HEADER LIPID BINDING PROTEIN 02-MAY-02 1LN2 TITLE CRYSTAL STRUCTURE OF HUMAN PHOSPHATIDYLCHOLINE TRANSFER PROTEIN IN TITLE 2 COMPLEX WITH DILINOLEOYLPHOSPHATIDYLCHOLINE (SELENO-MET PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLCHOLINE TRANSFER PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PC-TP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS START DOMAIN, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.L.RODERICK,W.W.CHAN,D.S.AGATE,L.R.OLSEN,M.W.VETTING, AUTHOR 2 K.R.RAJASHANKAR,D.E.COHEN REVDAT 3 11-OCT-17 1LN2 1 REMARK REVDAT 2 24-FEB-09 1LN2 1 VERSN REVDAT 1 26-JUN-02 1LN2 0 JRNL AUTH S.L.RODERICK,W.W.CHAN,D.S.AGATE,L.R.OLSEN,M.W.VETTING, JRNL AUTH 2 K.R.RAJASHANKAR,D.E.COHEN JRNL TITL STRUCTURE OF HUMAN PHOSPHATIDYLCHOLINE TRANSFER PROTEIN IN JRNL TITL 2 COMPLEX WITH ITS LIGAND. JRNL REF NAT.STRUCT.BIOL. V. 9 507 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12055623 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 16893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 822 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2528 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.71 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.160 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.750 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.000 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.300 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.760 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 41.98 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PC2_NEW.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : PC2_NEW.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 117 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 67.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.04800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, SODIUM ACETATE, PH REMARK 280 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 67.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 67.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 67.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. TWO MONOMERS ARE REMARK 300 RELATED BY APPROXIMATELY (1/2,1/2,1/2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 LEU A 211 REMARK 465 LYS A 212 REMARK 465 LYS A 213 REMARK 465 THR A 214 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 SER B 7 REMARK 465 LEU B 211 REMARK 465 LYS B 212 REMARK 465 LYS B 213 REMARK 465 THR B 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 19 CD GLU A 19 OE2 0.098 REMARK 500 CYS B 63 CB CYS B 63 SG 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 179 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 PRO B 179 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -168.84 -104.06 REMARK 500 GLU A 11 -74.03 -26.31 REMARK 500 ALA A 18 -79.00 -51.42 REMARK 500 GLU A 19 -19.99 -41.28 REMARK 500 ASP A 29 64.06 -63.32 REMARK 500 LEU A 33 -39.88 -164.91 REMARK 500 SER A 37 15.64 36.34 REMARK 500 ASP A 62 5.89 83.44 REMARK 500 GLN A 83 -18.03 -36.07 REMARK 500 ASN A 94 -127.75 62.65 REMARK 500 MSE A 109 137.89 -38.38 REMARK 500 MSE A 125 125.09 -34.48 REMARK 500 LYS A 166 -122.95 -86.86 REMARK 500 ASN A 194 -53.51 -132.76 REMARK 500 ALA B 18 -71.20 -61.60 REMARK 500 LEU B 25 -1.53 -140.32 REMARK 500 ASP B 29 35.45 -81.53 REMARK 500 LEU B 33 -29.65 -153.13 REMARK 500 SER B 37 43.39 27.36 REMARK 500 ASP B 46 65.97 -114.42 REMARK 500 LYS B 47 -28.53 -18.42 REMARK 500 ASP B 62 5.11 84.36 REMARK 500 ASN B 94 -139.73 78.99 REMARK 500 ASN B 111 -168.34 -60.00 REMARK 500 LYS B 166 -109.58 -109.33 REMARK 500 LYS B 201 -71.52 -61.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 100 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DLP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DLP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LN1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHATIDYLCHOLINE TRANSFER PROTEIN IN REMARK 900 COMPLEX WITH DILINOLEOYLPHOSPHATIDYLCHOLINE REMARK 900 RELATED ID: 1LN3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHATIDYLCHOLINE TRANSFER PROTEIN IN REMARK 900 COMPLEX WITH PALMITOYL-LINOLEOYL PHOSPHATIDYLCHOLINE DBREF 1LN2 A 1 214 UNP Q9UKL6 PPCT_HUMAN 1 214 DBREF 1LN2 B 1 214 UNP Q9UKL6 PPCT_HUMAN 1 214 SEQADV 1LN2 MSE A 1 UNP Q9UKL6 MET 1 MODIFIED RESIDUE SEQADV 1LN2 MSE A 73 UNP Q9UKL6 MET 73 MODIFIED RESIDUE SEQADV 1LN2 MSE A 109 UNP Q9UKL6 MET 109 MODIFIED RESIDUE SEQADV 1LN2 MSE A 125 UNP Q9UKL6 MET 125 MODIFIED RESIDUE SEQADV 1LN2 MSE A 140 UNP Q9UKL6 MET 140 MODIFIED RESIDUE SEQADV 1LN2 MSE A 173 UNP Q9UKL6 MET 173 MODIFIED RESIDUE SEQADV 1LN2 MSE A 203 UNP Q9UKL6 MET 203 MODIFIED RESIDUE SEQADV 1LN2 MSE B 1 UNP Q9UKL6 MET 1 MODIFIED RESIDUE SEQADV 1LN2 MSE B 73 UNP Q9UKL6 MET 73 MODIFIED RESIDUE SEQADV 1LN2 MSE B 109 UNP Q9UKL6 MET 109 MODIFIED RESIDUE SEQADV 1LN2 MSE B 125 UNP Q9UKL6 MET 125 MODIFIED RESIDUE SEQADV 1LN2 MSE B 140 UNP Q9UKL6 MET 140 MODIFIED RESIDUE SEQADV 1LN2 MSE B 173 UNP Q9UKL6 MET 173 MODIFIED RESIDUE SEQADV 1LN2 MSE B 203 UNP Q9UKL6 MET 203 MODIFIED RESIDUE SEQRES 1 A 214 MSE GLU LEU ALA ALA GLY SER PHE SER GLU GLU GLN PHE SEQRES 2 A 214 TRP GLU ALA CYS ALA GLU LEU GLN GLN PRO ALA LEU ALA SEQRES 3 A 214 GLY ALA ASP TRP GLN LEU LEU VAL GLU THR SER GLY ILE SEQRES 4 A 214 SER ILE TYR ARG LEU LEU ASP LYS LYS THR GLY LEU TYR SEQRES 5 A 214 GLU TYR LYS VAL PHE GLY VAL LEU GLU ASP CYS SER PRO SEQRES 6 A 214 THR LEU LEU ALA ASP ILE TYR MSE ASP SER ASP TYR ARG SEQRES 7 A 214 LYS GLN TRP ASP GLN TYR VAL LYS GLU LEU TYR GLU GLN SEQRES 8 A 214 GLU CYS ASN GLY GLU THR VAL VAL TYR TRP GLU VAL LYS SEQRES 9 A 214 TYR PRO PHE PRO MSE SER ASN ARG ASP TYR VAL TYR LEU SEQRES 10 A 214 ARG GLN ARG ARG ASP LEU ASP MSE GLU GLY ARG LYS ILE SEQRES 11 A 214 HIS VAL ILE LEU ALA ARG SER THR SER MSE PRO GLN LEU SEQRES 12 A 214 GLY GLU ARG SER GLY VAL ILE ARG VAL LYS GLN TYR LYS SEQRES 13 A 214 GLN SER LEU ALA ILE GLU SER ASP GLY LYS LYS GLY SER SEQRES 14 A 214 LYS VAL PHE MSE TYR TYR PHE ASP ASN PRO GLY GLY GLN SEQRES 15 A 214 ILE PRO SER TRP LEU ILE ASN TRP ALA ALA LYS ASN GLY SEQRES 16 A 214 VAL PRO ASN PHE LEU LYS ASP MSE ALA ARG ALA CYS GLN SEQRES 17 A 214 ASN TYR LEU LYS LYS THR SEQRES 1 B 214 MSE GLU LEU ALA ALA GLY SER PHE SER GLU GLU GLN PHE SEQRES 2 B 214 TRP GLU ALA CYS ALA GLU LEU GLN GLN PRO ALA LEU ALA SEQRES 3 B 214 GLY ALA ASP TRP GLN LEU LEU VAL GLU THR SER GLY ILE SEQRES 4 B 214 SER ILE TYR ARG LEU LEU ASP LYS LYS THR GLY LEU TYR SEQRES 5 B 214 GLU TYR LYS VAL PHE GLY VAL LEU GLU ASP CYS SER PRO SEQRES 6 B 214 THR LEU LEU ALA ASP ILE TYR MSE ASP SER ASP TYR ARG SEQRES 7 B 214 LYS GLN TRP ASP GLN TYR VAL LYS GLU LEU TYR GLU GLN SEQRES 8 B 214 GLU CYS ASN GLY GLU THR VAL VAL TYR TRP GLU VAL LYS SEQRES 9 B 214 TYR PRO PHE PRO MSE SER ASN ARG ASP TYR VAL TYR LEU SEQRES 10 B 214 ARG GLN ARG ARG ASP LEU ASP MSE GLU GLY ARG LYS ILE SEQRES 11 B 214 HIS VAL ILE LEU ALA ARG SER THR SER MSE PRO GLN LEU SEQRES 12 B 214 GLY GLU ARG SER GLY VAL ILE ARG VAL LYS GLN TYR LYS SEQRES 13 B 214 GLN SER LEU ALA ILE GLU SER ASP GLY LYS LYS GLY SER SEQRES 14 B 214 LYS VAL PHE MSE TYR TYR PHE ASP ASN PRO GLY GLY GLN SEQRES 15 B 214 ILE PRO SER TRP LEU ILE ASN TRP ALA ALA LYS ASN GLY SEQRES 16 B 214 VAL PRO ASN PHE LEU LYS ASP MSE ALA ARG ALA CYS GLN SEQRES 17 B 214 ASN TYR LEU LYS LYS THR MODRES 1LN2 MSE A 73 MET SELENOMETHIONINE MODRES 1LN2 MSE A 109 MET SELENOMETHIONINE MODRES 1LN2 MSE A 125 MET SELENOMETHIONINE MODRES 1LN2 MSE A 140 MET SELENOMETHIONINE MODRES 1LN2 MSE A 173 MET SELENOMETHIONINE MODRES 1LN2 MSE A 203 MET SELENOMETHIONINE MODRES 1LN2 MSE B 73 MET SELENOMETHIONINE MODRES 1LN2 MSE B 109 MET SELENOMETHIONINE MODRES 1LN2 MSE B 125 MET SELENOMETHIONINE MODRES 1LN2 MSE B 140 MET SELENOMETHIONINE MODRES 1LN2 MSE B 173 MET SELENOMETHIONINE MODRES 1LN2 MSE B 203 MET SELENOMETHIONINE HET MSE A 73 8 HET MSE A 109 8 HET MSE A 125 8 HET MSE A 140 8 HET MSE A 173 8 HET MSE A 203 8 HET MSE B 73 8 HET MSE B 109 8 HET MSE B 125 8 HET MSE B 140 8 HET MSE B 173 8 HET MSE B 203 8 HET DLP A 300 54 HET DLP B 301 54 HETNAM MSE SELENOMETHIONINE HETNAM DLP 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETSYN DLP DI-LINOLEOYL-3-SN-PHOSPHATIDYLCHOLINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 DLP 2(C44 H80 N O8 P) FORMUL 5 HOH *68(H2 O) HELIX 1 1 SER A 9 GLN A 22 1 14 HELIX 2 2 SER A 64 ASP A 74 1 11 HELIX 3 3 ASP A 74 ASP A 82 1 9 HELIX 4 4 ASP A 124 ARG A 128 5 5 HELIX 5 5 PRO A 184 ASN A 194 1 11 HELIX 6 6 ASN A 194 ASN A 209 1 16 HELIX 7 7 SER B 9 GLN B 22 1 14 HELIX 8 8 SER B 64 ASP B 74 1 11 HELIX 9 9 ASP B 74 ASP B 82 1 9 HELIX 10 10 ASP B 124 ARG B 128 5 5 HELIX 11 11 PRO B 184 ASN B 194 1 11 HELIX 12 12 ASN B 194 TYR B 210 1 17 SHEET 1 A 9 VAL A 34 THR A 36 0 SHEET 2 A 9 ILE A 39 LEU A 45 -1 O ILE A 41 N VAL A 34 SHEET 3 A 9 TYR A 52 LEU A 60 -1 O LYS A 55 N TYR A 42 SHEET 4 A 9 SER A 169 ASN A 178 -1 O MSE A 173 N VAL A 56 SHEET 5 A 9 GLN A 154 SER A 163 -1 N ALA A 160 O PHE A 172 SHEET 6 A 9 ILE A 130 SER A 137 -1 N ALA A 135 O GLN A 157 SHEET 7 A 9 ARG A 112 LEU A 123 -1 N LEU A 117 O ARG A 136 SHEET 8 A 9 GLU A 96 VAL A 103 -1 N VAL A 99 O TYR A 116 SHEET 9 A 9 VAL A 85 CYS A 93 -1 N GLU A 87 O GLU A 102 SHEET 1 B 8 VAL A 34 THR A 36 0 SHEET 2 B 8 ILE A 39 LEU A 45 -1 O ILE A 41 N VAL A 34 SHEET 3 B 8 TYR A 52 LEU A 60 -1 O LYS A 55 N TYR A 42 SHEET 4 B 8 SER A 169 ASN A 178 -1 O MSE A 173 N VAL A 56 SHEET 5 B 8 GLN A 154 SER A 163 -1 N ALA A 160 O PHE A 172 SHEET 6 B 8 ILE A 130 SER A 137 -1 N ALA A 135 O GLN A 157 SHEET 7 B 8 ARG A 112 LEU A 123 -1 N LEU A 117 O ARG A 136 SHEET 8 B 8 ILE A 150 VAL A 152 1 O ILE A 150 N ASP A 113 SHEET 1 C 9 GLN B 31 THR B 36 0 SHEET 2 C 9 ILE B 39 LEU B 45 -1 O ARG B 43 N GLN B 31 SHEET 3 C 9 TYR B 52 LEU B 60 -1 O LYS B 55 N TYR B 42 SHEET 4 C 9 SER B 169 ASP B 177 -1 O TYR B 175 N TYR B 54 SHEET 5 C 9 TYR B 155 SER B 163 -1 N LYS B 156 O PHE B 176 SHEET 6 C 9 ILE B 130 SER B 137 -1 N HIS B 131 O ILE B 161 SHEET 7 C 9 ARG B 112 LEU B 123 -1 N LEU B 117 O ARG B 136 SHEET 8 C 9 GLU B 96 VAL B 103 -1 N VAL B 103 O ARG B 112 SHEET 9 C 9 VAL B 85 CYS B 93 -1 N CYS B 93 O GLU B 96 SHEET 1 D 8 GLN B 31 THR B 36 0 SHEET 2 D 8 ILE B 39 LEU B 45 -1 O ARG B 43 N GLN B 31 SHEET 3 D 8 TYR B 52 LEU B 60 -1 O LYS B 55 N TYR B 42 SHEET 4 D 8 SER B 169 ASP B 177 -1 O TYR B 175 N TYR B 54 SHEET 5 D 8 TYR B 155 SER B 163 -1 N LYS B 156 O PHE B 176 SHEET 6 D 8 ILE B 130 SER B 137 -1 N HIS B 131 O ILE B 161 SHEET 7 D 8 ARG B 112 LEU B 123 -1 N LEU B 117 O ARG B 136 SHEET 8 D 8 ILE B 150 VAL B 152 1 O VAL B 152 N ASP B 113 LINK C TYR A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N ASP A 74 1555 1555 1.33 LINK C PRO A 108 N MSE A 109 1555 1555 1.34 LINK C MSE A 109 N SER A 110 1555 1555 1.32 LINK C ASP A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N GLU A 126 1555 1555 1.35 LINK C SER A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N PRO A 141 1555 1555 1.33 LINK C PHE A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N TYR A 174 1555 1555 1.33 LINK C ASP A 202 N MSE A 203 1555 1555 1.32 LINK C MSE A 203 N ALA A 204 1555 1555 1.33 LINK C TYR B 72 N MSE B 73 1555 1555 1.33 LINK C MSE B 73 N ASP B 74 1555 1555 1.33 LINK C PRO B 108 N MSE B 109 1555 1555 1.32 LINK C MSE B 109 N SER B 110 1555 1555 1.33 LINK C ASP B 124 N MSE B 125 1555 1555 1.34 LINK C MSE B 125 N GLU B 126 1555 1555 1.35 LINK C SER B 139 N MSE B 140 1555 1555 1.32 LINK C MSE B 140 N PRO B 141 1555 1555 1.31 LINK C PHE B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N TYR B 174 1555 1555 1.32 LINK C ASP B 202 N MSE B 203 1555 1555 1.32 LINK C MSE B 203 N ALA B 204 1555 1555 1.32 CISPEP 1 PHE A 107 PRO A 108 0 6.03 CISPEP 2 PHE B 107 PRO B 108 0 -0.56 SITE 1 AC1 22 LEU A 33 VAL A 34 ILE A 41 TYR A 54 SITE 2 AC1 22 LEU A 68 TYR A 72 ARG A 78 TYR A 84 SITE 3 AC1 22 TRP A 101 VAL A 103 TYR A 114 TYR A 116 SITE 4 AC1 22 TYR A 155 GLN A 157 LEU A 159 MSE A 173 SITE 5 AC1 22 TYR A 175 ALA A 192 VAL A 196 PHE A 199 SITE 6 AC1 22 LEU A 200 HOH A2013 SITE 1 AC2 21 LEU B 33 VAL B 34 ILE B 41 TYR B 54 SITE 2 AC2 21 VAL B 56 TYR B 72 ARG B 78 TYR B 84 SITE 3 AC2 21 TRP B 101 VAL B 103 TYR B 105 TYR B 114 SITE 4 AC2 21 TYR B 116 TYR B 155 GLN B 157 LEU B 159 SITE 5 AC2 21 MSE B 173 TYR B 175 ALA B 192 VAL B 196 SITE 6 AC2 21 PHE B 199 CRYST1 134.700 134.700 82.700 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012092 0.00000