HEADER OXYGEN TRANSPORT 17-MAR-97 1LL1 TITLE HYDROXO BRIDGE MET FORM HEMOCYANIN FROM LIMULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METCYANIN II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BIS(M-HYDROXO) MET FORM METCYANIN; COMPND 5 OTHER_DETAILS: HEMOCYANIN TREATED BY EXCESSIVE AMOUNT OF H2O2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMULUS POLYPHEMUS; SOURCE 3 ORGANISM_COMMON: ATLANTIC HORSESHOE CRAB; SOURCE 4 ORGANISM_TAXID: 6850; SOURCE 5 OTHER_DETAILS: FROM HEMOLYMPH KEYWDS OXYGEN TRANSPORT, RESPIRATORY PROTEIN, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU,K.MAGNUS REVDAT 3 09-AUG-23 1LL1 1 REMARK LINK REVDAT 2 24-FEB-09 1LL1 1 VERSN REVDAT 1 20-AUG-97 1LL1 0 JRNL AUTH S.LIU,H.TON-THAT,K.MAGNUS JRNL TITL CRYSTALLOGRAPHIC STUDIES OF HYDROXO, NITROSYL, AZIDO AND JRNL TITL 2 FLURO MET FORM HEMOCYANIN SUBUNIT II FROM LIMULUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 21960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2276 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1241 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 156 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.43400 REMARK 3 B22 (A**2) : 17.43400 REMARK 3 B33 (A**2) : 17.24000 REMARK 3 B12 (A**2) : 7.06400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.760 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.242 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.297 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.195 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE SEVERAL RESIDUE REMARK 4 REMARK 4 1LL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : SEP-96 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : UCSD REMARK 200 DATA SCALING SOFTWARE : SCALA IN CCP4, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 58.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : 0.18800 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRY 1LLA REMARK 200 REMARK 200 REMARK: THREE DATA SETS MERGED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 4-6% PEG REMARK 280 3350, 0.2M BIS-TRIS, 0.5M NACL, 5MM H2O2. PH IN THE DROP NEAR REMARK 280 6.8., PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 58.30500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.66241 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.20333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 58.30500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.66241 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.20333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 58.30500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.66241 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.20333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 58.30500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.66241 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 95.20333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 58.30500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.66241 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 95.20333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 58.30500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.66241 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 95.20333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.32481 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 190.40667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 67.32481 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 190.40667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 67.32481 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 190.40667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 67.32481 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 190.40667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 67.32481 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 190.40667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 67.32481 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 190.40667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 ASP A 24 REMARK 465 GLY A 25 REMARK 465 ASP A 26 REMARK 465 LYS A 27 REMARK 465 HIS A 28 REMARK 465 LYS A 29 REMARK 465 HIS A 30 REMARK 465 SER A 31 REMARK 465 ASP A 32 REMARK 465 ALA A 132 REMARK 465 HIS A 133 REMARK 465 VAL A 134 REMARK 465 ARG A 135 REMARK 465 PRO A 136 REMARK 465 GLU A 137 REMARK 465 PHE A 138 REMARK 465 ASP A 139 REMARK 465 GLU A 140 REMARK 465 SER A 141 REMARK 465 PRO A 142 REMARK 465 GLN A 148 REMARK 465 ASP A 149 REMARK 465 THR A 150 REMARK 465 HIS A 522 REMARK 465 GLY A 523 REMARK 465 VAL A 524 REMARK 465 GLY A 525 REMARK 465 LEU A 526 REMARK 465 ASN A 527 REMARK 465 GLU A 528 REMARK 465 HIS A 529 REMARK 465 LYS A 530 REMARK 465 ASP A 569 REMARK 465 GLY A 570 REMARK 465 SER A 571 REMARK 465 GLU A 572 REMARK 465 SER A 573 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 1 OG1 CG2 REMARK 470 HIS A 3 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 20 OG1 CG2 REMARK 470 VAL A 21 CG1 CG2 REMARK 470 ILE A 22 CG1 CG2 CD1 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 VAL A 147 CG1 CG2 REMARK 470 ASN A 152 CG OD1 ND2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 ASP A 384 CG OD1 OD2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 ILE A 421 CG1 CG2 CD1 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 432 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 505 CG CD1 CD2 REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 VAL A 574 CG1 CG2 REMARK 470 HIS A 627 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 628 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 389 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 -66.84 -171.26 REMARK 500 LEU A 34 40.67 -93.89 REMARK 500 PHE A 229 0.91 -66.84 REMARK 500 TYR A 236 120.98 -179.49 REMARK 500 ALA A 244 3.25 -65.14 REMARK 500 SER A 245 -2.01 -165.43 REMARK 500 LYS A 247 -164.97 -77.80 REMARK 500 SER A 310 87.24 82.67 REMARK 500 ASN A 316 88.89 -166.90 REMARK 500 ASN A 322 52.41 -156.19 REMARK 500 PRO A 389 -67.83 -29.69 REMARK 500 ASN A 422 112.92 -27.69 REMARK 500 SER A 507 131.61 -35.65 REMARK 500 GLU A 532 -110.60 80.65 REMARK 500 TYR A 533 -14.11 -43.88 REMARK 500 PRO A 591 25.25 -63.72 REMARK 500 PRO A 599 32.02 -94.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 630 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 NE2 REMARK 620 2 HIS A 177 NE2 92.1 REMARK 620 3 HIS A 204 NE2 115.3 103.7 REMARK 620 4 HOH A 675 O 95.1 153.2 96.4 REMARK 620 5 HOH A 730 O 142.0 87.3 101.6 71.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 629 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 324 NE2 REMARK 620 2 HIS A 328 NE2 100.5 REMARK 620 3 HIS A 364 NE2 85.2 92.0 REMARK 620 4 HOH A 675 O 162.1 96.7 89.3 REMARK 620 5 HOH A 730 O 105.8 104.9 157.4 74.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CU2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: DESCRIPTION NOT PROVIDED REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 629 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 630 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 631 DBREF 1LL1 A 1 628 UNP P04253 HCY2_LIMPO 1 628 SEQRES 1 A 628 THR LEU HIS ASP LYS GLN ILE ARG VAL CYS HIS LEU PHE SEQRES 2 A 628 GLU GLN LEU SER SER ALA THR VAL ILE GLY ASP GLY ASP SEQRES 3 A 628 LYS HIS LYS HIS SER ASP ARG LEU LYS ASN VAL GLY LYS SEQRES 4 A 628 LEU GLN PRO GLY ALA ILE PHE SER CYS PHE HIS PRO ASP SEQRES 5 A 628 HIS LEU GLU GLU ALA ARG HIS LEU TYR GLU VAL PHE TRP SEQRES 6 A 628 GLU ALA GLY ASP PHE ASN ASP PHE ILE GLU ILE ALA LYS SEQRES 7 A 628 GLU ALA ARG THR PHE VAL ASN GLU GLY LEU PHE ALA PHE SEQRES 8 A 628 ALA ALA GLU VAL ALA VAL LEU HIS ARG ASP ASP CYS LYS SEQRES 9 A 628 GLY LEU TYR VAL PRO PRO VAL GLN GLU ILE PHE PRO ASP SEQRES 10 A 628 LYS PHE ILE PRO SER ALA ALA ILE ASN GLU ALA PHE LYS SEQRES 11 A 628 LYS ALA HIS VAL ARG PRO GLU PHE ASP GLU SER PRO ILE SEQRES 12 A 628 LEU VAL ASP VAL GLN ASP THR GLY ASN ILE LEU ASP PRO SEQRES 13 A 628 GLU TYR ARG LEU ALA TYR TYR ARG GLU ASP VAL GLY ILE SEQRES 14 A 628 ASN ALA HIS HIS TRP HIS TRP HIS LEU VAL TYR PRO SER SEQRES 15 A 628 THR TRP ASN PRO LYS TYR PHE GLY LYS LYS LYS ASP ARG SEQRES 16 A 628 LYS GLY GLU LEU PHE TYR TYR MET HIS GLN GLN MET CYS SEQRES 17 A 628 ALA ARG TYR ASP CYS GLU ARG LEU SER ASN GLY MET HIS SEQRES 18 A 628 ARG MET LEU PRO PHE ASN ASN PHE ASP GLU PRO LEU ALA SEQRES 19 A 628 GLY TYR ALA PRO HIS LEU THR HIS VAL ALA SER GLY LYS SEQRES 20 A 628 TYR TYR SER PRO ARG PRO ASP GLY LEU LYS LEU ARG ASP SEQRES 21 A 628 LEU GLY ASP ILE GLU ILE SER GLU MET VAL ARG MET ARG SEQRES 22 A 628 GLU ARG ILE LEU ASP SER ILE HIS LEU GLY TYR VAL ILE SEQRES 23 A 628 SER GLU ASP GLY SER HIS LYS THR LEU ASP GLU LEU HIS SEQRES 24 A 628 GLY THR ASP ILE LEU GLY ALA LEU VAL GLU SER SER TYR SEQRES 25 A 628 GLU SER VAL ASN HIS GLU TYR TYR GLY ASN LEU HIS ASN SEQRES 26 A 628 TRP GLY HIS VAL THR MET ALA ARG ILE HIS ASP PRO ASP SEQRES 27 A 628 GLY ARG PHE HIS GLU GLU PRO GLY VAL MET SER ASP THR SEQRES 28 A 628 SER THR SER LEU ARG ASP PRO ILE PHE TYR ASN TRP HIS SEQRES 29 A 628 ARG PHE ILE ASP ASN ILE PHE HIS GLU TYR LYS ASN THR SEQRES 30 A 628 LEU LYS PRO TYR ASP HIS ASP VAL LEU ASN PHE PRO ASP SEQRES 31 A 628 ILE GLN VAL GLN ASP VAL THR LEU HIS ALA ARG VAL ASP SEQRES 32 A 628 ASN VAL VAL HIS THR PHE MET ARG GLU GLN GLU LEU GLU SEQRES 33 A 628 LEU LYS HIS GLY ILE ASN PRO GLY ASN ALA ARG SER ILE SEQRES 34 A 628 LYS ALA ARG TYR TYR HIS LEU ASP HIS GLU PRO PHE SER SEQRES 35 A 628 TYR ALA VAL ASN VAL GLN ASN ASN SER ALA SER ASP LYS SEQRES 36 A 628 HIS ALA THR VAL ARG ILE PHE LEU ALA PRO LYS TYR ASP SEQRES 37 A 628 GLU LEU GLY ASN GLU ILE LYS ALA ASP GLU LEU ARG ARG SEQRES 38 A 628 THR ALA ILE GLU LEU ASP LYS PHE LYS THR ASP LEU HIS SEQRES 39 A 628 PRO GLY LYS ASN THR VAL VAL ARG HIS SER LEU ASP SER SEQRES 40 A 628 SER VAL THR LEU SER HIS GLN PRO THR PHE GLU ASP LEU SEQRES 41 A 628 LEU HIS GLY VAL GLY LEU ASN GLU HIS LYS SER GLU TYR SEQRES 42 A 628 CYS SER CYS GLY TRP PRO SER HIS LEU LEU VAL PRO LYS SEQRES 43 A 628 GLY ASN ILE LYS GLY MET GLU TYR HIS LEU PHE VAL MET SEQRES 44 A 628 LEU THR ASP TRP ASP LYS ASP LYS VAL ASP GLY SER GLU SEQRES 45 A 628 SER VAL ALA CYS VAL ASP ALA VAL SER TYR CYS GLY ALA SEQRES 46 A 628 ARG ASP HIS LYS TYR PRO ASP LYS LYS PRO MET GLY PHE SEQRES 47 A 628 PRO PHE ASP ARG PRO ILE HIS THR GLU HIS ILE SER ASP SEQRES 48 A 628 PHE LEU THR ASN ASN MET PHE ILE LYS ASP ILE LYS ILE SEQRES 49 A 628 LYS PHE HIS GLU HET CU A 629 1 HET CU A 630 1 HET CL A 631 1 HETNAM CU COPPER (II) ION HETNAM CL CHLORIDE ION FORMUL 2 CU 2(CU 2+) FORMUL 4 CL CL 1- FORMUL 5 HOH *137(H2 O) HELIX 1 1 HIS A 3 LEU A 12 1 10 HELIX 2 2 ILE A 22 LEU A 34 5 3 HELIX 3 3 PRO A 51 TRP A 65 1 15 HELIX 4 4 PHE A 70 THR A 82 1 13 HELIX 5 5 GLU A 86 HIS A 99 1 14 HELIX 6 6 VAL A 111 ILE A 114 1 4 HELIX 7 7 PRO A 116 LYS A 118 5 3 HELIX 8 8 SER A 122 GLU A 127 1 6 HELIX 9 9 PRO A 156 ARG A 164 5 9 HELIX 10 10 VAL A 167 VAL A 179 1 13 HELIX 11 11 PRO A 186 PHE A 189 1 4 HELIX 12 12 LYS A 196 SER A 217 1 22 HELIX 13 13 ILE A 266 LEU A 282 1 17 HELIX 14 14 GLY A 300 VAL A 308 1 9 HELIX 15 15 HIS A 317 TYR A 320 1 4 HELIX 16 16 LEU A 323 ALA A 332 1 10 HELIX 17 17 ILE A 334 ASP A 336 5 3 HELIX 18 18 VAL A 347 SER A 349 5 3 HELIX 19 19 SER A 354 ARG A 356 5 3 HELIX 20 20 PRO A 358 THR A 377 1 20 HELIX 21 21 HIS A 383 LEU A 386 1 4 HELIX 22 22 ALA A 476 LEU A 479 1 4 HELIX 23 23 SER A 504 ASP A 506 5 3 HELIX 24 24 PHE A 517 LEU A 520 1 4 HELIX 25 25 SER A 540 LEU A 542 5 3 HELIX 26 26 TRP A 563 ASP A 566 1 4 HELIX 27 27 VAL A 580 CYS A 583 1 4 HELIX 28 28 ILE A 609 ASP A 611 5 3 SHEET 1 A 2 ILE A 143 ASP A 146 0 SHEET 2 A 2 ILE A 429 ARG A 432 1 N LYS A 430 O ILE A 143 SHEET 1 B 2 TYR A 284 ILE A 286 0 SHEET 2 B 2 HIS A 292 THR A 294 -1 N LYS A 293 O VAL A 285 SHEET 1 C 6 TYR A 433 HIS A 438 0 SHEET 2 C 6 VAL A 405 GLN A 413 -1 N GLN A 413 O TYR A 433 SHEET 3 C 6 MET A 617 HIS A 627 1 N LYS A 623 O VAL A 406 SHEET 4 C 6 MET A 552 ASP A 562 -1 N VAL A 558 O PHE A 618 SHEET 5 C 6 LYS A 455 PRO A 465 -1 N ALA A 464 O HIS A 555 SHEET 6 C 6 ILE A 484 LEU A 493 -1 N LEU A 493 O LYS A 455 SHEET 1 D 3 GLY A 496 HIS A 503 0 SHEET 2 D 3 SER A 442 ASN A 449 -1 N ASN A 449 O GLY A 496 SHEET 3 D 3 ILE A 391 HIS A 399 -1 N HIS A 399 O SER A 442 SSBOND 1 CYS A 534 CYS A 576 1555 1555 2.03 SSBOND 2 CYS A 536 CYS A 583 1555 1555 2.03 LINK NE2 HIS A 173 CU CU A 630 1555 1555 1.98 LINK NE2 HIS A 177 CU CU A 630 1555 1555 2.05 LINK NE2 HIS A 204 CU CU A 630 1555 1555 2.34 LINK NE2 HIS A 324 CU CU A 629 1555 1555 1.97 LINK NE2 HIS A 328 CU CU A 629 1555 1555 2.47 LINK NE2 HIS A 364 CU CU A 629 1555 1555 2.12 LINK CU CU A 629 O HOH A 675 1555 1555 1.88 LINK CU CU A 629 O HOH A 730 1555 1555 2.08 LINK CU CU A 630 O HOH A 675 1555 1555 2.02 LINK CU CU A 630 O HOH A 730 1555 1555 2.08 CISPEP 1 PHE A 598 PRO A 599 0 -2.42 SITE 1 CU2 6 HIS A 173 HIS A 177 HIS A 204 HIS A 324 SITE 2 CU2 6 HIS A 328 HIS A 364 SITE 1 AC1 6 HIS A 324 HIS A 328 HIS A 364 CU A 630 SITE 2 AC1 6 HOH A 675 HOH A 730 SITE 1 AC2 6 HIS A 173 HIS A 177 HIS A 204 CU A 629 SITE 2 AC2 6 HOH A 675 HOH A 730 SITE 1 AC3 3 SER A 47 ARG A 333 SER A 349 CRYST1 116.610 116.610 285.610 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008576 0.004951 0.000000 0.00000 SCALE2 0.000000 0.009902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003501 0.00000