HEADER TRANSFERASE 26-APR-02 1LL2 TITLE CRYSTAL STRUCTURE OF RABBIT MUSCLE GLYCOGENIN COMPLEXED WITH UDP- TITLE 2 GLUCOSE AND MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGENIN-1; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.186; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SKELETAL MUSCLE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN-SUBSTRATE COMPLEX, BETA-ALPHA-BETA ROSSMAN-LIKE NUCLEOTIDE KEYWDS 2 BINDING FOLD, DXD MOTIF, NON-PROLINE CIS PEPTIDE BOND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.J.GIBBONS,P.J.ROACH,T.D.HURLEY REVDAT 6 14-FEB-24 1LL2 1 REMARK LINK REVDAT 5 04-APR-18 1LL2 1 REMARK REVDAT 4 13-JUL-11 1LL2 1 VERSN REVDAT 3 24-FEB-09 1LL2 1 VERSN REVDAT 2 12-JUN-02 1LL2 1 JRNL REVDAT 1 15-MAY-02 1LL2 0 JRNL AUTH B.J.GIBBONS,P.J.ROACH,T.D.HURLEY JRNL TITL CRYSTAL STRUCTURE OF THE AUTOCATALYTIC INITIATOR OF GLYCOGEN JRNL TITL 2 BIOSYNTHESIS, GLYCOGENIN. JRNL REF J.MOL.BIOL. V. 319 463 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12051921 JRNL DOI 10.1016/S0022-2836(02)00305-4 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 29435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1496 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.160 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.27 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.190 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.940 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.920 ; 3.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC CONFOCAL OPTICS REMARK 200 OPTICS : OSMIC CONFOCAL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29435 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-10 MG/ML GLYCOGENIN, 0.7 TO 1.2 M REMARK 280 AMMONIUM SULPHATE, AND 100 MM SODIUM PHOSPHATE BUFFER PH 6.6 TO REMARK 280 6.9, PH 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.94350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.43750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.12650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.94350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.43750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.12650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.94350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.43750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.12650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.94350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.43750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.12650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMETRIC UNIT CONTAINS ONE MONOMER. TO CONSTRUCT THE REMARK 300 DIMER APPLY THE FOLLOWING SYMMETRY OPERATIONS: MATRIX:(-1.00000 - REMARK 300 0.00001 0.00002)(0.00001 -1.00000 0.00002)(0.00002 0.00002 1.00000) REMARK 300 TRANSLATION:(-0.00052 -106.87773 0.00065) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -106.87500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 232A REMARK 465 GLU A 232B REMARK 465 GLY A 232C REMARK 465 HIS A 232D REMARK 465 ASP A 232E REMARK 465 PRO A 232F REMARK 465 THR A 232G REMARK 465 MET A 232H REMARK 465 PHE A 263 REMARK 465 GLY A 264 REMARK 465 LEU A 265 REMARK 465 VAL A 266 REMARK 465 GLN A 267 REMARK 465 ASP A 268 REMARK 465 THR A 269 REMARK 465 CYS A 270 REMARK 465 SER A 271 REMARK 465 TYR A 272 REMARK 465 GLN A 273 REMARK 465 HIS A 274 REMARK 465 VAL A 275 REMARK 465 GLU A 276 REMARK 465 ASP A 277 REMARK 465 VAL A 278 REMARK 465 SER A 279 REMARK 465 GLY A 280 REMARK 465 ALA A 281 REMARK 465 VAL A 282 REMARK 465 SER A 283 REMARK 465 HIS A 284 REMARK 465 LEU A 285 REMARK 465 SER A 286 REMARK 465 LEU A 287 REMARK 465 GLY A 288 REMARK 465 GLU A 289 REMARK 465 THR A 290 REMARK 465 PRO A 291 REMARK 465 ALA A 292 REMARK 465 THR A 293 REMARK 465 THR A 294 REMARK 465 GLN A 295 REMARK 465 PRO A 296 REMARK 465 PHE A 297 REMARK 465 VAL A 298 REMARK 465 SER A 299 REMARK 465 SER A 300 REMARK 465 GLU A 301 REMARK 465 GLU A 302 REMARK 465 ARG A 303 REMARK 465 LYS A 304 REMARK 465 GLU A 305 REMARK 465 ARG A 306 REMARK 465 TRP A 307 REMARK 465 GLU A 308 REMARK 465 GLN A 309 REMARK 465 GLY A 310 REMARK 465 GLN A 311 REMARK 465 ALA A 312 REMARK 465 ASP A 313 REMARK 465 TYR A 314 REMARK 465 MET A 315 REMARK 465 GLY A 316 REMARK 465 ALA A 317 REMARK 465 ASP A 318 REMARK 465 SER A 319 REMARK 465 PHE A 320 REMARK 465 ASP A 321 REMARK 465 ASN A 322 REMARK 465 ILE A 323 REMARK 465 LYS A 324 REMARK 465 LYS A 325 REMARK 465 LYS A 326 REMARK 465 LEU A 327 REMARK 465 ASP A 328 REMARK 465 THR A 329 REMARK 465 TYR A 330 REMARK 465 LEU A 331 REMARK 465 GLN A 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 93 1.29 -65.22 REMARK 500 ASP A 104 34.84 -99.59 REMARK 500 ASP A 178 96.74 60.42 REMARK 500 ASN A 188 62.50 -165.78 REMARK 500 SER A 191 -19.34 -46.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 333 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 102 OD2 REMARK 620 2 ASP A 104 OD1 96.9 REMARK 620 3 ASP A 104 OD2 150.2 53.7 REMARK 620 4 HIS A 212 NE2 99.5 95.7 89.7 REMARK 620 5 UPG A 334 O1B 107.6 152.2 100.1 93.0 REMARK 620 6 UPG A 334 O1A 94.6 79.3 76.4 165.5 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LL0 RELATED DB: PDB REMARK 900 PDB ID 1LL0 IS THE ORIGINAL 3.4A MAD STRUCTURE SOLUTION OF REMARK 900 GLYCOGENIN WITH A PENTAMER OF DIMERS IN THE ASYMMETRIC UNIT AND REMARK 900 P4(3)2(1)2 SPACE GROUP. REMARK 900 RELATED ID: 1LL3 RELATED DB: PDB REMARK 900 PDB ID 1LL3 IS A 1.9A APO- ENZYME STRUCTURE OF GLYCOGENIN; I222 REMARK 900 SPACE GROUP. DBREF 1LL2 A 1 332 UNP P13280 GLYG_RABIT 1 333 SEQRES 1 A 333 MET THR ASP GLN ALA PHE VAL THR LEU THR THR ASN ASP SEQRES 2 A 333 ALA TYR ALA LYS GLY ALA LEU VAL LEU GLY SER SER LEU SEQRES 3 A 333 LYS GLN HIS ARG THR SER ARG ARG LEU ALA VAL LEU THR SEQRES 4 A 333 THR PRO GLN VAL SER ASP THR MET ARG LYS ALA LEU GLU SEQRES 5 A 333 ILE VAL PHE ASP GLU VAL ILE THR VAL ASP ILE LEU ASP SEQRES 6 A 333 SER GLY ASP SER ALA HIS LEU THR LEU MET LYS ARG PRO SEQRES 7 A 333 GLU LEU GLY VAL THR LEU THR LYS LEU HIS CYS TRP SER SEQRES 8 A 333 LEU THR GLN TYR SER LYS CYS VAL PHE MET ASP ALA ASP SEQRES 9 A 333 THR LEU VAL LEU ALA ASN ILE ASP ASP LEU PHE GLU ARG SEQRES 10 A 333 GLU GLU LEU SER ALA ALA PRO ASP PRO GLY TRP PRO ASP SEQRES 11 A 333 CYS PHE ASN SER GLY VAL PHE VAL TYR GLN PRO SER VAL SEQRES 12 A 333 GLU THR TYR ASN GLN LEU LEU HIS VAL ALA SER GLU GLN SEQRES 13 A 333 GLY SER PHE ASP GLY GLY ASP GLN GLY LEU LEU ASN THR SEQRES 14 A 333 PHE PHE ASN SER TRP ALA THR THR ASP ILE ARG LYS HIS SEQRES 15 A 333 LEU PRO PHE ILE TYR ASN LEU SER SER ILE SER ILE TYR SEQRES 16 A 333 SER TYR LEU PRO ALA PHE LYS ALA PHE GLY ALA ASN ALA SEQRES 17 A 333 LYS VAL VAL HIS PHE LEU GLY GLN THR LYS PRO TRP ASN SEQRES 18 A 333 TYR THR TYR ASP THR LYS THR LYS SER VAL ARG SER GLU SEQRES 19 A 333 GLY HIS ASP PRO THR MET THR HIS PRO GLN PHE LEU ASN SEQRES 20 A 333 VAL TRP TRP ASP ILE PHE THR THR SER VAL VAL PRO LEU SEQRES 21 A 333 LEU GLN GLN PHE GLY LEU VAL GLN ASP THR CYS SER TYR SEQRES 22 A 333 GLN HIS VAL GLU ASP VAL SER GLY ALA VAL SER HIS LEU SEQRES 23 A 333 SER LEU GLY GLU THR PRO ALA THR THR GLN PRO PHE VAL SEQRES 24 A 333 SER SER GLU GLU ARG LYS GLU ARG TRP GLU GLN GLY GLN SEQRES 25 A 333 ALA ASP TYR MET GLY ALA ASP SER PHE ASP ASN ILE LYS SEQRES 26 A 333 LYS LYS LEU ASP THR TYR LEU GLN HET MN A 333 1 HET UPG A 334 36 HETNAM MN MANGANESE (II) ION HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 MN MN 2+ FORMUL 3 UPG C15 H24 N2 O17 P2 FORMUL 4 HOH *265(H2 O) HELIX 1 1 ASN A 12 HIS A 29 1 18 HELIX 2 2 SER A 44 PHE A 55 1 12 HELIX 3 3 ALA A 70 ARG A 77 1 8 HELIX 4 4 LEU A 80 LEU A 87 1 8 HELIX 5 5 HIS A 88 LEU A 92 5 5 HELIX 6 6 ILE A 111 ARG A 117 5 7 HELIX 7 7 SER A 142 GLN A 156 1 15 HELIX 8 8 GLY A 162 PHE A 171 1 10 HELIX 9 9 ASP A 178 HIS A 182 5 5 HELIX 10 10 PRO A 184 ASN A 188 5 5 HELIX 11 11 ILE A 192 TYR A 197 1 6 HELIX 12 12 TYR A 197 GLY A 205 1 9 HELIX 13 13 ALA A 206 ALA A 208 5 3 HELIX 14 14 LYS A 218 TYR A 222 5 5 HELIX 15 15 HIS A 241 SER A 255 1 15 HELIX 16 16 SER A 255 GLN A 261 1 7 SHEET 1 A 6 GLU A 57 THR A 60 0 SHEET 2 A 6 ARG A 34 THR A 39 1 N THR A 39 O ILE A 59 SHEET 3 A 6 GLN A 4 THR A 10 1 N PHE A 6 O ALA A 36 SHEET 4 A 6 LYS A 97 MET A 101 1 O VAL A 99 N VAL A 7 SHEET 5 A 6 PHE A 132 TYR A 139 -1 O PHE A 137 N PHE A 100 SHEET 6 A 6 SER A 121 PRO A 124 -1 N SER A 121 O VAL A 138 SHEET 1 B 3 THR A 105 VAL A 107 0 SHEET 2 B 3 VAL A 210 HIS A 212 -1 O VAL A 211 N LEU A 106 SHEET 3 B 3 LEU A 189 SER A 190 1 N LEU A 189 O HIS A 212 SHEET 1 C 2 TYR A 224 ASP A 225 0 SHEET 2 C 2 SER A 230 VAL A 231 -1 O SER A 230 N ASP A 225 LINK OD2 ASP A 102 MN MN A 333 1555 1555 2.08 LINK OD1 ASP A 104 MN MN A 333 1555 1555 2.23 LINK OD2 ASP A 104 MN MN A 333 1555 1555 2.59 LINK NE2 HIS A 212 MN MN A 333 1555 1555 2.23 LINK MN MN A 333 O1B UPG A 334 1555 1555 2.11 LINK MN MN A 333 O1A UPG A 334 1555 1555 2.32 CISPEP 1 GLU A 119 LEU A 120 0 -0.84 SITE 1 AC1 4 ASP A 102 ASP A 104 HIS A 212 UPG A 334 SITE 1 AC2 25 LEU A 9 THR A 10 THR A 11 ASN A 12 SITE 2 AC2 25 TYR A 15 ASP A 102 ALA A 103 ASP A 104 SITE 3 AC2 25 ASP A 125 ASN A 133 SER A 134 GLN A 164 SITE 4 AC2 25 HIS A 212 LEU A 214 GLY A 215 LYS A 218 SITE 5 AC2 25 MN A 333 HOH A 356 HOH A 375 HOH A 416 SITE 6 AC2 25 HOH A 459 HOH A 492 HOH A 493 HOH A 520 SITE 7 AC2 25 HOH A 582 CRYST1 57.887 106.875 122.253 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008180 0.00000