HEADER PROTEIN BINDING 18-APR-02 1LIQ TITLE NON-NATIVE SOLUTION STRUCTURE OF A FRAGMENT OF THE CH1 DOMAIN OF CBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS ZINC FINGER, PROTEIN DESIGN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.K.SHARPE,J.M.MATTHEWS,A.H.Y.KWAN,A.NEWTON,D.A.GELL,M.CROSSLEY, AUTHOR 2 J.P.MACKAY REVDAT 3 23-FEB-22 1LIQ 1 REMARK LINK REVDAT 2 24-FEB-09 1LIQ 1 VERSN REVDAT 1 29-MAY-02 1LIQ 0 JRNL AUTH B.K.SHARPE,J.M.MATTHEWS,A.H.Y.KWAN,A.NEWTON,D.A.GELL, JRNL AUTH 2 M.CROSSLEY,J.P.MACKAY JRNL TITL A NEW ZINC BINDING FOLD UNDERLINES THE VERSATILITY OF ZINC JRNL TITL 2 BINDING MODULES IN PROTEIN EVOLUTION JRNL REF STRUCTURE V. 10 639 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12015147 JRNL DOI 10.1016/S0969-2126(02)00757-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, CNS 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON 275 UMAMBIGUOUS NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 31 SETS OF AMBIGUOUS NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS AND 110 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 1LIQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015972. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM CBP(376-402), 0.6MM TCEP, REMARK 210 0.6MM ZNSO4, 95% H2O, 10% D2O; REMARK 210 0.4MM CBP(376-402), 0.6MM TCEP, REMARK 210 0.6MM ZNSO4, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 2D NOESY; E REMARK 210 -COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, DYANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 12 -81.14 -134.31 REMARK 500 1 LYS A 14 22.24 80.44 REMARK 500 1 ASN A 15 76.29 -65.19 REMARK 500 1 ALA A 25 36.65 -174.81 REMARK 500 2 THR A 12 -94.23 -145.20 REMARK 500 2 ASN A 15 76.00 -68.70 REMARK 500 2 ALA A 25 76.53 84.32 REMARK 500 3 THR A 12 -81.21 -133.30 REMARK 500 3 LYS A 14 21.66 80.33 REMARK 500 3 ASN A 15 76.10 -66.04 REMARK 500 3 GLN A 24 134.29 -171.75 REMARK 500 3 ALA A 25 37.53 -167.32 REMARK 500 4 THR A 12 -80.46 -133.60 REMARK 500 4 LYS A 14 22.37 80.13 REMARK 500 4 ASN A 15 76.21 -66.45 REMARK 500 4 CYS A 23 67.76 -114.73 REMARK 500 4 ALA A 25 144.57 -176.09 REMARK 500 5 THR A 12 -81.99 -133.47 REMARK 500 5 ASN A 15 75.53 -67.16 REMARK 500 5 ALA A 25 134.31 84.30 REMARK 500 6 THR A 12 -94.71 -142.22 REMARK 500 6 ASN A 15 75.45 -68.17 REMARK 500 6 ALA A 25 98.26 84.27 REMARK 500 7 THR A 12 -81.07 -126.38 REMARK 500 7 LYS A 14 22.39 81.73 REMARK 500 7 ASN A 15 75.71 -65.96 REMARK 500 7 ALA A 25 77.83 -176.63 REMARK 500 8 THR A 12 -80.93 -131.98 REMARK 500 8 LYS A 14 20.33 81.13 REMARK 500 8 ASN A 15 75.45 -66.84 REMARK 500 8 HIS A 22 -19.46 -142.91 REMARK 500 8 ALA A 25 119.26 -173.98 REMARK 500 9 THR A 12 -81.94 -131.83 REMARK 500 9 LYS A 14 21.25 81.20 REMARK 500 9 ASN A 15 75.63 -66.63 REMARK 500 9 ALA A 25 35.72 84.34 REMARK 500 10 THR A 12 -94.56 -142.76 REMARK 500 10 ASN A 15 75.50 -68.21 REMARK 500 10 GLN A 24 -169.60 46.25 REMARK 500 10 ALA A 25 76.75 84.29 REMARK 500 11 PRO A 8 44.91 -86.78 REMARK 500 11 HIS A 9 -46.84 -139.56 REMARK 500 11 ARG A 11 84.90 -68.15 REMARK 500 11 THR A 12 -83.09 -131.94 REMARK 500 11 ASN A 15 74.99 -67.41 REMARK 500 11 ALA A 25 85.57 84.30 REMARK 500 12 PRO A 8 44.92 -86.83 REMARK 500 12 HIS A 9 -46.99 -139.72 REMARK 500 12 THR A 12 -81.46 -131.22 REMARK 500 12 LYS A 14 21.33 81.35 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 28 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 CYS A 10 SG 104.4 REMARK 620 3 HIS A 19 ND1 109.7 114.3 REMARK 620 4 CYS A 23 SG 104.8 122.0 101.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 28 DBREF 1LIQ A 1 27 UNP Q92793 CBP_HUMAN 376 402 SEQRES 1 A 27 GLU VAL ARG ALA CYS SER LEU PRO HIS CYS ARG THR MET SEQRES 2 A 27 LYS ASN VAL LEU ASN HIS MET THR HIS CYS GLN ALA GLY SEQRES 3 A 27 LYS HET ZN A 28 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLU A 1 CYS A 5 5 5 HELIX 2 2 ASN A 15 THR A 21 1 7 LINK SG CYS A 5 ZN ZN A 28 1555 1555 2.28 LINK SG CYS A 10 ZN ZN A 28 1555 1555 2.29 LINK ND1 HIS A 19 ZN ZN A 28 1555 1555 2.00 LINK SG CYS A 23 ZN ZN A 28 1555 1555 2.31 SITE 1 AC1 6 CYS A 5 LEU A 7 CYS A 10 HIS A 19 SITE 2 AC1 6 HIS A 22 CYS A 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1