HEADER HYDROLASE 20-JAN-98 1LKR TITLE MONOCLINIC HEN EGG WHITE LYSOZYME IODIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MURAMIDASE; COMPND 5 EC: 3.2.1.17; COMPND 6 OTHER_DETAILS: 17 IODIDE SITES FOUND ON TWO LYSOZYME COMPND 7 MOLECULES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 OTHER_DETAILS: WORTHINGTON BIOCHEMICALS, USED WITHOUT SOURCE 6 PURIFICATION KEYWDS HYDROLASE, GLYCOSIDASE, LYSOZYME EXPDTA X-RAY DIFFRACTION AUTHOR L.K.STEINRAUF REVDAT 5 16-JUN-09 1LKR 1 REMARK REVDAT 4 24-FEB-09 1LKR 1 VERSN REVDAT 3 01-APR-03 1LKR 1 JRNL REVDAT 2 06-APR-99 1LKR 1 JRNL TITLE REVDAT 1 29-APR-98 1LKR 0 JRNL AUTH L.K.STEINRAUF JRNL TITL STRUCTURES OF MONOCLINIC LYSOZYME IODIDE AT 1.6 A JRNL TITL 2 AND OF TRICLINIC LYSOZYME NITRATE AT 1.1 A. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 54 767 1998 JRNL REFN ISSN 0907-4449 JRNL PMID 9757091 JRNL DOI 10.1107/S0907444997016922 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.T.RAO,M.SUNDARALINGAM REMARK 1 TITL STUDIES OF MONOCLINIC HEN EGG-WHITE LYSOZYME. IV. REMARK 1 TITL 2 X-RAY REFINEMENT AT 1.8 A RESOLUTION AND A REMARK 1 TITL 3 COMPARISON OF THE VARIABLE REGIONS IN THE REMARK 1 TITL 4 POLYMORPHIC FORMS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 52 170 1996 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.T.RAO,J.HOGLE,M.SUNDARALINGAM REMARK 1 TITL STUDIES OF MONOCLINIC HEN EGG WHITE LYSOZYME. II. REMARK 1 TITL 2 THE REFINEMENT AT 2.5 A RESOLUTION--CONFORMATIONAL REMARK 1 TITL 3 VARIABILITY BETWEEN THE TWO INDEPENDENT MOLECULES REMARK 1 REF ACTA CRYSTALLOGR.,SECT.C V. 39 237 1983 REMARK 1 REFN ISSN 0108-2701 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.K.STEINRAUF REMARK 1 TITL PRELIMINARY X-RAY DATA FOR SOME NEW CRYSTALLINE REMARK 1 TITL 2 FORMS OF BETA-LACTOGLOBULIN AND HEN EGG-WHITE REMARK 1 TITL 3 LYSOZYME REMARK 1 REF ACTA CRYSTALLOGR. V. 12 77 1959 REMARK 1 REFN ISSN 0365-110X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 63.0 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4369 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 REFINEMENT WAS INITIATED BY PROLSQ, WHICH DID NOT ALLOW REMARK 3 ANISOTROPY. THE FINAL REFINEMENT WAS CARRIED OUT USING SHELX-L93 REMARK 3 WITH ALL ATOMS ANISOTROPIC. REMARK 3 REMARK 3 THE PRESENCE OF THE 17 IODIDE ATOMS MAKES THE APPLICATION REMARK 3 OF THE USUAL ANALYSIS OF ERRORS NOT VALID. ONLY WHEN REMARK 3 ANOTHER MONOCLINIC LYSOZYME STRUCTURE WITHOUT HEAVY ATOMS REMARK 3 HAS BEEN REFINED BY THE SAME PROCEDURE WILL AN ANALYSIS REMARK 3 BE POSSIBLE. NEVERTHELESS, A COMPARISON OF THE BOND REMARK 3 LENGTHS BETWEEN THE TWO MOLECULES OF LYSOZYME GIVES AN REMARK 3 AVERAGE ERROR OF 0.12 ANGSTROMS, WHICH IS IN GOOD AGREEMENT REMARK 3 WITH THE LUZATTI ANALYSIS. REMARK 4 REMARK 4 1LKR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : SEP-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : BENT CYLINDRICAL GE(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : MCS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 63.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07610 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: MONOCLINIC LYSOZYME NITRATE (SUNDARALINGAM) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 26.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% PROTEIN, 200 MMOLAR ACETATE REMARK 280 BUFFER, PH 8, 5% SODIUM IODIDE, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.57650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 59 NH1 ARG B 61 0.88 REMARK 500 CG ASN B 59 NH1 ARG B 61 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 1 N LYS A 1 CA 0.126 REMARK 500 LYS A 1 CA LYS A 1 CB -0.144 REMARK 500 LYS A 1 CB LYS A 1 CG -0.164 REMARK 500 VAL A 2 N VAL A 2 CA 0.174 REMARK 500 VAL A 2 CA VAL A 2 CB -0.335 REMARK 500 VAL A 2 CA VAL A 2 C 0.294 REMARK 500 VAL A 2 C VAL A 2 O 0.124 REMARK 500 PHE A 3 N PHE A 3 CA -0.150 REMARK 500 PHE A 3 CB PHE A 3 CG -0.122 REMARK 500 PHE A 3 CG PHE A 3 CD2 -0.184 REMARK 500 PHE A 3 CG PHE A 3 CD1 -0.099 REMARK 500 VAL A 2 C PHE A 3 N -0.178 REMARK 500 GLY A 4 N GLY A 4 CA 0.153 REMARK 500 ARG A 5 NE ARG A 5 CZ -0.083 REMARK 500 ARG A 5 CZ ARG A 5 NH2 0.254 REMARK 500 GLY A 4 C ARG A 5 N -0.177 REMARK 500 ARG A 5 C CYS A 6 N -0.171 REMARK 500 GLU A 7 CG GLU A 7 CD -0.249 REMARK 500 GLU A 7 CD GLU A 7 OE1 0.120 REMARK 500 GLU A 7 C GLU A 7 O 0.124 REMARK 500 LYS A 13 CA LYS A 13 C -0.254 REMARK 500 ARG A 14 CA ARG A 14 CB 0.133 REMARK 500 ARG A 14 CG ARG A 14 CD 0.268 REMARK 500 ARG A 14 CD ARG A 14 NE 0.376 REMARK 500 ARG A 14 NE ARG A 14 CZ 0.142 REMARK 500 ARG A 14 CZ ARG A 14 NH1 -0.318 REMARK 500 ARG A 14 CZ ARG A 14 NH2 0.109 REMARK 500 HIS A 15 CB HIS A 15 CG 0.119 REMARK 500 HIS A 15 CG HIS A 15 CD2 -0.143 REMARK 500 HIS A 15 CG HIS A 15 ND1 -0.274 REMARK 500 HIS A 15 CE1 HIS A 15 NE2 -0.179 REMARK 500 GLY A 16 N GLY A 16 CA 0.141 REMARK 500 GLY A 16 CA GLY A 16 C -0.128 REMARK 500 HIS A 15 C GLY A 16 N -0.177 REMARK 500 ASP A 18 N ASP A 18 CA 0.135 REMARK 500 ASN A 19 CB ASN A 19 CG 0.177 REMARK 500 TYR A 20 N TYR A 20 CA 0.143 REMARK 500 TYR A 20 CG TYR A 20 CD1 -0.082 REMARK 500 TYR A 20 CD1 TYR A 20 CE1 -0.115 REMARK 500 TYR A 20 CZ TYR A 20 OH 0.102 REMARK 500 ARG A 21 N ARG A 21 CA 0.226 REMARK 500 ARG A 21 NE ARG A 21 CZ 0.270 REMARK 500 ARG A 21 CZ ARG A 21 NH1 0.162 REMARK 500 ARG A 21 CZ ARG A 21 NH2 -0.160 REMARK 500 GLY A 22 C GLY A 22 O -0.141 REMARK 500 TYR A 23 CG TYR A 23 CD2 -0.103 REMARK 500 TYR A 23 CE2 TYR A 23 CD2 0.104 REMARK 500 TYR A 23 C TYR A 23 O 0.153 REMARK 500 SER A 24 CB SER A 24 OG -0.079 REMARK 500 SER A 24 C SER A 24 O 0.178 REMARK 500 REMARK 500 THIS ENTRY HAS 477 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 1 CA - C - O ANGL. DEV. = 16.6 DEGREES REMARK 500 VAL A 2 CA - C - O ANGL. DEV. = -17.3 DEGREES REMARK 500 LYS A 1 O - C - N ANGL. DEV. = -18.7 DEGREES REMARK 500 PHE A 3 CB - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 PHE A 3 CD1 - CG - CD2 ANGL. DEV. = -13.7 DEGREES REMARK 500 PHE A 3 CB - CG - CD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 PHE A 3 CG - CD1 - CE1 ANGL. DEV. = 12.4 DEGREES REMARK 500 PHE A 3 CG - CD2 - CE2 ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 5 NH1 - CZ - NH2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 8.6 DEGREES REMARK 500 GLU A 7 OE1 - CD - OE2 ANGL. DEV. = -11.3 DEGREES REMARK 500 ALA A 11 N - CA - CB ANGL. DEV. = 8.5 DEGREES REMARK 500 ALA A 11 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 LYS A 13 CD - CE - NZ ANGL. DEV. = 14.8 DEGREES REMARK 500 LYS A 13 CA - C - O ANGL. DEV. = 19.4 DEGREES REMARK 500 MET A 12 O - C - N ANGL. DEV. = 17.5 DEGREES REMARK 500 LYS A 13 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG A 14 CG - CD - NE ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG A 14 CD - NE - CZ ANGL. DEV. = -34.6 DEGREES REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 21.3 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -25.6 DEGREES REMARK 500 LYS A 13 O - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 HIS A 15 CB - CG - CD2 ANGL. DEV. = -17.8 DEGREES REMARK 500 HIS A 15 ND1 - CG - CD2 ANGL. DEV. = 17.0 DEGREES REMARK 500 HIS A 15 ND1 - CE1 - NE2 ANGL. DEV. = -13.0 DEGREES REMARK 500 HIS A 15 CE1 - NE2 - CD2 ANGL. DEV. = 14.3 DEGREES REMARK 500 HIS A 15 CG - CD2 - NE2 ANGL. DEV. = -16.4 DEGREES REMARK 500 HIS A 15 CA - C - O ANGL. DEV. = -20.6 DEGREES REMARK 500 HIS A 15 O - C - N ANGL. DEV. = 22.7 DEGREES REMARK 500 ASP A 18 CA - CB - CG ANGL. DEV. = -18.7 DEGREES REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = 23.1 DEGREES REMARK 500 ASP A 18 CB - CG - OD2 ANGL. DEV. = -14.9 DEGREES REMARK 500 ASN A 19 CA - CB - CG ANGL. DEV. = -14.9 DEGREES REMARK 500 TYR A 20 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 20 CG - CD1 - CE1 ANGL. DEV. = -10.1 DEGREES REMARK 500 TYR A 20 CD1 - CE1 - CZ ANGL. DEV. = 7.8 DEGREES REMARK 500 TYR A 20 CZ - CE2 - CD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 21 CB - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG A 21 CB - CG - CD ANGL. DEV. = 21.4 DEGREES REMARK 500 ARG A 21 CD - NE - CZ ANGL. DEV. = -36.2 DEGREES REMARK 500 ARG A 21 NH1 - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 21 CA - C - O ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 21 CA - C - N ANGL. DEV. = 18.1 DEGREES REMARK 500 TYR A 23 CB - CG - CD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 TYR A 23 CD1 - CG - CD2 ANGL. DEV. = 15.3 DEGREES REMARK 500 TYR A 23 CG - CD1 - CE1 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 23 CG - CD2 - CE2 ANGL. DEV. = -10.5 DEGREES REMARK 500 SER A 24 N - CA - CB ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 564 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 18 109.89 -57.96 REMARK 500 THR B 69 66.83 -162.97 REMARK 500 ARG B 73 -121.82 47.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 14 0.14 SIDE_CHAIN REMARK 500 ARG B 21 0.18 SIDE_CHAIN REMARK 500 ARG B 61 0.13 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 47 56.7 L L OUTSIDE RANGE REMARK 500 SER A 60 24.7 L L OUTSIDE RANGE REMARK 500 ARG A 68 24.6 L L OUTSIDE RANGE REMARK 500 ILE A 78 46.0 L L OUTSIDE RANGE REMARK 500 CYS A 80 24.1 L L OUTSIDE RANGE REMARK 500 SER A 86 50.1 L L OUTSIDE RANGE REMARK 500 MET A 105 21.8 L L OUTSIDE RANGE REMARK 500 THR A 118 22.5 L L OUTSIDE RANGE REMARK 500 VAL A 120 21.2 L L OUTSIDE RANGE REMARK 500 LEU A 129 54.8 L L OUTSIDE RANGE REMARK 500 ASP B 18 24.5 L L OUTSIDE RANGE REMARK 500 ASN B 19 22.4 L L OUTSIDE RANGE REMARK 500 LEU B 25 22.8 L L OUTSIDE RANGE REMARK 500 ALA B 42 24.3 L L OUTSIDE RANGE REMARK 500 ASN B 46 14.7 L L OUTSIDE RANGE REMARK 500 THR B 47 23.5 L L OUTSIDE RANGE REMARK 500 SER B 50 22.1 L L OUTSIDE RANGE REMARK 500 ASN B 59 24.7 L L OUTSIDE RANGE REMARK 500 ARG B 68 55.8 L L OUTSIDE RANGE REMARK 500 LEU B 75 21.0 L L OUTSIDE RANGE REMARK 500 CYS B 76 22.1 L L OUTSIDE RANGE REMARK 500 ILE B 124 23.4 L L OUTSIDE RANGE REMARK 500 LEU B 129 13.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 177 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 181 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A 196 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 237 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH B 265 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH B 281 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A 370 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B 456 DISTANCE = 9.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 131 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 133 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 134 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 135 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 136 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 140 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 142 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 143 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 145 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 146 DBREF 1LKR A 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 1LKR B 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 B 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 B 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 B 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 B 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 B 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 B 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 B 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 B 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 B 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 B 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET IOD A 130 1 HET IOD B 131 1 HET IOD A 132 1 HET IOD A 133 1 HET IOD A 134 1 HET IOD A 135 1 HET IOD B 136 1 HET IOD B 137 1 HET IOD B 138 1 HET IOD B 139 1 HET IOD A 140 1 HET IOD A 141 1 HET IOD A 142 1 HET IOD A 143 1 HET IOD A 144 1 HET IOD A 145 1 HET IOD B 146 1 HETNAM IOD IODIDE ION FORMUL 3 IOD 17(I 1-) FORMUL 20 HOH *311(H2 O) HELIX 1 1 ARG A 5 ARG A 14 1 10 HELIX 2 2 TYR A 20 GLY A 22 5 3 HELIX 3 3 LEU A 25 SER A 36 1 12 HELIX 4 4 CYS A 80 LEU A 84 5 5 HELIX 5 5 THR A 89 SER A 100 1 12 HELIX 6 6 GLY A 104 ALA A 107 5 4 HELIX 7 7 VAL A 109 ARG A 114 1 6 HELIX 8 8 VAL A 120 ILE A 124 5 5 HELIX 9 9 ARG B 5 ARG B 14 1 10 HELIX 10 10 TYR B 20 GLY B 22 5 3 HELIX 11 11 LEU B 25 SER B 36 1 12 HELIX 12 12 SER B 60 TRP B 63 1 4 HELIX 13 13 CYS B 80 LEU B 84 5 5 HELIX 14 14 THR B 89 VAL B 99 1 11 HELIX 15 15 GLY B 104 ALA B 107 5 4 HELIX 16 16 VAL B 109 ARG B 114 1 6 HELIX 17 17 VAL B 120 ILE B 124 5 5 SHEET 1 A 2 THR A 43 ARG A 45 0 SHEET 2 A 2 THR A 51 TYR A 53 -1 N ASP A 52 O ASN A 44 SHEET 1 B 2 THR B 43 ARG B 45 0 SHEET 2 B 2 THR B 51 TYR B 53 -1 N ASP B 52 O ASN B 44 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.00 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.01 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.10 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.07 SSBOND 5 CYS B 6 CYS B 127 1555 1555 1.99 SSBOND 6 CYS B 30 CYS B 115 1555 1555 2.04 SSBOND 7 CYS B 64 CYS B 80 1555 1555 2.08 SSBOND 8 CYS B 76 CYS B 94 1555 1555 1.99 SITE 1 AC1 3 SER B 24 GLY B 26 GLN B 121 SITE 1 AC2 2 ASP A 87 ILE A 88 SITE 1 AC3 2 ASN A 106 HOH B 198 SITE 1 AC4 1 LYS A 96 SITE 1 AC5 1 HOH B 158 SITE 1 AC6 1 TYR A 23 SITE 1 AC7 3 SER A 24 GLY A 26 GLN A 121 SITE 1 AC8 1 TYR B 23 SITE 1 AC9 2 LYS A 116 ASN B 74 SITE 1 BC1 1 TRP B 62 CRYST1 27.894 63.153 60.227 90.00 90.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035850 0.000000 0.000075 0.00000 SCALE2 0.000000 0.015835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016604 0.00000 MTRIX1 1 0.975515 0.165171 -0.145220 12.82347 1 MTRIX2 1 -0.151950 0.983525 0.097923 -2.73238 1 MTRIX3 1 0.159001 -0.073459 0.984542 31.97197 1