HEADER LECTIN 27-JAN-94 1LOG TITLE X-RAY STRUCTURE OF A (ALPHA-MAN(1-3)BETA-MAN(1-4)GLCNAC)-LECTIN TITLE 2 COMPLEX AT 2.1 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEGUME ISOLECTIN I (ALPHA CHAIN); COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LEGUME ISOLECTIN I (BETA CHAIN); COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LATHYRUS OCHRUS; SOURCE 3 ORGANISM_COMMON: YELLOW-FLOWERED PEA; SOURCE 4 ORGANISM_TAXID: 3858; SOURCE 5 ORGAN: SEED; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: LATHYRUS OCHRUS; SOURCE 8 ORGANISM_COMMON: YELLOW-FLOWERED PEA; SOURCE 9 ORGANISM_TAXID: 3858; SOURCE 10 ORGAN: SEED KEYWDS LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.BOURNE,C.CAMBILLAU REVDAT 6 14-FEB-24 1LOG 1 HETSYN REVDAT 5 29-JUL-20 1LOG 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 1LOG 1 VERSN REVDAT 3 24-FEB-09 1LOG 1 VERSN REVDAT 2 01-APR-03 1LOG 1 JRNL REVDAT 1 30-APR-94 1LOG 0 JRNL AUTH Y.BOURNE,P.ROUGE,C.CAMBILLAU JRNL TITL X-RAY STRUCTURE OF A JRNL TITL 2 (ALPHA-MAN(1-3)BETA-MAN(1-4)GLCNAC)-LECTIN COMPLEX AT 2.1-A JRNL TITL 3 RESOLUTION. THE ROLE OF WATER IN SUGAR-LECTIN INTERACTION. JRNL REF J.BIOL.CHEM. V. 265 18161 1990 JRNL REFN ISSN 0021-9258 JRNL PMID 2211692 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.BOURNE,C.ANGUILLE,P.ROUGE,J.-C.FONTECILLA-CAMPS, REMARK 1 AUTH 2 C.CAMBILLAU REMARK 1 TITL CO-CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES REMARK 1 TITL 2 OF LATHYRUS OCHRUS ISOLECTIN I WITH DI-AND TRISACCHARIDES REMARK 1 TITL 3 AND A BIANTENNARY OCTASACCHARIDE REMARK 1 REF J.MOL.BIOL. V. 213 211 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 68.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 181 REMARK 465 GLU B 1 REMARK 465 GLY B 48 REMARK 465 THR B 49 REMARK 465 SER B 50 REMARK 465 SER B 51 REMARK 465 SER B 52 REMARK 465 SER D 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER D 51 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 51 NE2 HIS A 51 CD2 -0.075 REMARK 500 HIS B 43 NE2 HIS B 43 CD2 -0.070 REMARK 500 HIS C 51 NE2 HIS C 51 CD2 -0.078 REMARK 500 HIS D 43 NE2 HIS D 43 CD2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 38 CB - CG - CD ANGL. DEV. = -20.4 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP A 53 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 53 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 128 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 128 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP A 152 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP A 152 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 152 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP B 19 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP B 19 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP B 40 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP B 40 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP C 53 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP C 53 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 TRP C 128 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP C 128 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP C 152 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP C 152 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 VAL C 172 CG1 - CB - CG2 ANGL. DEV. = -11.4 DEGREES REMARK 500 LEU C 177 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 TRP D 19 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP D 19 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG D 21 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG D 21 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG D 21 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TRP D 40 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP D 40 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 THR D 49 N - CA - C ANGL. DEV. = 30.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 95 -143.78 -101.76 REMARK 500 LEU A 101 17.81 52.86 REMARK 500 TRP A 128 -20.22 -146.57 REMARK 500 GLN C 95 -153.08 -99.51 REMARK 500 TRP C 128 -15.12 -145.51 REMARK 500 ALA D 33 155.44 172.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY D 48 THR D 49 -143.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 562 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE2 REMARK 620 2 ASP A 121 OD2 97.3 REMARK 620 3 ASP A 129 OD1 173.9 87.3 REMARK 620 4 HIS A 136 NE2 91.2 85.0 85.3 REMARK 620 5 HOH A 747 O 90.5 93.5 93.1 177.8 REMARK 620 6 HOH A 748 O 85.3 161.7 89.0 76.9 104.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 561 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 121 OD2 REMARK 620 2 ASP A 121 OD1 43.3 REMARK 620 3 PHE A 123 O 96.1 68.7 REMARK 620 4 ASN A 125 OD1 152.2 162.8 96.7 REMARK 620 5 ASP A 129 OD2 74.3 102.9 82.0 83.2 REMARK 620 6 HOH A 745 O 104.1 74.1 95.2 99.1 176.6 REMARK 620 7 HOH A 746 O 65.4 101.3 157.8 95.5 81.1 101.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 572 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 119 OE2 REMARK 620 2 ASP C 121 OD2 100.9 REMARK 620 3 ASP C 129 OD1 174.1 84.2 REMARK 620 4 HIS C 136 NE2 89.1 86.6 88.4 REMARK 620 5 HOH C 764 O 98.5 87.0 84.6 170.9 REMARK 620 6 HOH C 765 O 92.2 159.5 82.1 77.8 106.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 571 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 121 OD1 REMARK 620 2 ASP C 121 OD2 48.3 REMARK 620 3 PHE C 123 O 73.2 105.5 REMARK 620 4 ASN C 125 OD1 162.3 149.2 93.6 REMARK 620 5 ASP C 129 OD2 108.4 76.6 84.9 81.4 REMARK 620 6 HOH C 762 O 74.9 106.4 95.6 95.2 176.6 REMARK 620 7 HOH C 763 O 106.3 71.0 174.6 87.9 90.2 89.4 REMARK 620 N 1 2 3 4 5 6 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ADVISORY NOTICE: REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: LEC1_LATOC REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB ATOM RECORDS REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 LYS 153 ALA A 153 REMARK 999 PHE 41 TYR B 41 REMARK 999 LYS 153 ALA C 153 REMARK 999 PHE 41 TYR D 41 DBREF 1LOG A 1 181 UNP P04122 LECB_LATOC 1 181 DBREF 1LOG B 1 52 UNP P12306 LEC1_LATOC 1 52 DBREF 1LOG C 1 181 UNP P04122 LECB_LATOC 1 181 DBREF 1LOG D 1 52 UNP P12306 LEC1_LATOC 1 52 SEQADV 1LOG ALA A 153 UNP P04122 LYS 153 CONFLICT SEQADV 1LOG TYR B 41 UNP P12306 PHE 41 CONFLICT SEQADV 1LOG ALA C 153 UNP P04122 LYS 153 CONFLICT SEQADV 1LOG TYR D 41 UNP P12306 PHE 41 CONFLICT SEQRES 1 A 181 THR GLU THR THR SER PHE SER ILE THR LYS PHE GLY PRO SEQRES 2 A 181 ASP GLN GLN ASN LEU ILE PHE GLN GLY ASP GLY TYR THR SEQRES 3 A 181 THR LYS GLU ARG LEU THR LEU THR LYS ALA VAL ARG ASN SEQRES 4 A 181 THR VAL GLY ARG ALA LEU TYR SER SER PRO ILE HIS ILE SEQRES 5 A 181 TRP ASP SER LYS THR GLY ASN VAL ALA ASN PHE VAL THR SEQRES 6 A 181 SER PHE THR PHE VAL ILE ASP ALA PRO ASN SER TYR ASN SEQRES 7 A 181 VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL ASP SEQRES 8 A 181 THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL PHE SEQRES 9 A 181 ASN SER LYS ASP TYR ASP LYS THR SER GLN THR VAL ALA SEQRES 10 A 181 VAL GLU PHE ASP THR PHE TYR ASN THR ALA TRP ASP PRO SEQRES 11 A 181 SER ASN GLY ASP ARG HIS ILE GLY ILE ASP VAL ASN SER SEQRES 12 A 181 ILE LYS SER ILE ASN THR LYS SER TRP ALA LEU GLN ASN SEQRES 13 A 181 GLY LYS GLU ALA ASN VAL VAL ILE ALA PHE ASN ALA ALA SEQRES 14 A 181 THR ASN VAL LEU THR VAL SER LEU THR TYR PRO ASN SEQRES 1 B 52 GLU THR SER TYR THR LEU ASN GLU VAL VAL PRO LEU LYS SEQRES 2 B 52 GLU PHE VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 B 52 THR THR GLY ALA GLU PHE ALA ALA HIS GLU VAL LEU SER SEQRES 4 B 52 TRP TYR PHE HIS SER GLU LEU ALA GLY THR SER SER SER SEQRES 1 C 181 THR GLU THR THR SER PHE SER ILE THR LYS PHE GLY PRO SEQRES 2 C 181 ASP GLN GLN ASN LEU ILE PHE GLN GLY ASP GLY TYR THR SEQRES 3 C 181 THR LYS GLU ARG LEU THR LEU THR LYS ALA VAL ARG ASN SEQRES 4 C 181 THR VAL GLY ARG ALA LEU TYR SER SER PRO ILE HIS ILE SEQRES 5 C 181 TRP ASP SER LYS THR GLY ASN VAL ALA ASN PHE VAL THR SEQRES 6 C 181 SER PHE THR PHE VAL ILE ASP ALA PRO ASN SER TYR ASN SEQRES 7 C 181 VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL ASP SEQRES 8 C 181 THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL PHE SEQRES 9 C 181 ASN SER LYS ASP TYR ASP LYS THR SER GLN THR VAL ALA SEQRES 10 C 181 VAL GLU PHE ASP THR PHE TYR ASN THR ALA TRP ASP PRO SEQRES 11 C 181 SER ASN GLY ASP ARG HIS ILE GLY ILE ASP VAL ASN SER SEQRES 12 C 181 ILE LYS SER ILE ASN THR LYS SER TRP ALA LEU GLN ASN SEQRES 13 C 181 GLY LYS GLU ALA ASN VAL VAL ILE ALA PHE ASN ALA ALA SEQRES 14 C 181 THR ASN VAL LEU THR VAL SER LEU THR TYR PRO ASN SEQRES 1 D 52 GLU THR SER TYR THR LEU ASN GLU VAL VAL PRO LEU LYS SEQRES 2 D 52 GLU PHE VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 D 52 THR THR GLY ALA GLU PHE ALA ALA HIS GLU VAL LEU SER SEQRES 4 D 52 TRP TYR PHE HIS SER GLU LEU ALA GLY THR SER SER SER HET NAG E 1 15 HET BMA E 2 11 HET MAN E 3 11 HET NAG F 1 15 HET BMA F 2 11 HET MAN F 3 11 HET CA A 561 1 HET MN A 562 1 HET CA C 571 1 HET MN C 572 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 NAG 2(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 2(C6 H12 O6) FORMUL 7 CA 2(CA 2+) FORMUL 8 MN 2(MN 2+) FORMUL 11 HOH *338(H2 O) HELIX 1 1 GLY A 97 LEU A 101 5 5 HELIX 2 2 ASP A 110 GLN A 114 5 5 HELIX 3 3 PRO B 11 PHE B 15 5 5 HELIX 4 4 GLY C 97 LEU C 101 5 5 HELIX 5 5 PRO D 11 PHE D 15 5 5 SHEET 1 A 7 ASN A 148 SER A 151 0 SHEET 2 A 7 HIS A 136 VAL A 141 -1 O ILE A 137 N LYS A 150 SHEET 3 A 7 VAL A 116 ASP A 121 -1 O ALA A 117 N ASP A 140 SHEET 4 A 7 GLY A 82 PRO A 89 -1 O PHE A 83 N PHE A 120 SHEET 5 A 7 TRP B 19 THR B 27 -1 N ARG B 21 O ALA A 88 SHEET 6 A 7 VAL A 41 TYR A 46 -1 N GLY A 42 O ALA B 26 SHEET 7 A 7 LEU A 18 GLY A 22 -1 N ILE A 19 O LEU A 45 SHEET 1 B 6 ASN A 148 SER A 151 0 SHEET 2 B 6 HIS A 136 VAL A 141 -1 O ILE A 137 N LYS A 150 SHEET 3 B 6 VAL A 116 ASP A 121 -1 O ALA A 117 N ASP A 140 SHEET 4 B 6 GLY A 82 PRO A 89 -1 O PHE A 83 N PHE A 120 SHEET 5 B 6 TRP B 19 THR B 27 -1 N ARG B 21 O ALA A 88 SHEET 6 B 6 ILE A 50 HIS A 51 -1 N ILE A 50 O VAL B 20 SHEET 1 C 7 ASN C 148 SER C 151 0 SHEET 2 C 7 HIS C 136 VAL C 141 -1 N ILE C 137 O LYS C 150 SHEET 3 C 7 VAL C 116 ASP C 121 -1 O ALA C 117 N ASP C 140 SHEET 4 C 7 GLY C 82 PRO C 89 -1 O PHE C 83 N PHE C 120 SHEET 5 C 7 TRP D 19 THR D 27 -1 N ARG D 21 O ALA C 88 SHEET 6 C 7 VAL C 41 TYR C 46 -1 N GLY C 42 O ALA D 26 SHEET 7 C 7 LEU C 18 GLY C 22 -1 O ILE C 19 N LEU C 45 SHEET 1 D 6 ASN C 148 SER C 151 0 SHEET 2 D 6 HIS C 136 VAL C 141 -1 N ILE C 137 O LYS C 150 SHEET 3 D 6 VAL C 116 ASP C 121 -1 O ALA C 117 N ASP C 140 SHEET 4 D 6 GLY C 82 PRO C 89 -1 O PHE C 83 N PHE C 120 SHEET 5 D 6 TRP D 19 THR D 27 -1 N ARG D 21 O ALA C 88 SHEET 6 D 6 ILE C 50 HIS C 51 -1 N ILE C 50 O VAL D 20 LINK O4 NAG E 1 C1 BMA E 2 1555 1555 1.42 LINK O3 BMA E 2 C1 MAN E 3 1555 1555 1.41 LINK O4 NAG F 1 C1 BMA F 2 1555 1555 1.44 LINK O3 BMA F 2 C1 MAN F 3 1555 1555 1.40 LINK OE2 GLU A 119 MN MN A 562 1555 1555 2.42 LINK OD2 ASP A 121 CA CA A 561 1555 1555 3.02 LINK OD1 ASP A 121 CA CA A 561 1555 1555 2.62 LINK OD2 ASP A 121 MN MN A 562 1555 1555 2.07 LINK O PHE A 123 CA CA A 561 1555 1555 2.10 LINK OD1 ASN A 125 CA CA A 561 1555 1555 1.79 LINK OD2 ASP A 129 CA CA A 561 1555 1555 2.49 LINK OD1 ASP A 129 MN MN A 562 1555 1555 2.21 LINK NE2 HIS A 136 MN MN A 562 1555 1555 2.66 LINK CA CA A 561 O HOH A 745 1555 1555 1.57 LINK CA CA A 561 O HOH A 746 1555 1555 1.55 LINK MN MN A 562 O HOH A 747 1555 1555 1.55 LINK MN MN A 562 O HOH A 748 1555 1555 1.51 LINK OE2 GLU C 119 MN MN C 572 1555 1555 2.19 LINK OD1 ASP C 121 CA CA C 571 1555 1555 2.45 LINK OD2 ASP C 121 CA CA C 571 1555 1555 2.70 LINK OD2 ASP C 121 MN MN C 572 1555 1555 2.20 LINK O PHE C 123 CA CA C 571 1555 1555 2.23 LINK OD1 ASN C 125 CA CA C 571 1555 1555 1.80 LINK OD2 ASP C 129 CA CA C 571 1555 1555 2.48 LINK OD1 ASP C 129 MN MN C 572 1555 1555 2.37 LINK NE2 HIS C 136 MN MN C 572 1555 1555 2.61 LINK CA CA C 571 O HOH C 762 1555 1555 1.59 LINK CA CA C 571 O HOH C 763 1555 1555 2.10 LINK MN MN C 572 O HOH C 764 1555 1555 1.52 LINK MN MN C 572 O HOH C 765 1555 1555 1.50 CISPEP 1 ALA A 80 ASP A 81 0 -8.24 CISPEP 2 ALA C 80 ASP C 81 0 -15.00 CRYST1 137.100 63.300 54.600 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007294 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018315 0.00000