data_1LPL # _entry.id 1LPL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LPL RCSB RCSB016163 WWPDB D_1000016163 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id F53F4.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LPL _pdbx_database_status.recvd_initial_deposition_date 2002-05-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, S.' 1 'Finley, J.' 2 'Liu, Z.-J.' 3 'Qiu, S.H.' 4 'Luan, C.H.' 5 'Carson, M.' 6 'Tsao, J.' 7 'Johnson, D.' 8 'Lin, G.' 9 'Zhao, J.' 10 'Thomas, W.' 11 'Nagy, L.A.' 12 'Sha, B.' 13 'DeLucas, L.J.' 14 'Wang, B.-C.' 15 'Luo, M.' 16 'Southeast Collaboratory for Structural Genomics (SECSG)' 17 # _citation.id primary _citation.title ;Crystal Structure of the Cytoskeleton-associated Protein Glycine-rich (CAP-Gly) Domain ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 277 _citation.page_first 48596 _citation.page_last 48601 _citation.year 2002 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12221106 _citation.pdbx_database_id_DOI 10.1074/jbc.M208512200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Li, S.' 1 primary 'Finley, J.' 2 primary 'Liu, Z.-J.' 3 primary 'Qiu, S.H.' 4 primary 'Luan, C.H.' 5 primary 'Carson, M.' 6 primary 'Tsao, J.' 7 primary 'Johnson, D.' 8 primary 'Lin, G.' 9 primary 'Zhao, J.' 10 primary 'Thomas, W.' 11 primary 'Nagy, L.A.' 12 primary 'Sha, B.' 13 primary 'DeLucas, L.J.' 14 primary 'Wang, B.-C.' 15 primary 'Luo, M.' 16 # _cell.entry_id 1LPL _cell.length_a 64.156 _cell.length_b 64.156 _cell.length_c 101.946 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LPL _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical 25.4 kDa protein F53F4.3 in chromosome V' 10358.670 1 ? ? 'CAP-Gly domain' ? 2 water nat water 18.015 86 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPV DVKVGDFPELSIDEI ; _entity_poly.pdbx_seq_one_letter_code_can ;SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPV DVKVGDFPELSIDEI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier F53F4.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 LYS n 1 4 LEU n 1 5 ASN n 1 6 GLU n 1 7 GLU n 1 8 ALA n 1 9 ALA n 1 10 LYS n 1 11 ASN n 1 12 ILE n 1 13 MET n 1 14 VAL n 1 15 GLY n 1 16 ASN n 1 17 ARG n 1 18 CYS n 1 19 GLU n 1 20 VAL n 1 21 THR n 1 22 VAL n 1 23 GLY n 1 24 ALA n 1 25 GLN n 1 26 MET n 1 27 ALA n 1 28 ARG n 1 29 ARG n 1 30 GLY n 1 31 GLU n 1 32 VAL n 1 33 ALA n 1 34 TYR n 1 35 VAL n 1 36 GLY n 1 37 ALA n 1 38 THR n 1 39 LYS n 1 40 PHE n 1 41 LYS n 1 42 GLU n 1 43 GLY n 1 44 VAL n 1 45 TRP n 1 46 VAL n 1 47 GLY n 1 48 VAL n 1 49 LYS n 1 50 TYR n 1 51 ASP n 1 52 GLU n 1 53 PRO n 1 54 VAL n 1 55 GLY n 1 56 LYS n 1 57 ASN n 1 58 ASP n 1 59 GLY n 1 60 SER n 1 61 VAL n 1 62 ALA n 1 63 GLY n 1 64 VAL n 1 65 ARG n 1 66 TYR n 1 67 PHE n 1 68 ASP n 1 69 CYS n 1 70 ASP n 1 71 PRO n 1 72 LYS n 1 73 TYR n 1 74 GLY n 1 75 GLY n 1 76 PHE n 1 77 VAL n 1 78 ARG n 1 79 PRO n 1 80 VAL n 1 81 ASP n 1 82 VAL n 1 83 LYS n 1 84 VAL n 1 85 GLY n 1 86 ASP n 1 87 PHE n 1 88 PRO n 1 89 GLU n 1 90 LEU n 1 91 SER n 1 92 ILE n 1 93 ASP n 1 94 GLU n 1 95 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Caenorhabditis _entity_src_gen.pdbx_gene_src_gene F53F4.3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caenorhabditis elegans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6239 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'pDEST 17.1' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YXHK_CAEEL _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPV DVKVGDFPELSIDEI ; _struct_ref.pdbx_align_begin 135 _struct_ref.pdbx_db_accession Q20728 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LPL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 95 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q20728 _struct_ref_seq.db_align_beg 135 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 229 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 135 _struct_ref_seq.pdbx_auth_seq_align_end 229 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LPL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.91 _exptl_crystal.density_Matthews 2.92 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'Reservoir solution contained 1.8 M ammonium sulphate and 0.1 M MES buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-06-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.74 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.74 # _reflns.entry_id 1LPL _reflns.observed_criterion_sigma_I 0.001 _reflns.observed_criterion_sigma_F 0.001 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.77 _reflns.number_obs 12627 _reflns.number_all 12627 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 23.3 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.77 _reflns_shell.d_res_low 1.88 _reflns_shell.percent_possible_all 91.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1LPL _refine.ls_number_reflns_obs 12225 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.001000 _refine.ls_d_res_low 30.60 _refine.ls_d_res_high 1.77 _refine.ls_percent_reflns_obs 96.3 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22 _refine.ls_R_factor_R_free 0.297 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 627 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 29.9 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1LPL _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.24 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 727 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 813 _refine_hist.d_res_high 1.77 _refine_hist.d_res_low 30.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 27.4 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.83 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.91 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 3.16 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 3.52 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 5.80 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.77 _refine_ls_shell.d_res_low 1.88 _refine_ls_shell.number_reflns_R_work 1787 _refine_ls_shell.R_factor_R_work 0.365 _refine_ls_shell.percent_reflns_obs 91.9 _refine_ls_shell.R_factor_R_free 0.351 _refine_ls_shell.R_factor_R_free_error 0.034 _refine_ls_shell.percent_reflns_R_free 5.5 _refine_ls_shell.number_reflns_R_free 104 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 1LPL _struct.title 'Structural Genomics of Caenorhabditis elegans: CAP-Gly domain of F53F4.3' _struct.pdbx_descriptor 'Hypothetical 25.4 kDa protein F53F4.3 in chromosome V' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LPL _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI, Protein Structure Initiative, Southeast Collaboratory for Structural Genomics, SECSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 2 ? LYS A 10 ? ASP A 136 LYS A 144 1 ? 9 HELX_P HELX_P2 2 ARG A 78 ? VAL A 80 ? ARG A 212 VAL A 214 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 74 ? VAL A 77 ? GLY A 208 VAL A 211 A 2 TRP A 45 ? TYR A 50 ? TRP A 179 TYR A 184 A 3 ARG A 28 ? GLY A 36 ? ARG A 162 GLY A 170 A 4 ARG A 17 ? VAL A 20 ? ARG A 151 VAL A 154 A 5 VAL A 82 ? VAL A 84 ? VAL A 216 VAL A 218 B 1 SER A 60 ? VAL A 61 ? SER A 194 VAL A 195 B 2 VAL A 64 ? ARG A 65 ? VAL A 198 ARG A 199 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 75 ? O GLY A 209 N VAL A 48 ? N VAL A 182 A 2 3 O LYS A 49 ? O LYS A 183 N GLU A 31 ? N GLU A 165 A 3 4 O ARG A 28 ? O ARG A 162 N VAL A 20 ? N VAL A 154 A 4 5 N GLU A 19 ? N GLU A 153 O LYS A 83 ? O LYS A 217 B 1 2 N VAL A 61 ? N VAL A 195 O VAL A 64 ? O VAL A 198 # _database_PDB_matrix.entry_id 1LPL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LPL _atom_sites.fract_transf_matrix[1][1] 0.015587 _atom_sites.fract_transf_matrix[1][2] 0.008999 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017998 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009809 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 135 135 SER SER A . n A 1 2 ASP 2 136 136 ASP ASP A . n A 1 3 LYS 3 137 137 LYS LYS A . n A 1 4 LEU 4 138 138 LEU LEU A . n A 1 5 ASN 5 139 139 ASN ASN A . n A 1 6 GLU 6 140 140 GLU GLU A . n A 1 7 GLU 7 141 141 GLU GLU A . n A 1 8 ALA 8 142 142 ALA ALA A . n A 1 9 ALA 9 143 143 ALA ALA A . n A 1 10 LYS 10 144 144 LYS LYS A . n A 1 11 ASN 11 145 145 ASN ASN A . n A 1 12 ILE 12 146 146 ILE ILE A . n A 1 13 MET 13 147 147 MET MET A . n A 1 14 VAL 14 148 148 VAL VAL A . n A 1 15 GLY 15 149 149 GLY GLY A . n A 1 16 ASN 16 150 150 ASN ASN A . n A 1 17 ARG 17 151 151 ARG ARG A . n A 1 18 CYS 18 152 152 CYS CYS A . n A 1 19 GLU 19 153 153 GLU GLU A . n A 1 20 VAL 20 154 154 VAL VAL A . n A 1 21 THR 21 155 155 THR THR A . n A 1 22 VAL 22 156 156 VAL VAL A . n A 1 23 GLY 23 157 157 GLY GLY A . n A 1 24 ALA 24 158 158 ALA ALA A . n A 1 25 GLN 25 159 159 GLN GLN A . n A 1 26 MET 26 160 160 MET MET A . n A 1 27 ALA 27 161 161 ALA ALA A . n A 1 28 ARG 28 162 162 ARG ARG A . n A 1 29 ARG 29 163 163 ARG ARG A . n A 1 30 GLY 30 164 164 GLY GLY A . n A 1 31 GLU 31 165 165 GLU GLU A . n A 1 32 VAL 32 166 166 VAL VAL A . n A 1 33 ALA 33 167 167 ALA ALA A . n A 1 34 TYR 34 168 168 TYR TYR A . n A 1 35 VAL 35 169 169 VAL VAL A . n A 1 36 GLY 36 170 170 GLY GLY A . n A 1 37 ALA 37 171 171 ALA ALA A . n A 1 38 THR 38 172 172 THR THR A . n A 1 39 LYS 39 173 173 LYS LYS A . n A 1 40 PHE 40 174 174 PHE PHE A . n A 1 41 LYS 41 175 175 LYS LYS A . n A 1 42 GLU 42 176 176 GLU GLU A . n A 1 43 GLY 43 177 177 GLY GLY A . n A 1 44 VAL 44 178 178 VAL VAL A . n A 1 45 TRP 45 179 179 TRP TRP A . n A 1 46 VAL 46 180 180 VAL VAL A . n A 1 47 GLY 47 181 181 GLY GLY A . n A 1 48 VAL 48 182 182 VAL VAL A . n A 1 49 LYS 49 183 183 LYS LYS A . n A 1 50 TYR 50 184 184 TYR TYR A . n A 1 51 ASP 51 185 185 ASP ASP A . n A 1 52 GLU 52 186 186 GLU GLU A . n A 1 53 PRO 53 187 187 PRO PRO A . n A 1 54 VAL 54 188 188 VAL VAL A . n A 1 55 GLY 55 189 189 GLY GLY A . n A 1 56 LYS 56 190 190 LYS LYS A . n A 1 57 ASN 57 191 191 ASN ASN A . n A 1 58 ASP 58 192 192 ASP ASP A . n A 1 59 GLY 59 193 193 GLY GLY A . n A 1 60 SER 60 194 194 SER SER A . n A 1 61 VAL 61 195 195 VAL VAL A . n A 1 62 ALA 62 196 196 ALA ALA A . n A 1 63 GLY 63 197 197 GLY GLY A . n A 1 64 VAL 64 198 198 VAL VAL A . n A 1 65 ARG 65 199 199 ARG ARG A . n A 1 66 TYR 66 200 200 TYR TYR A . n A 1 67 PHE 67 201 201 PHE PHE A . n A 1 68 ASP 68 202 202 ASP ASP A . n A 1 69 CYS 69 203 203 CYS CYS A . n A 1 70 ASP 70 204 204 ASP ASP A . n A 1 71 PRO 71 205 205 PRO PRO A . n A 1 72 LYS 72 206 206 LYS LYS A . n A 1 73 TYR 73 207 207 TYR TYR A . n A 1 74 GLY 74 208 208 GLY GLY A . n A 1 75 GLY 75 209 209 GLY GLY A . n A 1 76 PHE 76 210 210 PHE PHE A . n A 1 77 VAL 77 211 211 VAL VAL A . n A 1 78 ARG 78 212 212 ARG ARG A . n A 1 79 PRO 79 213 213 PRO PRO A . n A 1 80 VAL 80 214 214 VAL VAL A . n A 1 81 ASP 81 215 215 ASP ASP A . n A 1 82 VAL 82 216 216 VAL VAL A . n A 1 83 LYS 83 217 217 LYS LYS A . n A 1 84 VAL 84 218 218 VAL VAL A . n A 1 85 GLY 85 219 219 GLY GLY A . n A 1 86 ASP 86 220 220 ASP ASP A . n A 1 87 PHE 87 221 221 PHE PHE A . n A 1 88 PRO 88 222 222 PRO PRO A . n A 1 89 GLU 89 223 223 GLU GLU A . n A 1 90 LEU 90 224 224 LEU LEU A . n A 1 91 SER 91 225 225 SER SER A . n A 1 92 ILE 92 226 226 ILE ILE A . n A 1 93 ASP 93 227 227 ASP ASP A . n A 1 94 GLU 94 228 228 GLU GLU A . n A 1 95 ILE 95 229 229 ILE ILE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Southeast Collaboratory for Structural Genomics' _pdbx_SG_project.initial_of_center SECSG # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-22 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 HKL-2000 'data reduction' . ? 2 ISAS2001 'model building' . ? 3 X-PLOR refinement 3.851 ? 4 HKL-2000 'data scaling' . ? 5 ISAS phasing 'V. 2001' ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 572 ? ? O A HOH 585 ? ? 1.67 2 1 O A HOH 544 ? ? O A HOH 572 ? ? 1.71 3 1 O A HOH 544 ? ? O A HOH 585 ? ? 2.14 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 159 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -29.47 _pdbx_validate_torsion.psi 150.59 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 501 501 HOH HOH A . B 2 HOH 2 502 502 HOH HOH A . B 2 HOH 3 503 503 HOH HOH A . B 2 HOH 4 504 504 HOH HOH A . B 2 HOH 5 505 505 HOH HOH A . B 2 HOH 6 506 506 HOH HOH A . B 2 HOH 7 507 507 HOH HOH A . B 2 HOH 8 508 508 HOH HOH A . B 2 HOH 9 509 509 HOH HOH A . B 2 HOH 10 510 510 HOH HOH A . B 2 HOH 11 511 511 HOH HOH A . B 2 HOH 12 512 512 HOH HOH A . B 2 HOH 13 513 513 HOH HOH A . B 2 HOH 14 514 514 HOH HOH A . B 2 HOH 15 515 515 HOH HOH A . B 2 HOH 16 516 516 HOH HOH A . B 2 HOH 17 517 517 HOH HOH A . B 2 HOH 18 518 518 HOH HOH A . B 2 HOH 19 519 519 HOH HOH A . B 2 HOH 20 520 520 HOH HOH A . B 2 HOH 21 521 521 HOH HOH A . B 2 HOH 22 522 522 HOH HOH A . B 2 HOH 23 523 523 HOH HOH A . B 2 HOH 24 524 524 HOH HOH A . B 2 HOH 25 525 525 HOH HOH A . B 2 HOH 26 526 526 HOH HOH A . B 2 HOH 27 527 527 HOH HOH A . B 2 HOH 28 528 528 HOH HOH A . B 2 HOH 29 529 529 HOH HOH A . B 2 HOH 30 530 530 HOH HOH A . B 2 HOH 31 531 531 HOH HOH A . B 2 HOH 32 532 532 HOH HOH A . B 2 HOH 33 533 533 HOH HOH A . B 2 HOH 34 534 534 HOH HOH A . B 2 HOH 35 535 535 HOH HOH A . B 2 HOH 36 536 536 HOH HOH A . B 2 HOH 37 537 537 HOH HOH A . B 2 HOH 38 538 538 HOH HOH A . B 2 HOH 39 539 539 HOH HOH A . B 2 HOH 40 540 540 HOH HOH A . B 2 HOH 41 541 541 HOH HOH A . B 2 HOH 42 542 542 HOH HOH A . B 2 HOH 43 543 543 HOH HOH A . B 2 HOH 44 544 544 HOH HOH A . B 2 HOH 45 545 545 HOH HOH A . B 2 HOH 46 546 546 HOH HOH A . B 2 HOH 47 547 547 HOH HOH A . B 2 HOH 48 548 548 HOH HOH A . B 2 HOH 49 549 549 HOH HOH A . B 2 HOH 50 550 550 HOH HOH A . B 2 HOH 51 551 551 HOH HOH A . B 2 HOH 52 552 552 HOH HOH A . B 2 HOH 53 553 553 HOH HOH A . B 2 HOH 54 554 554 HOH HOH A . B 2 HOH 55 555 555 HOH HOH A . B 2 HOH 56 556 556 HOH HOH A . B 2 HOH 57 557 557 HOH HOH A . B 2 HOH 58 558 558 HOH HOH A . B 2 HOH 59 559 559 HOH HOH A . B 2 HOH 60 560 560 HOH HOH A . B 2 HOH 61 561 561 HOH HOH A . B 2 HOH 62 562 562 HOH HOH A . B 2 HOH 63 563 563 HOH HOH A . B 2 HOH 64 564 564 HOH HOH A . B 2 HOH 65 565 565 HOH HOH A . B 2 HOH 66 566 566 HOH HOH A . B 2 HOH 67 567 567 HOH HOH A . B 2 HOH 68 568 568 HOH HOH A . B 2 HOH 69 569 569 HOH HOH A . B 2 HOH 70 570 570 HOH HOH A . B 2 HOH 71 571 571 HOH HOH A . B 2 HOH 72 572 572 HOH HOH A . B 2 HOH 73 573 573 HOH HOH A . B 2 HOH 74 574 574 HOH HOH A . B 2 HOH 75 575 575 HOH HOH A . B 2 HOH 76 576 576 HOH HOH A . B 2 HOH 77 577 577 HOH HOH A . B 2 HOH 78 578 578 HOH HOH A . B 2 HOH 79 579 579 HOH HOH A . B 2 HOH 80 581 581 HOH HOH A . B 2 HOH 81 582 582 HOH HOH A . B 2 HOH 82 583 583 HOH HOH A . B 2 HOH 83 584 584 HOH HOH A . B 2 HOH 84 585 585 HOH HOH A . B 2 HOH 85 586 586 HOH HOH A . B 2 HOH 86 587 587 HOH HOH A . #