HEADER OXIDOREDUCTASE 09-NOV-95 1LLP TITLE LIGNIN PEROXIDASE (ISOZYME H2) PI 4.15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGNIN PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIP4.15; COMPND 5 EC: 1.11.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHANEROCHAETE CHRYSOSPORIUM; SOURCE 3 ORGANISM_TAXID: 5306; SOURCE 4 STRAIN: BKM-F1267; SOURCE 5 ATCC: 24725 KEYWDS HEME PROTEIN, GLYCO PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.H.CHOINOWSKI,K.PIONTEK,T.GLUMOFF REVDAT 8 13-NOV-24 1LLP 1 HETSYN REVDAT 7 29-JUL-20 1LLP 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 14-AUG-19 1LLP 1 REMARK REVDAT 5 17-JUL-19 1LLP 1 REMARK LINK REVDAT 4 13-JUL-11 1LLP 1 VERSN REVDAT 3 15-SEP-09 1LLP 1 HET HETATM REVDAT 2 24-FEB-09 1LLP 1 VERSN REVDAT 1 08-MAR-96 1LLP 0 JRNL AUTH T.CHOINOWSKI,W.BLODIG,K.H.WINTERHALTER,K.PIONTEK JRNL TITL THE CRYSTAL STRUCTURE OF LIGNIN PEROXIDASE AT 1.70 A JRNL TITL 2 RESOLUTION REVEALS A HYDROXY GROUP ON THE CBETA OF JRNL TITL 3 TRYPTOPHAN 171: A NOVEL RADICAL SITE FORMED DURING THE REDOX JRNL TITL 4 CYCLE. JRNL REF J.MOL.BIOL. V. 286 809 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10024453 JRNL DOI 10.1006/JMBI.1998.2507 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.E.SCHOEMAKER,T.K.LUNDELL,R.FLORIS,T.GLUMOFF, REMARK 1 AUTH 2 K.H.WINTERHALTER,K.PIONTEK REMARK 1 TITL DO CARBOHYDRATES PLAY A ROLE IN THE LIGNIN PEROXIDASE CYCLE? REMARK 1 TITL 2 REDOX CATALYSIS IN THE ENDERGONIC REGION OF THE DRIVING REMARK 1 TITL 3 FORCE REMARK 1 REF BIOORG.MED.CHEM. V. 2 509 1994 REMARK 1 REFN ISSN 0968-0896 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.E.SCHOEMAKER,T.K.LUNDELL,A.I.HATAKKA,K.PIONTEK REMARK 1 TITL THE OXIDATION OF VERATRYL ALCOHOL, DIMERIC LIGNIN MODELS AND REMARK 1 TITL 2 LIGNIN BY LIGNIN PEROXIDASE: THE REDOX CYCLE REVISITED REMARK 1 REF FEMS MICROBIOL.REV. V. 13 321 1994 REMARK 1 REFN ISSN 0168-6445 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.PIONTEK,T.GLUMOFF,K.WINTERHALTER REMARK 1 TITL LOW PH CRYSTAL STRUCTURE OF GLYCOSYLATED LIGNIN PEROXIDASE REMARK 1 TITL 2 FROM PHANEROCHAETE CHRYSOSPORIUM AT 2.5 ANGSTROM RESOLUTION REMARK 1 REF FEBS LETT. V. 315 119 1993 REMARK 1 REFN ISSN 0014-5793 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 51641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.690 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.220 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.960 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.540 ; 1.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-93 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 398 O HOH A 399 1.41 REMARK 500 CB TRP A 171 O OH A 381 1.42 REMARK 500 OE2 GLU A 319 C8 A2G A 380 1.65 REMARK 500 CD GLU A 319 C8 A2G A 380 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 89 CD GLU A 89 OE2 0.083 REMARK 500 SER A 324 CB SER A 324 OG 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 11 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 11 CB - CG - OD2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP A 22 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLN A 33 OE1 - CD - NE2 ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 75 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 88 OD1 - CG - OD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 141 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ASP A 152 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ALA A 179 N - CA - CB ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP A 183 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 211 CD - NE - CZ ANGL. DEV. = 42.0 DEGREES REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 GLU A 226 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP A 278 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP A 278 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 HIS A 310 CE1 - NE2 - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 337 CD - NE - CZ ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG A 337 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 337 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 34 64.57 -103.49 REMARK 500 ASN A 298 30.29 -143.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 351 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 O REMARK 620 2 ASP A 48 OD1 81.3 REMARK 620 3 GLY A 66 O 71.9 95.8 REMARK 620 4 ASP A 68 OD1 140.1 87.0 71.5 REMARK 620 5 SER A 70 OG 142.8 94.3 145.1 75.7 REMARK 620 6 HOH A 733 O 100.8 173.2 91.0 95.3 80.1 REMARK 620 7 HOH A 734 O 71.4 88.7 141.8 146.7 71.7 85.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 350 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 176 NE2 REMARK 620 2 HEM A 350 NA 92.5 REMARK 620 3 HEM A 350 NB 92.0 88.5 REMARK 620 4 HEM A 350 NC 93.3 173.9 92.8 REMARK 620 5 HEM A 350 ND 91.8 91.6 176.1 86.7 REMARK 620 6 HOH A 399 O 174.0 85.8 82.2 88.5 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 352 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 177 O REMARK 620 2 SER A 177 OG 71.1 REMARK 620 3 ASP A 194 OD1 78.7 115.3 REMARK 620 4 ASP A 194 OD2 93.1 76.1 49.6 REMARK 620 5 THR A 196 O 82.5 146.6 77.6 126.6 REMARK 620 6 THR A 196 OG1 147.0 141.3 79.0 90.8 69.1 REMARK 620 7 ILE A 199 O 85.8 82.4 150.4 157.6 75.5 102.3 REMARK 620 8 ASP A 201 OD1 141.9 71.7 125.6 85.8 127.7 71.2 81.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 SHEET REMARK 700 SHEET_ID: A; DETERMINATION METHOD: DSSP; SHORT REMARK 700 ANTIPARALLEL BETA-SHEET. REMARK 700 SHEET_ID: B; SHORT ANTIPARALLEL BETA-SHEET. REMARK 700 SHEET_ID: C; SHORT ANTIPARALLEL BETA-SHEET. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: HE3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 1LLP A 1 343 UNP P49012 LIG2_PHACH 29 371 SEQRES 1 A 343 ALA THR CYS ALA ASN GLY LYS THR VAL GLY ASP ALA SER SEQRES 2 A 343 CYS CYS ALA TRP PHE ASP VAL LEU ASP ASP ILE GLN ALA SEQRES 3 A 343 ASN MET PHE HIS GLY GLY GLN CYS GLY ALA GLU ALA HIS SEQRES 4 A 343 GLU SER ILE ARG LEU VAL PHE HIS ASP SER ILE ALA ILE SEQRES 5 A 343 SER PRO ALA MET GLU ALA LYS GLY LYS PHE GLY GLY GLY SEQRES 6 A 343 GLY ALA ASP GLY SER ILE MET ILE PHE ASP THR ILE GLU SEQRES 7 A 343 THR ALA PHE HIS PRO ASN ILE GLY LEU ASP GLU VAL VAL SEQRES 8 A 343 ALA MET GLN LYS PRO PHE VAL GLN LYS HIS GLY VAL THR SEQRES 9 A 343 PRO GLY ASP PHE ILE ALA PHE ALA GLY ALA VAL ALA LEU SEQRES 10 A 343 SER ASN CYS PRO GLY ALA PRO GLN MET ASN PHE PHE THR SEQRES 11 A 343 GLY ARG LYS PRO ALA THR GLN PRO ALA PRO ASP GLY LEU SEQRES 12 A 343 VAL PRO GLU PRO PHE HIS THR VAL ASP GLN ILE ILE ALA SEQRES 13 A 343 ARG VAL ASN ASP ALA GLY GLU PHE ASP GLU LEU GLU LEU SEQRES 14 A 343 VAL TRP MET LEU SER ALA HIS SER VAL ALA ALA VAL ASN SEQRES 15 A 343 ASP VAL ASP PRO THR VAL GLN GLY LEU PRO PHE ASP SER SEQRES 16 A 343 THR PRO GLY ILE PHE ASP SER GLN PHE PHE VAL GLU THR SEQRES 17 A 343 GLN PHE ARG GLY THR LEU PHE PRO GLY SER GLY GLY ASN SEQRES 18 A 343 GLN GLY GLU VAL GLU SER GLY MET ALA GLY GLU ILE ARG SEQRES 19 A 343 ILE GLN THR ASP HIS THR LEU ALA ARG ASP SER ARG THR SEQRES 20 A 343 ALA CYS GLU TRP GLN SER PHE VAL GLY ASN GLN SER LYS SEQRES 21 A 343 LEU VAL ASP ASP PHE GLN PHE ILE PHE LEU ALA LEU THR SEQRES 22 A 343 GLN LEU GLY GLN ASP PRO ASN ALA MET THR ASP CYS SER SEQRES 23 A 343 ASP VAL ILE PRO LEU SER LYS PRO ILE PRO GLY ASN GLY SEQRES 24 A 343 PRO PHE SER PHE PHE PRO PRO GLY LYS SER HIS SER ASP SEQRES 25 A 343 ILE GLU GLN ALA CYS ALA GLU THR PRO PHE PRO SER LEU SEQRES 26 A 343 VAL THR LEU PRO GLY PRO ALA THR SER VAL ALA ARG ILE SEQRES 27 A 343 PRO PRO HIS LYS ALA MODRES 1LLP ASN A 257 ASN GLYCOSYLATION SITE MODRES 1LLP THR A 320 THR GLYCOSYLATION SITE MODRES 1LLP SER A 334 SER GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN A 370 11 HET A2G A 380 14 HET CA A 351 1 HET CA A 352 1 HET OH A 381 1 HET HEM A 350 43 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM OH HYDROXIDE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN HEM HEME FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 MAN C6 H12 O6 FORMUL 4 A2G C8 H15 N O6 FORMUL 5 CA 2(CA 2+) FORMUL 7 OH H O 1- FORMUL 8 HEM C34 H32 FE N4 O4 FORMUL 9 HOH *370(H2 O) HELIX 1 A ALA A 12 CYS A 15 5 4 HELIX 2 A1 ALA A 16 ASN A 27 1 12 HELIX 3 B ALA A 36 SER A 49 1 14 HELIX 4 C PRO A 54 ALA A 58 1 5 HELIX 5 D SER A 70 ILE A 73 1 4 HELIX 6 D1 ASP A 75 GLU A 78 1 4 HELIX 7 E HIS A 82 ASN A 84 5 3 HELIX 8 F LEU A 87 HIS A 101 1 15 HELIX 9 G PRO A 105 SER A 118 1 14 HELIX 10 H VAL A 151 GLY A 162 1 12 HELIX 11 I GLU A 166 MET A 172 1 7 HELIX 12 I1 LEU A 173 VAL A 178 1 6 HELIX 13 K GLN A 203 GLU A 207 1 5 HELIX 14 L GLN A 236 LEU A 241 1 6 HELIX 15 M GLN A 258 THR A 273 1 16 HELIX 16 N PRO A 279 ALA A 281 5 3 HELIX 17 O SER A 286 VAL A 288 5 3 HELIX 18 R HIS A 310 ASP A 312 5 3 SHEET 1 A 2 PHE A 129 THR A 130 0 SHEET 2 A 2 THR A 283 ASP A 284 -1 N THR A 283 O THR A 130 SHEET 1 B 2 ALA A 180 VAL A 181 0 SHEET 2 B 2 LEU A 191 PRO A 192 -1 N LEU A 191 O VAL A 181 SHEET 1 C 2 GLU A 224 VAL A 225 0 SHEET 2 C 2 ARG A 234 ILE A 235 -1 N ARG A 234 O VAL A 225 SSBOND 1 CYS A 3 CYS A 15 1555 1555 2.07 SSBOND 2 CYS A 14 CYS A 285 1555 1555 2.01 SSBOND 3 CYS A 34 CYS A 120 1555 1555 2.04 SSBOND 4 CYS A 249 CYS A 317 1555 1555 2.02 LINK ND2 ASN A 257 C1 NAG B 1 1555 1555 1.42 LINK OG1 THR A 320 C1 A2G A 380 1555 1555 1.47 LINK OG SER A 334 C1 MAN A 370 1555 1555 1.40 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.56 LINK O ASP A 48 CA CA A 351 1555 1555 2.54 LINK OD1 ASP A 48 CA CA A 351 1555 1555 2.34 LINK O GLY A 66 CA CA A 351 1555 1555 2.43 LINK OD1 ASP A 68 CA CA A 351 1555 1555 2.44 LINK OG SER A 70 CA CA A 351 1555 1555 2.49 LINK NE2 HIS A 176 FE HEM A 350 1555 1555 2.15 LINK O SER A 177 CA CA A 352 1555 1555 2.40 LINK OG SER A 177 CA CA A 352 1555 1555 2.54 LINK OD1 ASP A 194 CA CA A 352 1555 1555 2.72 LINK OD2 ASP A 194 CA CA A 352 1555 1555 2.45 LINK O THR A 196 CA CA A 352 1555 1555 2.38 LINK OG1 THR A 196 CA CA A 352 1555 1555 2.54 LINK O ILE A 199 CA CA A 352 1555 1555 2.48 LINK OD1 ASP A 201 CA CA A 352 1555 1555 2.45 LINK FE HEM A 350 O HOH A 399 1555 1555 2.27 LINK CA CA A 351 O HOH A 733 1555 1555 2.41 LINK CA CA A 351 O HOH A 734 1555 1555 2.53 SITE 1 HE3 1 HEM A 350 CRYST1 60.700 74.710 106.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013385 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009403 0.00000