GLU A 63 REMARK 475 TYR A 64 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 25 CG CD OE1 NE2 REMARK 480 GLU A 31 CG CD OE1 OE2 REMARK 480 PRO A 34 CB CG REMARK 480 GLU A 37 CG CD OE1 OE2 REMARK 480 GLY A 60 CA C O REMARK 480 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 99 CG CD OE1 NE2 REMARK 480 ARG A 102 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 391 O HOH A 391 10455 1.18 REMARK 500 O HOH A 393 O HOH A 393 17555 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 104.47 -34.37 REMARK 500 ARG A 149 -8.41 84.59 REMARK 500 ARG A 149 -3.29 79.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 273 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 180 O2B 91.3 REMARK 620 3 HOH A 301 O 175.4 86.9 REMARK 620 4 HOH A 302 O 84.3 90.2 91.4 REMARK 620 5 HOH A 303 O 89.9 166.1 92.9 103.7 REMARK 620 6 HOH A 338 O 93.4 86.9 90.7 176.2 79.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 180 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q21 RELATED DB: PDB REMARK 900 STRUCTURE OF WILD-TYPE RAS IN THE GDP-BOUND FORM REMARK 900 RELATED ID: 1LF0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RASA59G IN THE GTP-BOUND FORM DBREF 1LF5 A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 1LF5 GLY A 59 UNP P01112 ALA 59 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR GLY GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET MG A 273 1 HET GDP A 180 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *87(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 SER A 65 GLY A 75 1 11 HELIX 3 3 ASN A 86 ASP A 105 1 20 HELIX 4 4 GLU A 126 GLY A 138 1 13 HELIX 5 5 GLY A 151 HIS A 166 1 16 SHEET 1 A 6 ASP A 38 ILE A 46 0 SHEET 2 A 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 A 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 273 1555 1555 2.21 LINK O2B GDP A 180 MG MG A 273 1555 1555 2.24 LINK MG MG A 273 O HOH A 301 1555 1555 2.35 LINK MG MG A 273 O HOH A 302 1555 1555 2.35 LINK MG MG A 273 O HOH A 303 1555 1555 2.35 LINK MG MG A 273 O HOH A 338 1555 1555 2.35 SITE 1 AC1 6 SER A 17 GDP A 180 HOH A 301 HOH A 302 SITE 2 AC1 6 HOH A 303 HOH A 338 SITE 1 AC2 23 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 23 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC2 23 ASP A 30 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC2 23 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC2 23 MG A 273 HOH A 301 HOH A 306 HOH A 337 SITE 6 AC2 23 HOH A 338 HOH A 347 HOH A 375 CRYST1 93.112 93.112 120.301 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010740 0.006201 0.000000 0.00000 SCALE2 0.000000 0.012401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008312 0.00000 TER 1360 HIS A 166 HETATM 1361 MG MG A 273 -7.970 16.479 18.656 1.00 24.28 MG HETATM 1362 PB GDP A 180 -7.479 14.324 21.366 1.00 22.87 P HETATM 1363 O1B GDP A 180 -6.405 14.378 22.376 1.00 21.44 O HETATM 1364 O2B GDP A 180 -7.862 15.548 20.688 1.00 21.47 O HETATM 1365 O3B GDP A 180 -7.098 13.252 20.312 1.00 24.39 O HETATM 1366 O3A GDP A 180 -8.806 13.670 21.984 1.00 23.67 O HETATM 1367 PA GDP A 180 -10.361 14.137 21.899 1.00 25.72 P HETATM 1368 O1A GDP A 180 -10.576 15.476 22.491 1.00 24.10 O HETATM 1369 O2A GDP A 180 -10.791 13.874 20.523 1.00 27.66 O HETATM 1370 O5' GDP A 180 -10.985 13.009 22.872 1.00 24.72 O HETATM 1371 C5' GDP A 180 -10.890 11.617 22.500 1.00 26.13 C HETATM 1372 C4' GDP A 180 -12.058 10.851 23.099 1.00 25.13 C HETATM 1373 O4' GDP A 180 -12.013 10.980 24.509 1.00 24.96 O HETATM 1374 C3' GDP A 180 -13.411 11.385 22.656 1.00 26.11 C HETATM 1375 O3' GDP A 180 -14.253 10.293 22.366 1.00 29.13 O HETATM 1376 C2' GDP A 180 -13.902 12.252 23.835 1.00 26.24 C HETATM 1377 O2' GDP A 180 -15.334 12.370 23.954 1.00 29.67 O HETATM 1378 C1' GDP A 180 -13.224 11.548 24.999 1.00 26.04 C HETATM 1379 N9 GDP A 180 -12.845 12.431 26.108 1.00 23.34 N HETATM 1380 C8 GDP A 180 -12.035 13.535 26.149 1.00 22.82 C HETATM 1381 N7 GDP A 180 -11.892 14.083 27.311 1.00 22.16 N HETATM 1382 C5 GDP A 180 -12.661 13.276 28.131 1.00 20.81 C HETATM 1383 C6 GDP A 180 -12.900 13.352 29.551 1.00 19.18 C HETATM 1384 O6 GDP A 180 -12.450 14.179 30.351 1.00 21.13 O HETATM 1385 N1 GDP A 180 -13.756 12.314 30.004 1.00 22.30 N HETATM 1386 C2 GDP A 180 -14.320 11.316 29.193 1.00 20.18 C HETATM 1387 N2 GDP A 180 -15.098 10.417 29.787 1.00 23.33 N HETATM 1388 N3 GDP A 180 -14.094 11.243 27.863 1.00 21.24 N HETATM 1389 C4 GDP A 180 -13.260 12.250 27.401 1.00 22.03 C HETATM 1390 O HOH A 301 -6.633 14.694 17.908 1.00 30.39 O HETATM 1391 O HOH A 302 -6.068 17.778 19.143 1.00 29.37 O HETATM 1392 O HOH A 303 -8.539 17.123 16.473 1.00 35.98 O HETATM 1393 O HOH A 304 0.633 16.808 20.325 1.00 22.79 O HETATM 1394 O HOH A 305 0.123 12.013 26.089 1.00 18.04 O HETATM 1395 O HOH A 306 -9.064 11.393 19.002 1.00 30.22 O HETATM 1396 O HOH A 307 -15.346 19.428 24.844 1.00 28.25 O HETATM 1397 O HOH A 308 -19.555 29.497 26.366 1.00 39.11 O HETATM 1398 O HOH A 309 -8.768 35.370 38.218 1.00 29.37 O HETATM 1399 O HOH A 310 -9.722 38.051 38.131 1.00 28.36 O HETATM 1400 O HOH A 311 -8.242 7.378 27.365 1.00 22.76 O HETATM 1401 O HOH A 312 -1.967 2.034 27.534 1.00 18.64 O HETATM 1402 O HOH A 313 10.736 11.633 31.854 1.00 28.37 O HETATM 1403 O HOH A 314 9.903 23.302 32.159 1.00 25.84 O HETATM 1404 O HOH A 315 5.839 25.391 34.491 1.00 22.94 O HETATM 1405 O HOH A 316 -18.089 9.783 33.139 1.00 31.26 O HETATM 1406 O HOH A 317 -2.232 0.627 36.486 1.00 29.36 O HETATM 1407 O HOH A 318 -12.971 22.530 38.855 1.00 26.39 O HETATM 1408 O HOH A 319 -13.107 24.384 35.125 1.00 20.26 O HETATM 1409 O HOH A 320 -10.956 24.452 37.092 1.00 22.94 O HETATM 1410 O HOH A 321 12.955 16.655 31.364 1.00 27.39 O HETATM 1411 O HOH A 322 12.153 14.668 29.810 1.00 42.36 O HETATM 1412 O HOH A 323 -16.235 4.925 34.072 1.00 34.70 O HETATM 1413 O HOH A 324 -4.408 8.028 42.450 1.00 26.06 O HETATM 1414 O HOH A 325 -6.674 4.287 42.127 1.00 40.51 O HETATM 1415 O HOH A 326 -0.789 2.745 38.294 1.00 29.79 O HETATM 1416 O HOH A 327 -0.057 0.005 37.669 0.33 18.63 O HETATM 1417 O HOH A 328 8.531 25.452 34.679 1.00 26.46 O HETATM 1418 O HOH A 329 9.933 24.967 36.759 1.00 35.19 O HETATM 1419 O HOH A 330 1.865 19.884 41.287 1.00 23.03 O HETATM 1420 O HOH A 331 -0.242 18.218 41.848 1.00 22.17 O HETATM 1421 O HOH A 332 -8.260 19.365 39.470 1.00 25.97 O HETATM 1422 O HOH A 335 2.018 9.835 21.432 1.00 33.68 O HETATM 1423 O HOH A 336 -0.598 9.162 19.731 1.00 39.83 O HETATM 1424 O HOH A 337 -12.993 8.756 26.789 1.00 26.73 O HETATM 1425 O HOH A 338 -9.915 15.204 18.315 1.00 32.05 O HETATM 1426 O HOH A 339 -13.699 35.147 24.247 1.00 27.59 O HETATM 1427 O HOH A 340 -5.679 2.844 26.387 1.00 27.00 O HETATM 1428 O HOH A 341 -7.637 4.613 27.163 1.00 22.23 O HETATM 1429 O HOH A 342 -3.012 3.368 25.172 1.00 30.75 O HETATM 1430 O HOH A 343 -9.486 13.905 40.048 1.00 29.28 O HETATM 1431 O HOH A 344 -2.125 8.460 44.091 1.00 23.39 O HETATM 1432 O HOH A 345 10.504 23.435 34.791 1.00 28.80 O HETATM 1433 O HOH A 346 -1.807 43.341 34.429 1.00 41.07 O HETATM 1434 O HOH A 347 -12.466 12.373 18.893 1.00 42.36 O HETATM 1435 O HOH A 348 -11.399 31.165 18.064 1.00 29.66 O HETATM 1436 O HOH A 349 18.760 21.886 22.601 1.00 37.18 O HETATM 1437 O HOH A 350 -6.415 8.292 25.815 1.00 34.92 O HETATM 1438 O HOH A 351 9.299 27.870 33.356 1.00 36.92 O HETATM 1439 O HOH A 352 7.806 29.609 34.817 1.00 39.72 O HETATM 1440 O HOH A 353 -12.640 3.726 32.512 1.00 41.59 O HETATM 1441 O HOH A 354 4.497 17.713 41.657 1.00 36.73 O HETATM 1442 O HOH A 355 9.917 13.222 41.292 1.00 36.19 O HETATM 1443 O HOH A 356 6.820 25.356 38.189 1.00 32.73 O HETATM 1444 O HOH A 357 13.887 15.889 33.825 1.00 35.76 O HETATM 1445 O HOH A 358 -2.986 28.591 39.514 1.00 36.26 O HETATM 1446 O HOH A 359 4.684 26.866 40.075 0.50 34.08 O HETATM 1447 O HOH A 361 7.829 31.074 27.401 1.00 34.48 O HETATM 1448 O HOH A 362 -7.428 2.285 40.196 1.00 34.36 O HETATM 1449 O HOH A 363 -3.825 2.988 38.950 1.00 29.98 O HETATM 1450 O HOH A 364 -0.897 6.267 44.987 1.00 34.83 O HETATM 1451 O HOH A 365 -6.934 8.509 43.161 1.00 41.10 O HETATM 1452 O HOH A 366 -8.606 21.938 40.096 1.00 29.26 O HETATM 1453 O HOH A 367 -0.206 29.183 39.554 1.00 28.48 O HETATM 1454 O HOH A 368 0.341 3.321 35.099 1.00 34.91 O HETATM 1455 O HOH A 369 5.685 5.873 25.016 1.00 37.63 O HETATM 1456 O HOH A 370 6.572 10.013 30.471 1.00 35.51 O HETATM 1457 O HOH A 371 -11.425 6.246 27.479 1.00 30.69 O HETATM 1458 O HOH A 372 -21.519 19.295 22.280 1.00 60.46 O HETATM 1459 O HOH A 373 -8.434 21.612 16.620 1.00 53.51 O HETATM 1460 O HOH A 374 -9.249 43.627 33.898 1.00 46.71 O HETATM 1461 O HOH A 375 15.885 10.184 28.106 1.00 40.02 O HETATM 1462 O HOH A 376 -10.745 2.822 30.879 1.00 39.18 O HETATM 1463 O HOH A 377 -15.301 15.637 37.700 1.00 42.53 O HETATM 1464 O HOH A 378 -15.061 25.844 35.845 1.00 34.85 O HETATM 1465 O HOH A 379 -8.913 9.045 41.843 1.00 47.28 O HETATM 1466 O HOH A 380 -10.578 6.702 38.579 1.00 39.25 O HETATM 1467 O HOH A 382 0.740 41.302 31.766 1.00 42.10 O HETATM 1468 O HOH A 383 -14.559 17.112 21.698 1.00 44.38 O HETATM 1469 O HOH A 384 -1.542 20.400 14.651 1.00 47.76 O HETATM 1470 O HOH A 385 -5.484 31.405 18.027 1.00 49.88 O HETATM 1471 O HOH A 386 -0.048 0.031 24.337 0.33 30.65 O HETATM 1472 O HOH A 387 15.488 17.305 24.525 1.00 40.67 O HETATM 1473 O HOH A 388 17.737 22.912 19.833 0.50 55.82 O HETATM 1474 O HOH A 391 -17.424 24.254 20.535 1.00 48.78 O HETATM 1475 O HOH A 392 -9.869 1.747 33.119 1.00 46.11 O HETATM 1476 O HOH A 393 7.959 26.362 40.511 1.00 43.72 O CONECT 117 1361 CONECT 1361 117 1364 1390 1391 CONECT 1361 1392 1425 CONECT 1362 1363 1364 1365 1366 CONECT 1363 1362 CONECT 1364 1361 1362 CONECT 1365 1362 CONECT 1366 1362 1367 CONECT 1367 1366 1368 1369 1370 CONECT 1368 1367 CONECT 1369 1367 CONECT 1370 1367 1371 CONECT 1371 1370 1372 CONECT 1372 1371 1373 1374 CONECT 1373 1372 1378 CONECT 1374 1372 1375 1376 CONECT 1375 1374 CONECT 1376 1374 1377 1378 CONECT 1377 1376 CONECT 1378 1373 1376 1379 CONECT 1379 1378 1380 1389 CONECT 1380 1379 1381 CONECT 1381 1380 1382 CONECT 1382 1381 1383 1389 CONECT 1383 1382 1384 1385 CONECT 1384 1383 CONECT 1385 1383 1386 CONECT 1386 1385 1387 1388 CONECT 1387 1386 CONECT 1388 1386 1389 CONECT 1389 1379 1382 1388 CONECT 1390 1361 CONECT 1391 1361 CONECT 1392 1361 CONECT 1425 1361 MASTER 378 0 2 5 6 0 8 6 1438 1 35 13 END