HEADER HYDROLASE 17-APR-02 1LI4 TITLE HUMAN S-ADENOSYLHOMOCYSTEINE HYDROLASE COMPLEXED WITH NEPLANOCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLHOMOCYSTEINE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PPROKCD20 KEYWDS ALPHA-BETA STRUCTURE, INHIBITOR COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.YANG,Y.HU,D.H.YIN,M.A.TURNER,M.WANG,R.T.BORCHARDT,P.L.HOWELL, AUTHOR 2 K.KUCZERA,R.L.SCHOWEN REVDAT 4 16-AUG-23 1LI4 1 REMARK REVDAT 3 13-JUL-11 1LI4 1 VERSN REVDAT 2 24-FEB-09 1LI4 1 VERSN REVDAT 1 20-MAY-03 1LI4 0 JRNL AUTH X.YANG,Y.HU,D.H.YIN,M.A.TURNER,M.WANG,R.T.BORCHARDT, JRNL AUTH 2 P.L.HOWELL,K.KUCZERA,R.L.SCHOWEN JRNL TITL CATALYTIC STRATEGY OF S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE: JRNL TITL 2 TRANSITION-STATE STABILIZATION AND THE AVOIDANCE OF ABORTIVE JRNL TITL 3 REACTIONS JRNL REF BIOCHEMISTRY V. 42 1900 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12590576 JRNL DOI 10.1021/BI0262350 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 814101.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 34435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3434 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4372 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 491 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.44000 REMARK 3 B22 (A**2) : -5.68000 REMARK 3 B33 (A**2) : 1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.230 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 62.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NOV19NAHNEP.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NOV19NAHNEP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : COLLIMATING MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35337 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ID 1A7A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4K, IOSPROPANOL, AMMONIUM ACETATE, REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.83500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.83500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.83500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.83500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.83500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.83500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 67.83500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 46.41500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 67.83500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A TETRAMER WHICH CAN BE GENERATED USING REMARK 300 THE CRYSTALLOGRAPHIC SYMMETRY OPERATORS: -X, -Y, Z; -X, Y, -Z; X, - REMARK 300 Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 30420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 92.83000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 92.83000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 171.49000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 171.49000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 7 171.47 173.92 REMARK 500 ASP A 11 104.31 -166.00 REMARK 500 MET A 29 63.94 -119.26 REMARK 500 LYS A 43 55.16 38.91 REMARK 500 HIS A 55 116.93 -15.93 REMARK 500 ALA A 95 1.06 -67.02 REMARK 500 ASP A 122 52.78 -99.75 REMARK 500 LYS A 186 -70.66 -109.94 REMARK 500 PHE A 189 -61.52 -126.99 REMARK 500 LEU A 192 -73.83 -83.96 REMARK 500 ASP A 208 18.45 57.13 REMARK 500 ALA A 350 -148.58 -143.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 100 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NOC A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 901 DBREF 1LI4 A 1 432 UNP P23526 SAHH_HUMAN 1 432 SEQRES 1 A 432 MET SER ASP LYS LEU PRO TYR LYS VAL ALA ASP ILE GLY SEQRES 2 A 432 LEU ALA ALA TRP GLY ARG LYS ALA LEU ASP ILE ALA GLU SEQRES 3 A 432 ASN GLU MET PRO GLY LEU MET ARG MET ARG GLU ARG TYR SEQRES 4 A 432 SER ALA SER LYS PRO LEU LYS GLY ALA ARG ILE ALA GLY SEQRES 5 A 432 CYS LEU HIS MET THR VAL GLU THR ALA VAL LEU ILE GLU SEQRES 6 A 432 THR LEU VAL THR LEU GLY ALA GLU VAL GLN TRP SER SER SEQRES 7 A 432 CYS ASN ILE PHE SER THR GLN ASP HIS ALA ALA ALA ALA SEQRES 8 A 432 ILE ALA LYS ALA GLY ILE PRO VAL TYR ALA TRP LYS GLY SEQRES 9 A 432 GLU THR ASP GLU GLU TYR LEU TRP CYS ILE GLU GLN THR SEQRES 10 A 432 LEU TYR PHE LYS ASP GLY PRO LEU ASN MET ILE LEU ASP SEQRES 11 A 432 ASP GLY GLY ASP LEU THR ASN LEU ILE HIS THR LYS TYR SEQRES 12 A 432 PRO GLN LEU LEU PRO GLY ILE ARG GLY ILE SER GLU GLU SEQRES 13 A 432 THR THR THR GLY VAL HIS ASN LEU TYR LYS MET MET ALA SEQRES 14 A 432 ASN GLY ILE LEU LYS VAL PRO ALA ILE ASN VAL ASN ASP SEQRES 15 A 432 SER VAL THR LYS SER LYS PHE ASP ASN LEU TYR GLY CYS SEQRES 16 A 432 ARG GLU SER LEU ILE ASP GLY ILE LYS ARG ALA THR ASP SEQRES 17 A 432 VAL MET ILE ALA GLY LYS VAL ALA VAL VAL ALA GLY TYR SEQRES 18 A 432 GLY ASP VAL GLY LYS GLY CYS ALA GLN ALA LEU ARG GLY SEQRES 19 A 432 PHE GLY ALA ARG VAL ILE ILE THR GLU ILE ASP PRO ILE SEQRES 20 A 432 ASN ALA LEU GLN ALA ALA MET GLU GLY TYR GLU VAL THR SEQRES 21 A 432 THR MET ASP GLU ALA CYS GLN GLU GLY ASN ILE PHE VAL SEQRES 22 A 432 THR THR THR GLY CYS ILE ASP ILE ILE LEU GLY ARG HIS SEQRES 23 A 432 PHE GLU GLN MET LYS ASP ASP ALA ILE VAL CYS ASN ILE SEQRES 24 A 432 GLY HIS PHE ASP VAL GLU ILE ASP VAL LYS TRP LEU ASN SEQRES 25 A 432 GLU ASN ALA VAL GLU LYS VAL ASN ILE LYS PRO GLN VAL SEQRES 26 A 432 ASP ARG TYR ARG LEU LYS ASN GLY ARG ARG ILE ILE LEU SEQRES 27 A 432 LEU ALA GLU GLY ARG LEU VAL ASN LEU GLY CYS ALA MET SEQRES 28 A 432 GLY HIS PRO SER PHE VAL MET SER ASN SER PHE THR ASN SEQRES 29 A 432 GLN VAL MET ALA GLN ILE GLU LEU TRP THR HIS PRO ASP SEQRES 30 A 432 LYS TYR PRO VAL GLY VAL HIS PHE LEU PRO LYS LYS LEU SEQRES 31 A 432 ASP GLU ALA VAL ALA GLU ALA HIS LEU GLY LYS LEU ASN SEQRES 32 A 432 VAL LYS LEU THR LYS LEU THR GLU LYS GLN ALA GLN TYR SEQRES 33 A 432 LEU GLY MET SER CYS ASP GLY PRO PHE LYS PRO ASP HIS SEQRES 34 A 432 TYR ARG TYR HET NAD A 433 44 HET NOC A 434 19 HET IPA A 900 4 HET IPA A 901 4 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM NOC 3-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-CYCLOPENTANE-1, HETNAM 2 NOC 2-DIOL HETNAM IPA ISOPROPYL ALCOHOL HETSYN NOC NEPLANOCIN HETSYN IPA 2-PROPANOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 NOC C11 H15 N5 O3 FORMUL 4 IPA 2(C3 H8 O) FORMUL 6 HOH *213(H2 O) HELIX 1 1 ASP A 11 GLY A 13 5 3 HELIX 2 2 LEU A 14 ASN A 27 1 14 HELIX 3 3 MET A 29 SER A 40 1 12 HELIX 4 4 THR A 57 LEU A 70 1 14 HELIX 5 5 GLN A 85 ALA A 95 1 11 HELIX 6 6 THR A 106 GLN A 116 1 11 HELIX 7 7 GLY A 133 TYR A 143 1 11 HELIX 8 8 PRO A 144 ILE A 150 5 7 HELIX 9 9 THR A 157 ASN A 170 1 14 HELIX 10 10 SER A 183 LYS A 188 1 6 HELIX 11 11 PHE A 189 ASP A 208 1 20 HELIX 12 12 GLY A 222 PHE A 235 1 14 HELIX 13 13 ASP A 245 GLU A 255 1 11 HELIX 14 14 THR A 261 CYS A 266 1 6 HELIX 15 15 LEU A 283 GLU A 288 1 6 HELIX 16 16 ASP A 307 ALA A 315 1 9 HELIX 17 17 GLU A 341 ARG A 343 5 3 HELIX 18 18 LEU A 344 CYS A 349 1 6 HELIX 19 19 PRO A 354 HIS A 375 1 22 HELIX 20 20 PRO A 376 TYR A 379 5 4 HELIX 21 21 PRO A 387 GLY A 400 1 14 HELIX 22 22 THR A 410 GLY A 418 1 9 SHEET 1 A 8 LYS A 8 VAL A 9 0 SHEET 2 A 8 VAL A 99 ALA A 101 1 O VAL A 99 N LYS A 8 SHEET 3 A 8 GLU A 73 SER A 77 1 N TRP A 76 O TYR A 100 SHEET 4 A 8 ARG A 49 CYS A 53 1 N GLY A 52 O GLN A 75 SHEET 5 A 8 MET A 127 ASP A 130 1 O MET A 127 N ALA A 51 SHEET 6 A 8 GLY A 152 GLU A 155 1 O SER A 154 N ASP A 130 SHEET 7 A 8 PRO A 176 ASN A 179 1 O ILE A 178 N ILE A 153 SHEET 8 A 8 GLY A 382 HIS A 384 1 O HIS A 384 N ALA A 177 SHEET 1 B 2 TYR A 119 PHE A 120 0 SHEET 2 B 2 GLY A 123 PRO A 124 -1 O GLY A 123 N PHE A 120 SHEET 1 C 8 GLU A 258 VAL A 259 0 SHEET 2 C 8 ARG A 238 THR A 242 1 N ILE A 241 O GLU A 258 SHEET 3 C 8 VAL A 215 ALA A 219 1 N ALA A 216 O ILE A 240 SHEET 4 C 8 ILE A 271 THR A 274 1 O ILE A 271 N VAL A 217 SHEET 5 C 8 ALA A 294 ASN A 298 1 O ILE A 295 N PHE A 272 SHEET 6 C 8 ARG A 335 LEU A 339 1 O ILE A 337 N VAL A 296 SHEET 7 C 8 VAL A 325 ARG A 329 -1 N ASP A 326 O LEU A 338 SHEET 8 C 8 GLU A 317 LYS A 322 -1 N VAL A 319 O ARG A 327 CISPEP 1 GLY A 423 PRO A 424 0 -2.20 SITE 1 AC1 32 THR A 157 THR A 158 THR A 159 ASP A 190 SITE 2 AC1 32 ASN A 191 GLY A 220 GLY A 222 ASP A 223 SITE 3 AC1 32 VAL A 224 THR A 242 GLU A 243 ILE A 244 SITE 4 AC1 32 ASP A 245 ASN A 248 THR A 275 THR A 276 SITE 5 AC1 32 CYS A 278 ILE A 281 ILE A 299 GLY A 300 SITE 6 AC1 32 HIS A 301 LEU A 344 ASN A 346 HIS A 353 SITE 7 AC1 32 LYS A 426 TYR A 430 NOC A 434 HOH A 903 SITE 8 AC1 32 HOH A 929 HOH A 930 HOH A 938 HOH A 998 SITE 1 AC2 16 HIS A 55 THR A 57 GLU A 59 THR A 60 SITE 2 AC2 16 ASP A 131 GLU A 156 THR A 157 LYS A 186 SITE 3 AC2 16 ASP A 190 HIS A 301 MET A 351 GLY A 352 SITE 4 AC2 16 HIS A 353 MET A 358 PHE A 362 NAD A 433 SITE 1 AC3 6 ARG A 238 ALA A 253 TYR A 257 VAL A 259 SITE 2 AC3 6 LEU A 402 HOH A1039 SITE 1 AC4 3 GLN A 85 ASP A 86 HIS A 87 CRYST1 92.830 135.670 171.490 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005831 0.00000 CONECT 3324 3325 3326 3327 3346 CONECT 3325 3324 CONECT 3326 3324 CONECT 3327 3324 3328 CONECT 3328 3327 3329 CONECT 3329 3328 3330 3331 CONECT 3330 3329 3335 CONECT 3331 3329 3332 3333 CONECT 3332 3331 CONECT 3333 3331 3334 3335 CONECT 3334 3333 CONECT 3335 3330 3333 3336 CONECT 3336 3335 3337 3345 CONECT 3337 3336 3338 CONECT 3338 3337 3339 CONECT 3339 3338 3340 3345 CONECT 3340 3339 3341 3342 CONECT 3341 3340 CONECT 3342 3340 3343 CONECT 3343 3342 3344 CONECT 3344 3343 3345 CONECT 3345 3336 3339 3344 CONECT 3346 3324 3347 CONECT 3347 3346 3348 3349 3350 CONECT 3348 3347 CONECT 3349 3347 CONECT 3350 3347 3351 CONECT 3351 3350 3352 CONECT 3352 3351 3353 3354 CONECT 3353 3352 3358 CONECT 3354 3352 3355 3356 CONECT 3355 3354 CONECT 3356 3354 3357 3358 CONECT 3357 3356 CONECT 3358 3353 3356 3359 CONECT 3359 3358 3360 3367 CONECT 3360 3359 3361 CONECT 3361 3360 3362 3365 CONECT 3362 3361 3363 3364 CONECT 3363 3362 CONECT 3364 3362 CONECT 3365 3361 3366 CONECT 3366 3365 3367 CONECT 3367 3359 3366 CONECT 3368 3369 3371 CONECT 3369 3368 CONECT 3370 3371 3376 CONECT 3371 3368 3370 3372 CONECT 3372 3371 3373 3374 CONECT 3373 3372 CONECT 3374 3372 3375 3376 CONECT 3375 3374 CONECT 3376 3370 3374 3377 CONECT 3377 3376 3378 3386 CONECT 3378 3377 3379 CONECT 3379 3378 3380 CONECT 3380 3379 3381 3386 CONECT 3381 3380 3382 3383 CONECT 3382 3381 CONECT 3383 3381 3384 CONECT 3384 3383 3385 CONECT 3385 3384 3386 CONECT 3386 3377 3380 3385 CONECT 3387 3388 CONECT 3388 3387 3389 3390 CONECT 3389 3388 CONECT 3390 3388 CONECT 3391 3392 CONECT 3392 3391 3393 3394 CONECT 3393 3392 CONECT 3394 3392 MASTER 358 0 4 22 18 0 15 6 3606 1 71 34 END