HEADER LECTIN 07-JAN-94 1LGC TITLE INTERACTION OF A LEGUME LECTIN WITH THE N2 FRAGMENT OF HUMAN TITLE 2 LACTOTRANSFERRIN OR WITH THE ISOLATED BIANTENNARY GLYCOPEPTIDE: ROLE TITLE 3 OF THE FUCOSE MOIETY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN BETA-1 AND BETA-2 CHAINS; COMPND 3 CHAIN: A, C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DIPEPTIDE; COMPND 7 CHAIN: H, I, J; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MANNOSE/GLUCOSE-SPECIFIC LECTIN ALPHA 2 CHAIN; COMPND 11 CHAIN: B, D, F; COMPND 12 SYNONYM: LOL II; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LATHYRUS OCHRUS; SOURCE 3 ORGANISM_COMMON: YELLOW-FLOWERED PEA; SOURCE 4 ORGANISM_TAXID: 3858; SOURCE 5 MOL_ID: 2; SOURCE 6 MOL_ID: 3 KEYWDS LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.BOURNE,C.CAMBILLAU REVDAT 7 20-NOV-24 1LGC 1 COMPND SOURCE DBREF SEQADV REVDAT 7 2 1 HETSYN ATOM REVDAT 6 29-JUL-20 1LGC 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 HELIX LINK SITE ATOM REVDAT 5 13-JUL-11 1LGC 1 VERSN REVDAT 4 25-AUG-09 1LGC 1 SOURCE REVDAT 3 24-FEB-09 1LGC 1 VERSN REVDAT 2 15-MAY-95 1LGC 3 SEQRES SHEET TURN ATOM REVDAT 1 31-AUG-94 1LGC 0 JRNL AUTH Y.BOURNE,J.MAZURIER,D.LEGRAND,P.ROUGE,J.MONTREUIL,G.SPIK, JRNL AUTH 2 C.CAMBILLAU JRNL TITL STRUCTURES OF A LEGUME LECTIN COMPLEXED WITH THE HUMAN JRNL TITL 2 LACTOTRANSFERRIN N2 FRAGMENT, AND WITH AN ISOLATED JRNL TITL 3 BIANTENNARY GLYCOPEPTIDE: ROLE OF THE FUCOSE MOIETY. JRNL REF STRUCTURE V. 2 209 1994 JRNL REFN ISSN 0969-2126 JRNL PMID 8069634 JRNL DOI 10.1016/S0969-2126(00)00022-8 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5397 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 366 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.05000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.50000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.07500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.50000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.02500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.07500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.02500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, B, C, I, D, G, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, J, F, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.10000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 513 REMARK 465 SER B 52 REMARK 465 ASN B 53 REMARK 465 GLN I 513 REMARK 465 THR D 49 REMARK 465 SER D 50 REMARK 465 SER D 51 REMARK 465 SER D 52 REMARK 465 ASN D 53 REMARK 465 GLU F 1 REMARK 465 THR F 49 REMARK 465 SER F 50 REMARK 465 SER F 51 REMARK 465 SER F 52 REMARK 465 ASN F 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 51 CA C O CB OG REMARK 470 SER D 47 OG REMARK 470 VAL D 48 CA C O CB CG1 CG2 REMARK 470 ASN E 75 CG OD1 ND2 REMARK 470 TYR E 77 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER F 47 OG REMARK 470 VAL F 48 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 16 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 9 16.67 -143.47 REMARK 500 LYS A 10 98.21 -167.32 REMARK 500 LYS A 56 20.39 -71.29 REMARK 500 THR A 57 -37.28 -149.29 REMARK 500 GLN A 95 -153.48 -99.23 REMARK 500 LEU A 101 8.32 47.97 REMARK 500 TRP A 128 -11.35 -153.19 REMARK 500 ASN A 148 145.43 -173.90 REMARK 500 THR B 2 147.10 179.87 REMARK 500 THR B 49 130.90 -173.38 REMARK 500 ASN C 17 33.14 -81.64 REMARK 500 LYS C 28 78.11 62.87 REMARK 500 GLU C 29 -12.41 61.49 REMARK 500 ASN C 39 103.53 47.82 REMARK 500 GLN C 95 -150.35 -109.75 REMARK 500 SER C 106 162.27 61.47 REMARK 500 GLN C 114 23.93 48.46 REMARK 500 ALA C 127 17.26 -67.56 REMARK 500 TRP C 128 -11.54 -161.31 REMARK 500 ASP C 134 115.59 43.69 REMARK 500 SER C 146 141.76 -36.97 REMARK 500 GLN C 155 77.53 -109.47 REMARK 500 ASN C 156 139.07 -38.98 REMARK 500 ASN C 171 35.57 39.06 REMARK 500 PRO C 180 -9.55 -48.54 REMARK 500 LEU D 6 112.50 -169.62 REMARK 500 PHE D 15 -58.05 -120.40 REMARK 500 PHE E 11 92.50 -65.50 REMARK 500 GLN E 15 75.71 -150.29 REMARK 500 TYR E 25 -146.85 -119.44 REMARK 500 THR E 27 148.68 -172.96 REMARK 500 ALA E 36 80.80 -44.58 REMARK 500 ASN E 39 47.16 10.83 REMARK 500 PRO E 74 21.56 -68.72 REMARK 500 ASN E 75 129.66 173.81 REMARK 500 TYR E 77 -76.59 -75.71 REMARK 500 ASN E 78 31.98 -72.99 REMARK 500 GLN E 95 -156.69 -125.86 REMARK 500 PHE E 120 70.22 -117.33 REMARK 500 ASN E 148 126.12 164.26 REMARK 500 THR E 149 -169.75 -127.08 REMARK 500 LYS E 150 121.19 -172.51 REMARK 500 ASN E 156 104.48 -37.28 REMARK 500 THR E 178 84.83 -151.23 REMARK 500 PRO E 180 104.74 -53.58 REMARK 500 ALA F 33 150.70 179.51 REMARK 500 GLU F 45 106.48 -176.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD1 REMARK 620 2 ASP A 81 OD2 40.9 REMARK 620 3 ASP A 121 OD2 98.8 139.4 REMARK 620 4 ASP A 121 OD1 68.8 101.7 53.3 REMARK 620 5 PHE A 123 O 129.1 111.3 98.8 85.0 REMARK 620 6 ASN A 125 OD1 122.0 89.0 119.2 169.0 88.6 REMARK 620 7 ASP A 129 OD2 156.3 149.2 64.9 109.1 72.7 60.3 REMARK 620 8 HOH A 374 O 73.1 91.4 65.4 97.8 156.1 84.5 84.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE2 REMARK 620 2 ASP A 129 OD1 145.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 121 OD1 REMARK 620 2 ASP C 121 OD2 52.3 REMARK 620 3 PHE C 123 O 73.8 79.8 REMARK 620 4 ASN C 125 OD1 149.0 102.7 84.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 81 OD1 REMARK 620 2 ASP E 121 OD2 112.7 REMARK 620 3 ASP E 121 OD1 88.4 51.7 REMARK 620 4 PHE E 123 O 140.1 84.2 73.9 REMARK 620 5 ASN E 125 OD1 114.5 101.6 151.5 95.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 119 OE2 REMARK 620 2 ASP E 121 OD2 102.1 REMARK 620 3 ASP E 129 OD1 169.2 81.7 REMARK 620 4 HOH E 324 O 80.9 168.5 93.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: A1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: MANNOSE (MAN 4) BINDING SITE 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: B1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: FUCOSE (FUC 1) BINDING CAVITY 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: A2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: MANNOSE (MAN 4) BINDING SITE 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: B2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: FUCOSE (FUC 1) BINDING CAVITY 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: A3 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: MANNOSE (MAN 4) BINDING SITE 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: B3 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: FUCOSE (FUC 1) BINDING CAVITY 3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ADVISORY NOTICE: REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: LECB_LATOC REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 GLN 16 PRO A 16 REMARK 999 ALA 168 GLY A 168 REMARK 999 GLN 16 PRO C 16 REMARK 999 ALA 168 GLY C 168 REMARK 999 GLN 16 PRO E 16 REMARK 999 ALA 168 GLY E 168 DBREF 1LGC A 1 181 UNP P04122 LECB_LATOC 1 181 DBREF 1LGC H 512 513 PDB 1LGC 1LGC 512 513 DBREF 1LGC B 1 53 UNP P12307 LEC2_LATOC 1 53 DBREF 1LGC C 1 181 UNP P04122 LECB_LATOC 1 181 DBREF 1LGC I 512 513 PDB 1LGC 1LGC 512 513 DBREF 1LGC D 1 53 UNP P12307 LEC2_LATOC 1 53 DBREF 1LGC E 1 181 UNP P04122 LECB_LATOC 1 181 DBREF 1LGC J 512 513 PDB 1LGC 1LGC 512 513 DBREF 1LGC F 1 53 UNP P12307 LEC2_LATOC 1 53 SEQADV 1LGC PRO A 16 UNP P04122 GLN 16 VARIANT SEQADV 1LGC GLY A 168 UNP P04122 ALA 168 VARIANT SEQADV 1LGC PRO C 16 UNP P04122 GLN 16 VARIANT SEQADV 1LGC GLY C 168 UNP P04122 ALA 168 VARIANT SEQADV 1LGC PRO E 16 UNP P04122 GLN 16 VARIANT SEQADV 1LGC GLY E 168 UNP P04122 ALA 168 VARIANT SEQRES 1 A 181 THR GLU THR THR SER PHE SER ILE THR LYS PHE GLY PRO SEQRES 2 A 181 ASP GLN PRO ASN LEU ILE PHE GLN GLY ASP GLY TYR THR SEQRES 3 A 181 THR LYS GLU ARG LEU THR LEU THR LYS ALA VAL ARG ASN SEQRES 4 A 181 THR VAL GLY ARG ALA LEU TYR SER SER PRO ILE HIS ILE SEQRES 5 A 181 TRP ASP SER LYS THR GLY ASN VAL ALA ASN PHE VAL THR SEQRES 6 A 181 SER PHE THR PHE VAL ILE ASP ALA PRO ASN SER TYR ASN SEQRES 7 A 181 VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL ASP SEQRES 8 A 181 THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL PHE SEQRES 9 A 181 ASN SER LYS ASP TYR ASP LYS THR SER GLN THR VAL ALA SEQRES 10 A 181 VAL GLU PHE ASP THR PHE TYR ASN THR ALA TRP ASP PRO SEQRES 11 A 181 SER ASN GLY ASP ARG HIS ILE GLY ILE ASP VAL ASN SER SEQRES 12 A 181 ILE LYS SER ILE ASN THR LYS SER TRP LYS LEU GLN ASN SEQRES 13 A 181 GLY LYS GLU ALA ASN VAL VAL ILE ALA PHE ASN GLY ALA SEQRES 14 A 181 THR ASN VAL LEU THR VAL SER LEU THR TYR PRO ASN SEQRES 1 H 2 ASN GLN SEQRES 1 B 53 GLU THR SER TYR THR LEU ASN GLU VAL VAL PRO LEU LYS SEQRES 2 B 53 GLU PHE VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 B 53 THR THR GLY ALA GLU PHE ALA ALA HIS GLU VAL LEU SER SEQRES 4 B 53 TRP TYR PHE ASN SER GLU LEU SER VAL THR SER SER SER SEQRES 5 B 53 ASN SEQRES 1 C 181 THR GLU THR THR SER PHE SER ILE THR LYS PHE GLY PRO SEQRES 2 C 181 ASP GLN PRO ASN LEU ILE PHE GLN GLY ASP GLY TYR THR SEQRES 3 C 181 THR LYS GLU ARG LEU THR LEU THR LYS ALA VAL ARG ASN SEQRES 4 C 181 THR VAL GLY ARG ALA LEU TYR SER SER PRO ILE HIS ILE SEQRES 5 C 181 TRP ASP SER LYS THR GLY ASN VAL ALA ASN PHE VAL THR SEQRES 6 C 181 SER PHE THR PHE VAL ILE ASP ALA PRO ASN SER TYR ASN SEQRES 7 C 181 VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL ASP SEQRES 8 C 181 THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL PHE SEQRES 9 C 181 ASN SER LYS ASP TYR ASP LYS THR SER GLN THR VAL ALA SEQRES 10 C 181 VAL GLU PHE ASP THR PHE TYR ASN THR ALA TRP ASP PRO SEQRES 11 C 181 SER ASN GLY ASP ARG HIS ILE GLY ILE ASP VAL ASN SER SEQRES 12 C 181 ILE LYS SER ILE ASN THR LYS SER TRP LYS LEU GLN ASN SEQRES 13 C 181 GLY LYS GLU ALA ASN VAL VAL ILE ALA PHE ASN GLY ALA SEQRES 14 C 181 THR ASN VAL LEU THR VAL SER LEU THR TYR PRO ASN SEQRES 1 I 2 ASN GLN SEQRES 1 D 53 GLU THR SER TYR THR LEU ASN GLU VAL VAL PRO LEU LYS SEQRES 2 D 53 GLU PHE VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 D 53 THR THR GLY ALA GLU PHE ALA ALA HIS GLU VAL LEU SER SEQRES 4 D 53 TRP TYR PHE ASN SER GLU LEU SER VAL THR SER SER SER SEQRES 5 D 53 ASN SEQRES 1 E 181 THR GLU THR THR SER PHE SER ILE THR LYS PHE GLY PRO SEQRES 2 E 181 ASP GLN PRO ASN LEU ILE PHE GLN GLY ASP GLY TYR THR SEQRES 3 E 181 THR LYS GLU ARG LEU THR LEU THR LYS ALA VAL ARG ASN SEQRES 4 E 181 THR VAL GLY ARG ALA LEU TYR SER SER PRO ILE HIS ILE SEQRES 5 E 181 TRP ASP SER LYS THR GLY ASN VAL ALA ASN PHE VAL THR SEQRES 6 E 181 SER PHE THR PHE VAL ILE ASP ALA PRO ASN SER TYR ASN SEQRES 7 E 181 VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL ASP SEQRES 8 E 181 THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL PHE SEQRES 9 E 181 ASN SER LYS ASP TYR ASP LYS THR SER GLN THR VAL ALA SEQRES 10 E 181 VAL GLU PHE ASP THR PHE TYR ASN THR ALA TRP ASP PRO SEQRES 11 E 181 SER ASN GLY ASP ARG HIS ILE GLY ILE ASP VAL ASN SER SEQRES 12 E 181 ILE LYS SER ILE ASN THR LYS SER TRP LYS LEU GLN ASN SEQRES 13 E 181 GLY LYS GLU ALA ASN VAL VAL ILE ALA PHE ASN GLY ALA SEQRES 14 E 181 THR ASN VAL LEU THR VAL SER LEU THR TYR PRO ASN SEQRES 1 J 2 ASN GLN SEQRES 1 F 53 GLU THR SER TYR THR LEU ASN GLU VAL VAL PRO LEU LYS SEQRES 2 F 53 GLU PHE VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 F 53 THR THR GLY ALA GLU PHE ALA ALA HIS GLU VAL LEU SER SEQRES 4 F 53 TRP TYR PHE ASN SER GLU LEU SER VAL THR SER SER SER SEQRES 5 F 53 ASN MODRES 1LGC ASN H 512 ASN GLYCOSYLATION SITE MODRES 1LGC ASN I 512 ASN GLYCOSYLATION SITE MODRES 1LGC ASN J 512 ASN GLYCOSYLATION SITE HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET MAN G 4 11 HET NAG G 5 14 HET FUC G 6 10 HET GAL G 7 11 HET MAN G 8 11 HET NAG G 9 14 HET FUC G 10 10 HET NAG K 1 14 HET NAG K 2 14 HET BMA K 3 11 HET MAN K 4 11 HET NAG K 5 14 HET GAL K 6 11 HET SIA K 7 20 HET MAN K 8 11 HET FUC K 9 10 HET NAG L 1 14 HET NAG L 2 14 HET BMA L 3 11 HET MAN L 4 11 HET NAG L 5 14 HET GAL L 6 11 HET SIA L 7 20 HET MAN L 8 11 HET FUC L 9 10 HET CA A 301 1 HET MN A 302 1 HET CA C 301 1 HET MN C 302 1 HET CA E 301 1 HET MN E 302 1 HET MPD E 303 8 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 10 NAG 10(C8 H15 N O6) FORMUL 10 BMA 3(C6 H12 O6) FORMUL 10 MAN 6(C6 H12 O6) FORMUL 10 FUC 4(C6 H12 O5) FORMUL 10 GAL 3(C6 H12 O6) FORMUL 11 SIA 2(C11 H19 N O9) FORMUL 13 CA 3(CA 2+) FORMUL 14 MN 3(MN 2+) FORMUL 19 MPD C6 H14 O2 FORMUL 20 HOH *279(H2 O) HELIX 1 1 GLY A 97 LEU A 101 5 5 HELIX 2 2 ASP A 110 GLN A 114 5 5 HELIX 3 7 PRO D 11 VAL D 16 1 6 SHEET 1 A1 8 GLU A 2 THR A 9 0 SHEET 2 A1 8 PHE B 32 SER B 47 -1 SHEET 3 A1 8 ALA A 61 ALA A 73 -1 SHEET 4 A1 8 LYS A 158 ASN A 167 -1 SHEET 5 A1 8 VAL A 172 TYR A 179 -1 SHEET 6 A1 8 THR B 2 VAL B 10 -1 SHEET 7 A1 8 TYR A 25 THR A 27 -1 SHEET 8 A1 8 ARG A 30 LYS A 35 -1 SHEET 1 B1 7 LEU A 18 GLY A 22 0 SHEET 2 B1 7 THR A 40 TYR A 46 -1 SHEET 3 B1 7 TRP B 19 THR B 28 -1 SHEET 4 B1 7 GLY A 82 PRO A 89 -1 SHEET 5 B1 7 THR A 115 ASP A 121 -1 SHEET 6 B1 7 ARG A 135 VAL A 141 -1 SHEET 7 B1 7 ASN A 148 SER A 151 -1 SHEET 1 A2 8 GLU C 2 THR C 9 0 SHEET 2 A2 8 PHE D 32 SER D 47 -1 SHEET 3 A2 8 ALA C 61 ALA C 73 -1 SHEET 4 A2 8 LYS C 158 ASN C 167 -1 SHEET 5 A2 8 VAL C 172 TYR C 179 -1 SHEET 6 A2 8 THR D 2 VAL D 10 -1 SHEET 7 A2 8 TYR C 25 THR C 27 -1 SHEET 8 A2 8 ARG C 30 LYS C 35 -1 SHEET 1 B2 7 LEU C 18 GLY C 22 0 SHEET 2 B2 7 THR C 40 TYR C 46 -1 SHEET 3 B2 7 TRP D 19 THR D 28 -1 SHEET 4 B2 7 GLY C 82 PRO C 89 -1 SHEET 5 B2 7 THR C 115 ASP C 121 -1 SHEET 6 B2 7 ARG C 135 VAL C 141 -1 SHEET 7 B2 7 ASN C 148 SER C 151 -1 SHEET 1 A3 8 GLU E 2 THR E 9 0 SHEET 2 A3 8 PHE F 32 SER F 47 -1 SHEET 3 A3 8 ALA E 61 ALA E 73 -1 SHEET 4 A3 8 LYS E 158 ASN E 167 -1 SHEET 5 A3 8 VAL E 172 TYR E 179 -1 SHEET 6 A3 8 THR F 2 VAL F 10 -1 SHEET 7 A3 8 TYR E 25 THR E 27 -1 SHEET 8 A3 8 ARG E 30 LYS E 35 -1 SHEET 1 B3 7 LEU E 18 GLY E 22 0 SHEET 2 B3 7 THR E 40 TYR E 46 -1 SHEET 3 B3 7 TRP F 19 THR F 28 -1 SHEET 4 B3 7 GLY E 82 PRO E 89 -1 SHEET 5 B3 7 THR E 115 ASP E 121 -1 SHEET 6 B3 7 ARG E 135 VAL E 141 -1 SHEET 7 B3 7 ASN E 148 SER E 151 -1 LINK ND2 ASN H 512 C1 NAG G 1 1555 1555 1.46 LINK ND2 ASN I 512 C1 NAG K 1 1555 1555 1.45 LINK ND2 ASN J 512 C1 NAG L 1 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.39 LINK O6 NAG G 1 C1 FUC G 10 1555 1555 1.41 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.39 LINK O3 BMA G 3 C1 MAN G 4 1555 1555 1.40 LINK O6 BMA G 3 C1 MAN G 8 1555 1555 1.40 LINK O2 MAN G 4 C1 NAG G 5 1555 1555 1.39 LINK O3 NAG G 5 C1 FUC G 6 1555 1555 1.42 LINK O4 NAG G 5 C1 GAL G 7 1555 1555 1.41 LINK O2 MAN G 8 C1 NAG G 9 1555 1555 1.39 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.40 LINK O6 NAG K 1 C1 FUC K 9 1555 1555 1.40 LINK O4 NAG K 2 C1 BMA K 3 1555 1555 1.40 LINK O3 BMA K 3 C1 MAN K 4 1555 1555 1.41 LINK O6 BMA K 3 C1 MAN K 8 1555 1555 1.40 LINK O2 MAN K 4 C1 NAG K 5 1555 1555 1.38 LINK O4 NAG K 5 C1 GAL K 6 1555 1555 1.39 LINK O6 GAL K 6 C2 SIA K 7 1555 1555 1.40 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.40 LINK O6 NAG L 1 C1 FUC L 9 1555 1555 1.40 LINK O4 NAG L 2 C1 BMA L 3 1555 1555 1.40 LINK O3 BMA L 3 C1 MAN L 4 1555 1555 1.41 LINK O6 BMA L 3 C1 MAN L 8 1555 1555 1.41 LINK O2 MAN L 4 C1 NAG L 5 1555 1555 1.39 LINK O4 NAG L 5 C1 GAL L 6 1555 1555 1.39 LINK O6 GAL L 6 C2 SIA L 7 1555 1555 1.39 LINK OD1 ASP A 81 CA CA A 301 1555 1555 2.88 LINK OD2 ASP A 81 CA CA A 301 1555 1555 3.30 LINK OE2 GLU A 119 MN MN A 302 1555 1555 2.23 LINK OD2 ASP A 121 CA CA A 301 1555 1555 2.53 LINK OD1 ASP A 121 CA CA A 301 1555 1555 2.33 LINK O PHE A 123 CA CA A 301 1555 1555 2.02 LINK OD1 ASN A 125 CA CA A 301 1555 1555 1.96 LINK OD2 ASP A 129 CA CA A 301 1555 1555 3.11 LINK OD1 ASP A 129 MN MN A 302 1555 1555 2.51 LINK CA CA A 301 O HOH A 374 1555 1555 2.12 LINK OD1 ASP C 121 CA CA C 301 1555 1555 2.34 LINK OD2 ASP C 121 CA CA C 301 1555 1555 2.61 LINK O PHE C 123 CA CA C 301 1555 1555 2.46 LINK OD1 ASN C 125 CA CA C 301 1555 1555 1.94 LINK OD1 ASP C 129 MN MN C 302 1555 1555 2.40 LINK OD1 ASP E 81 CA CA E 301 1555 1555 2.77 LINK OE2 GLU E 119 MN MN E 302 1555 1555 2.27 LINK OD2 ASP E 121 CA CA E 301 1555 1555 2.53 LINK OD1 ASP E 121 CA CA E 301 1555 1555 2.47 LINK OD2 ASP E 121 MN MN E 302 1555 1555 2.75 LINK O PHE E 123 CA CA E 301 1555 1555 2.08 LINK OD1 ASN E 125 CA CA E 301 1555 1555 1.97 LINK OD1 ASP E 129 MN MN E 302 1555 1555 2.50 LINK MN MN E 302 O HOH E 324 1555 1555 2.05 CISPEP 1 ALA A 80 ASP A 81 0 -0.99 CISPEP 2 ALA C 80 ASP C 81 0 1.25 CISPEP 3 ALA E 80 ASP E 81 0 0.80 SITE 1 A1 6 GLY A 99 ASP A 81 ASN A 125 GLY B 29 SITE 2 A1 6 ALA B 30 GLU B 31 SITE 1 B1 2 PHE B 32 GLU B 31 SITE 1 A2 6 GLY C 99 ASP C 81 ASN C 125 GLY D 29 SITE 2 A2 6 ALA D 30 GLU D 31 SITE 1 B2 2 PHE D 32 GLU D 31 SITE 1 A3 6 GLY E 99 ASP E 81 ASN E 125 GLY F 29 SITE 2 A3 6 ALA F 30 GLU F 31 SITE 1 B3 2 PHE F 32 GLU F 31 CRYST1 117.000 117.000 120.100 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008326 0.00000