HEADER SIGNALING PROTEIN/RNA 03-MAY-02 1LNG TITLE CRYSTAL STRUCTURE OF THE SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7S.S SRP RNA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: SRP19; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 OTHER_DETAILS: IN VITRO TRANSCRIPTION; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 7 ORGANISM_TAXID: 2190; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-RNA COMPLEX, SIGNALING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON REVDAT 7 16-AUG-23 1LNG 1 REMARK LINK REVDAT 6 24-JUL-19 1LNG 1 REMARK REVDAT 5 07-MAR-18 1LNG 1 REMARK REVDAT 4 24-FEB-09 1LNG 1 VERSN REVDAT 3 01-APR-03 1LNG 1 JRNL REVDAT 2 10-JUL-02 1LNG 1 JRNL REVDAT 1 07-JUN-02 1LNG 0 JRNL AUTH T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON JRNL TITL STRUCTURE OF THE SRP19 RNA COMPLEX AND IMPLICATIONS FOR JRNL TITL 2 SIGNAL RECOGNITION PARTICLE ASSEMBLY. JRNL REF NATURE V. 417 767 2002 JRNL REFN ISSN 0028-0836 JRNL PMID 12050674 JRNL DOI 10.1038/NATURE00768 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 17651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 955 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 727 REMARK 3 NUCLEIC ACID ATOMS : 2080 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.02000 REMARK 3 B22 (A**2) : 2.18000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.389 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.098 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3075 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4628 ; 2.704 ; 2.788 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 86 ; 3.917 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 174 ;23.294 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1540 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1434 ; 0.273 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 307 ; 0.257 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.245 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.316 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 435 ; 0.826 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 705 ; 1.598 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 1.684 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3923 ; 2.539 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3583 -9.4664 34.9391 REMARK 3 T TENSOR REMARK 3 T11: 0.2885 T22: 0.2493 REMARK 3 T33: 0.3706 T12: 0.0060 REMARK 3 T13: -0.0115 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.6047 L22: 1.2217 REMARK 3 L33: 0.6923 L12: -0.1131 REMARK 3 L13: -0.1255 L23: -0.2236 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.0043 S13: -0.0402 REMARK 3 S21: -0.0369 S22: -0.0043 S23: 0.0634 REMARK 3 S31: -0.0041 S32: -0.0422 S33: -0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 148 REMARK 3 RESIDUE RANGE : B 233 B 236 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5041 -3.5636 95.3851 REMARK 3 T TENSOR REMARK 3 T11: 0.6288 T22: 0.2949 REMARK 3 T33: 0.1713 T12: -0.0151 REMARK 3 T13: -0.0413 T23: -0.1118 REMARK 3 L TENSOR REMARK 3 L11: 3.1869 L22: 0.6394 REMARK 3 L33: 6.7911 L12: -1.2550 REMARK 3 L13: 2.7314 L23: -2.3148 REMARK 3 S TENSOR REMARK 3 S11: -0.3703 S12: -0.2321 S13: -0.0403 REMARK 3 S21: -0.4271 S22: 0.0993 S23: -0.2539 REMARK 3 S31: -0.6070 S32: -0.4760 S33: 0.2709 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 182 B 198 REMARK 3 RESIDUE RANGE : B 226 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9950 -4.1034 79.9917 REMARK 3 T TENSOR REMARK 3 T11: 0.2190 T22: 0.5546 REMARK 3 T33: 0.0245 T12: -0.0713 REMARK 3 T13: -0.0076 T23: 0.1160 REMARK 3 L TENSOR REMARK 3 L11: 4.3689 L22: 3.4800 REMARK 3 L33: 14.3823 L12: -1.4749 REMARK 3 L13: 1.6162 L23: -1.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.1599 S12: -0.0157 S13: -0.2808 REMARK 3 S21: 0.3397 S22: -0.1936 S23: -0.2206 REMARK 3 S31: -0.3272 S32: 0.9557 S33: 0.3535 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 149 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5318 3.8451 56.2306 REMARK 3 T TENSOR REMARK 3 T11: 0.3344 T22: 0.3237 REMARK 3 T33: 0.3243 T12: 0.0011 REMARK 3 T13: -0.0140 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.8089 L22: 0.8044 REMARK 3 L33: -0.1932 L12: -0.4015 REMARK 3 L13: 0.2603 L23: -0.5647 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: -0.1655 S13: 0.1075 REMARK 3 S21: 0.1695 S22: 0.0501 S23: -0.0159 REMARK 3 S31: -0.1041 S32: -0.0784 S33: 0.0172 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 199 B 225 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0895 -3.0503 49.9714 REMARK 3 T TENSOR REMARK 3 T11: 0.3123 T22: 0.3502 REMARK 3 T33: 0.3148 T12: 0.0018 REMARK 3 T13: 0.0126 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9100 L22: 0.2983 REMARK 3 L33: -0.8957 L12: 0.0633 REMARK 3 L13: 0.0515 L23: 0.0562 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: -0.2183 S13: -0.0160 REMARK 3 S21: -0.0120 S22: 0.0443 S23: 0.0077 REMARK 3 S31: -0.0650 S32: 0.0968 S33: -0.1267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRIES 1D4R AND 1DUL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, HEPES, MGAC, CACL, DMSO, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.26050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.98900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.70250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.98900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.26050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.70250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U B 183 C5' U B 183 C4' -0.045 REMARK 500 G B 213 P G B 213 O5' -0.065 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C B 141 O5' - C5' - C4' ANGL. DEV. = -11.2 DEGREES REMARK 500 C B 141 C5' - C4' - C3' ANGL. DEV. = -8.8 DEGREES REMARK 500 A B 156 N9 - C1' - C2' ANGL. DEV. = 7.8 DEGREES REMARK 500 U B 159 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 C B 161 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 G B 163 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 U B 164 O4' - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 G B 167 O3' - P - OP1 ANGL. DEV. = 10.1 DEGREES REMARK 500 C B 182 C4' - C3' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 C B 182 C3' - C2' - C1' ANGL. DEV. = -7.3 DEGREES REMARK 500 C B 182 N1 - C1' - C2' ANGL. DEV. = -10.4 DEGREES REMARK 500 U B 183 P - O5' - C5' ANGL. DEV. = -11.2 DEGREES REMARK 500 U B 183 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 U B 184 C5' - C4' - C3' ANGL. DEV. = -9.4 DEGREES REMARK 500 U B 184 C3' - C2' - C1' ANGL. DEV. = -9.9 DEGREES REMARK 500 U B 184 O4' - C1' - N1 ANGL. DEV. = -6.9 DEGREES REMARK 500 U B 184 C3' - O3' - P ANGL. DEV. = -11.1 DEGREES REMARK 500 U B 185 O4' - C4' - C3' ANGL. DEV. = -9.4 DEGREES REMARK 500 U B 185 C5' - C4' - C3' ANGL. DEV. = 10.5 DEGREES REMARK 500 U B 185 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 U B 185 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 A B 186 O3' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 A B 186 O5' - P - OP2 ANGL. DEV. = -8.1 DEGREES REMARK 500 A B 203 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 G B 204 N9 - C1' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 G B 204 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 C B 207 O3' - P - OP1 ANGL. DEV. = 10.0 DEGREES REMARK 500 C B 207 O5' - P - OP2 ANGL. DEV. = -7.4 DEGREES REMARK 500 A B 212 C3' - O3' - P ANGL. DEV. = -9.6 DEGREES REMARK 500 G B 213 O5' - C5' - C4' ANGL. DEV. = -9.5 DEGREES REMARK 500 G B 213 C5' - C4' - O4' ANGL. DEV. = 8.0 DEGREES REMARK 500 G B 213 C5 - C6 - O6 ANGL. DEV. = -4.8 DEGREES REMARK 500 G B 214 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 G B 214 C5' - C4' - O4' ANGL. DEV. = 8.5 DEGREES REMARK 500 G B 214 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 U B 224 P - O5' - C5' ANGL. DEV. = -10.7 DEGREES REMARK 500 A B 232 C4' - C3' - C2' ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 VAL A 66 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 28 70.57 40.72 REMARK 500 LYS A 84 1.45 -69.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 204 OP2 REMARK 620 2 HOH B 544 O 74.2 REMARK 620 3 HOH B 545 O 158.8 110.6 REMARK 620 4 HOH B 546 O 90.6 73.0 110.6 REMARK 620 5 HOH B 547 O 74.9 146.5 94.0 120.0 REMARK 620 6 HOH B 548 O 77.3 72.0 84.5 144.9 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 209 N7 REMARK 620 2 A B 211 OP2 78.2 REMARK 620 3 HOH B 549 O 93.4 129.0 REMARK 620 4 HOH B 550 O 85.1 130.6 97.8 REMARK 620 5 HOH B 551 O 153.7 106.0 102.8 72.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 DBREF 1LNG A 1 87 UNP Q58440 SRP19_METJA 1 87 DBREF 1LNG B 140 236 PDB 1LNG 1LNG 140 236 SEQRES 1 B 97 U C G G C G G U G G G G G SEQRES 2 B 97 A G C A U C U C C U G U A SEQRES 3 B 97 G G G G A G A U G U A A C SEQRES 4 B 97 C C C C U U U A C C U G C SEQRES 5 B 97 C G A A C C C C G C C A G SEQRES 6 B 97 G C C C G G A A G G G A G SEQRES 7 B 97 C A A C G G U A G G C A G SEQRES 8 B 97 G A C G U C SEQRES 1 A 87 MET ILE ILE TRP PRO SER TYR ILE ASP LYS LYS LYS SER SEQRES 2 A 87 ARG ARG GLU GLY ARG LYS VAL PRO GLU GLU LEU ALA ILE SEQRES 3 A 87 GLU LYS PRO SER LEU LYS ASP ILE GLU LYS ALA LEU LYS SEQRES 4 A 87 LYS LEU GLY LEU GLU PRO LYS ILE TYR ARG ASP LYS ARG SEQRES 5 A 87 TYR PRO ARG GLN HIS TRP GLU ILE CYS GLY CYS VAL GLU SEQRES 6 A 87 VAL ASP TYR LYS GLY ASN LYS LEU GLN LEU LEU LYS GLU SEQRES 7 A 87 ILE CYS LYS ILE ILE LYS GLY LYS ASN HET MG B 401 1 HET MG B 402 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *208(H2 O) HELIX 1 1 TRP A 4 ILE A 8 5 5 HELIX 2 2 SER A 30 LEU A 41 1 12 HELIX 3 3 TYR A 53 HIS A 57 5 5 HELIX 4 4 ASN A 71 LYS A 84 1 14 SHEET 1 A 3 ILE A 2 ILE A 3 0 SHEET 2 A 3 CYS A 63 GLU A 65 -1 O VAL A 64 N ILE A 3 SHEET 3 A 3 LYS A 46 TYR A 48 -1 N TYR A 48 O CYS A 63 LINK OP2 G B 204 MG MG B 401 1555 1555 2.40 LINK N7 G B 209 MG MG B 402 1555 1555 3.06 LINK OP2 A B 211 MG MG B 402 1555 1555 2.79 LINK MG MG B 401 O HOH B 544 1555 1555 2.03 LINK MG MG B 401 O HOH B 545 1555 1555 1.94 LINK MG MG B 401 O HOH B 546 1555 1555 2.02 LINK MG MG B 401 O HOH B 547 1555 1555 2.06 LINK MG MG B 401 O HOH B 548 1555 1555 2.03 LINK MG MG B 402 O HOH B 549 1555 1555 2.21 LINK MG MG B 402 O HOH B 550 1555 1555 2.18 LINK MG MG B 402 O HOH B 551 1555 1555 2.19 SITE 1 AC1 6 G B 204 HOH B 544 HOH B 545 HOH B 546 SITE 2 AC1 6 HOH B 547 HOH B 548 SITE 1 AC2 5 G B 209 A B 211 HOH B 549 HOH B 550 SITE 2 AC2 5 HOH B 551 CRYST1 42.521 61.405 155.978 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006411 0.00000