HEADER IMMUNE SYSTEM 06-MAY-02 1LO4 TITLE RETRO-DIELS-ALDERASE CATALYTIC ANTIBODY 9D9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IF KAPPA LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB FRAGMENT; COMPND 5 SYNONYM: CATALYTIC ANTIBODY 9D9; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IG GAMMA 2A HEAVY CHAIN; COMPND 8 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 OTHER_DETAILS: THE ANTIBODIES WERE ISOLATED FROM HYBRIDOMA CELLS AND SOURCE 6 FAB FRAGMENTS WERE GENERATED BY PAPAIN DIGESTION.; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 OTHER_DETAILS: THE ANTIBODIES WERE ISOLATED FROM HYBRIDOMA CELLS AND SOURCE 12 FAB FRAGMENTS WERE GENERATED BY PAPAIN DIGESTION. KEYWDS FAB, CATALYTIC ANTIBODY, RETRO-DEILS-ALDERASE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.HUGOT,J.L.REYMOND,U.BAUMANN REVDAT 4 24-JUL-19 1LO4 1 REMARK REVDAT 3 24-FEB-09 1LO4 1 VERSN REVDAT 2 31-JUL-02 1LO4 1 JRNL REVDAT 1 03-JUL-02 1LO4 0 JRNL AUTH M.HUGOT,N.BENSEL,M.VOGEL,M.T.REYMOND,B.STADLER,J.L.REYMOND, JRNL AUTH 2 U.BAUMANN JRNL TITL A STRUCTURAL BASIS FOR THE ACTIVITY OF RETRO-DIELS-ALDER JRNL TITL 2 CATALYTIC ANTIBODIES: EVIDENCE FOR A CATALYTIC AROMATIC JRNL TITL 3 RESIDUE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 9674 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12093912 JRNL DOI 10.1073/PNAS.142286599 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1053 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1352 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.18000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : -2.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.466 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 9.885 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.885 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3435 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4681 ; 1.906 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 435 ; 7.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 597 ;21.844 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2575 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1532 ; 0.286 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 353 ; 0.150 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.341 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.270 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2173 ; 2.728 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3531 ; 4.008 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1262 ; 5.465 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1150 ; 6.680 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 112 REMARK 3 RESIDUE RANGE : H 1 H 119 REMARK 3 ORIGIN FOR THE GROUP (A): 79.2355 -44.4279 -60.5643 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.1126 REMARK 3 T33: 0.0860 T12: 0.0856 REMARK 3 T13: 0.0439 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 4.1341 L22: 3.3573 REMARK 3 L33: 3.4098 L12: 2.7516 REMARK 3 L13: -1.7311 L23: -1.0216 REMARK 3 S TENSOR REMARK 3 S11: 0.1622 S12: 0.3579 S13: 0.1974 REMARK 3 S21: 0.2748 S22: 0.1686 S23: 0.3046 REMARK 3 S31: -0.3744 S32: -0.2862 S33: -0.3308 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 113 L 217 REMARK 3 RESIDUE RANGE : H 120 H 220 REMARK 3 ORIGIN FOR THE GROUP (A): 96.8031 -51.1445 -89.5422 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.0971 REMARK 3 T33: 0.0832 T12: 0.0337 REMARK 3 T13: 0.0070 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.2495 L22: 3.7050 REMARK 3 L33: 2.3294 L12: 1.4391 REMARK 3 L13: 0.1137 L23: 0.4418 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: 0.1265 S13: -0.1038 REMARK 3 S21: -0.3281 S22: 0.0609 S23: -0.2262 REMARK 3 S31: 0.1819 S32: 0.0576 S33: 0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 7.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.35150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.55150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.17750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.55150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.35150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.17750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU L 88 OE1 GLN L 171 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 65 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 LEU L 111 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP L 115 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP L 189 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP H 10 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP H 61 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP H 89 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP H 212 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 17 -176.97 -69.10 REMARK 500 ILE L 29 52.84 -146.07 REMARK 500 LEU L 52 -62.15 -120.13 REMARK 500 LYS L 55 60.42 38.92 REMARK 500 VAL L 56 -52.70 67.45 REMARK 500 ARG L 82 73.57 55.40 REMARK 500 ASN L 143 62.74 61.92 REMARK 500 ARG L 216 -3.69 -52.08 REMARK 500 ARG H 30 -63.96 -25.97 REMARK 500 ASN H 76 48.93 71.96 REMARK 500 ALA H 91 164.82 179.53 REMARK 500 SER H 100 137.81 -31.58 REMARK 500 PHE H 101 8.42 49.66 REMARK 500 CYS H 133 -36.19 164.26 REMARK 500 ASP H 135 35.31 -77.51 REMARK 500 THR H 136 -1.40 -159.71 REMARK 500 ARG H 218 -147.67 -93.71 REMARK 500 ALA H 219 117.07 67.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR L 7 PRO L 8 -44.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L00 RELATED DB: PDB REMARK 900 CATALYTIC RETRO-DIELS-ALDERASE TRANSITION STATE ANALOGUE COMPLEX REMARK 900 RELATED ID: 1L02 RELATED DB: PDB REMARK 900 RETRO-DIELS-ALDERASE CATALYTIC ANTIBODY REMARK 900 RELATED ID: 1L03 RELATED DB: PDB REMARK 900 RETRO-DIELS-ALDERASE CATALYTIC ANTIBODY REMARK 999 REMARK 999 AT THE TIME OF PROCESSING, THIS SEQUENCE HAS NOT YET REMARK 999 BEEN DEPOSITED IN A SEQUENCE DATABASE. DBREF 1LO4 L 5 217 UNP Q99M37 Q99M37 24 236 DBREF 1LO4 H 1 220 PDB 1LO4 1LO4 1 220 SEQRES 1 L 217 ASP VAL LEU LEU THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 217 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 217 GLN THR ILE VAL HIS THR ASN GLY ASN THR TYR PHE GLU SEQRES 4 L 217 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO HIS LEU LEU SEQRES 5 L 217 ILE TYR LYS VAL SER ASN ARG LEU SER GLY VAL PRO ASP SEQRES 6 L 217 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 217 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY LEU TYR SEQRES 8 L 217 TYR CYS PHE GLN GLY SER HIS SER PRO TRP THR PHE GLY SEQRES 9 L 217 GLY GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 L 217 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 217 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 217 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 217 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 217 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 217 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 217 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 217 PRO ILE VAL LYS SER PHE ASN ARG ASN SEQRES 1 H 220 GLU LEU LYS LEU VAL GLU THR GLY GLY ASP LEU VAL LYS SEQRES 2 H 220 PRO GLY GLY SER LEU THR LEU SER CYS GLU ALA SER GLY SEQRES 3 H 220 PHE THR LEU ARG THR TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 H 220 THR PRO GLN MET ARG LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 220 TYR GLY GLY LEU LEU TYR PHE SER ASP SER VAL LYS GLY SEQRES 6 H 220 ARG PHE THR ILE SER ARG ASP ILE VAL ARG ASN ILE LEU SEQRES 7 H 220 THR LEU GLN MET SER ARG LEU ARG SER GLU ASP THR ALA SEQRES 8 H 220 ILE TYR TYR CYS ALA ARG GLY THR SER PHE VAL ARG TYR SEQRES 9 H 220 PHE ASP VAL TRP GLY ALA GLY THR THR VAL THR VAL SER SEQRES 10 H 220 SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 220 PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU SEQRES 12 H 220 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 220 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 220 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 220 SER SER SER VAL THR VAL THR SER SER THR TRP PRO SER SEQRES 16 H 220 GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 220 THR GLN VAL ASP LYS LYS ILE VAL PRO ARG ALA ALA FORMUL 3 HOH *19(H2 O) HELIX 1 1 GLU L 84 LEU L 88 5 5 HELIX 2 2 SER L 126 SER L 132 1 7 HELIX 3 3 LYS L 188 GLU L 192 1 5 HELIX 4 4 ARG H 86 THR H 90 5 5 HELIX 5 5 SER H 161 SER H 163 5 3 HELIX 6 6 PRO H 205 SER H 208 5 4 SHEET 1 A 4 LEU L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 B 6 SER L 10 SER L 14 0 SHEET 2 B 6 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 B 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 B 6 PHE L 38 GLN L 43 -1 N TYR L 41 O TYR L 92 SHEET 5 B 6 PRO L 49 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 B 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 C 4 SER L 10 SER L 14 0 SHEET 2 C 4 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 C 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 C 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 D 4 THR L 119 PHE L 123 0 SHEET 2 D 4 GLY L 134 PHE L 144 -1 O VAL L 138 N PHE L 123 SHEET 3 D 4 TYR L 178 THR L 187 -1 O TYR L 178 N PHE L 144 SHEET 4 D 4 VAL L 164 TRP L 168 -1 N LEU L 165 O THR L 183 SHEET 1 E 4 SER L 158 ARG L 160 0 SHEET 2 E 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 E 4 SER L 196 THR L 202 -1 O GLU L 200 N LYS L 152 SHEET 4 E 4 ILE L 210 ASN L 215 -1 O LYS L 212 N CYS L 199 SHEET 1 F 4 LYS H 3 THR H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 21 N THR H 7 SHEET 3 F 4 ILE H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 F 4 THR H 68 ASP H 72 -1 N SER H 70 O THR H 79 SHEET 1 G 5 LEU H 57 PHE H 59 0 SHEET 2 G 5 LEU H 45 ILE H 51 -1 N SER H 50 O TYR H 58 SHEET 3 G 5 GLY H 33 GLN H 39 -1 N ARG H 38 O GLU H 46 SHEET 4 G 5 ALA H 91 THR H 99 -1 O TYR H 94 N VAL H 37 SHEET 5 G 5 ARG H 103 TRP H 108 -1 O ASP H 106 N ARG H 97 SHEET 1 H 6 LEU H 57 PHE H 59 0 SHEET 2 H 6 LEU H 45 ILE H 51 -1 N SER H 50 O TYR H 58 SHEET 3 H 6 GLY H 33 GLN H 39 -1 N ARG H 38 O GLU H 46 SHEET 4 H 6 ALA H 91 THR H 99 -1 O TYR H 94 N VAL H 37 SHEET 5 H 6 THR H 112 VAL H 116 -1 O THR H 112 N TYR H 93 SHEET 6 H 6 LEU H 11 VAL H 12 1 N VAL H 12 O THR H 115 SHEET 1 I 4 SER H 125 LEU H 129 0 SHEET 2 I 4 SER H 140 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 I 4 LEU H 179 THR H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 I 4 VAL H 168 THR H 170 -1 N HIS H 169 O SER H 185 SHEET 1 J 4 SER H 125 LEU H 129 0 SHEET 2 J 4 SER H 140 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 J 4 LEU H 179 THR H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 J 4 VAL H 174 GLN H 176 -1 N VAL H 174 O THR H 181 SHEET 1 K 3 THR H 156 TRP H 159 0 SHEET 2 K 3 THR H 199 HIS H 204 -1 O ASN H 201 N THR H 158 SHEET 3 K 3 THR H 209 LYS H 214 -1 O LYS H 213 N CYS H 200 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.05 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.08 SSBOND 3 CYS H 22 CYS H 95 1555 1555 2.04 SSBOND 4 CYS H 145 CYS H 200 1555 1555 2.04 CISPEP 1 SER L 99 PRO L 100 0 -7.06 CISPEP 2 TYR L 145 PRO L 146 0 -0.26 CISPEP 3 PHE H 151 PRO H 152 0 -6.11 CISPEP 4 GLU H 153 PRO H 154 0 -3.50 CISPEP 5 TRP H 193 PRO H 194 0 3.96 CRYST1 48.703 80.355 125.103 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007993 0.00000