HEADER HYDROLASE/HYDROLASE INHIBITOR 10-MAY-02 1LQG TITLE ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA TITLE 2 GLYCOSYLASE INHIBITOR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDG; URACIL-DNA-GLYCOSYLASE; COMPND 5 EC: 3.2.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: URACIL-DNA GLYCOSYLASE INHIBITOR; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PBS2; SOURCE 8 ORGANISM_TAXID: 10684; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLASE, INHIBITOR, DNA REPAIR, BASE EXCISION, COMPLEX KEYWDS 2 (HYDROLASE-INHIBITOR), HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.SAIKRISHNAN,M.B.SAGAR,R.RAVISHANKAR,S.ROY,K.PURNAPATRE,P.HANDA, AUTHOR 2 U.VARSHNEY,M.VIJAYAN REVDAT 4 14-FEB-24 1LQG 1 SEQADV REVDAT 3 24-FEB-09 1LQG 1 VERSN REVDAT 2 22-NOV-02 1LQG 1 SOURCE REMARK REVDAT 1 10-NOV-02 1LQG 0 JRNL AUTH K.SAIKRISHNAN,M.BIDYA SAGAR,R.RAVISHANKAR,S.ROY, JRNL AUTH 2 K.PURNAPATRE,P.HANDA,U.VARSHNEY,M.VIJAYAN JRNL TITL DOMAIN CLOSURE AND ACTION OF URACIL DNA GLYCOSYLASE (UDG): JRNL TITL 2 STRUCTURES OF NEW CRYSTAL FORMS CONTAINING THE ESCHERICHIA JRNL TITL 3 COLI ENZYME AND A COMPARATIVE STUDY OF THE KNOWN STRUCTURES JRNL TITL 4 INVOLVING UDG. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 1269 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 12136137 JRNL DOI 10.1107/S0907444902009599 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.RAVISHANKAR,M.B.SAGAR,S.ROY,K.PURNAPATRE,P.HANDA, REMARK 1 AUTH 2 U.VARSHNEY,M.VIJAYAN REMARK 1 TITL X-RAY ANALYSIS OF A COMPLEX OF ESCHERICHIA COLI URACIL DNA REMARK 1 TITL 2 GLYCOSYLASE (ECUDG) WITH A PROTEINACEOUS INHIBITOR. THE REMARK 1 TITL 3 STRUCTURE ELUCIDATION OF A PROKARYOTIC UDG REMARK 1 REF NUCLEIC ACIDS RES. V. 26 4880 1998 REMARK 1 REFN ISSN 0305-1048 REMARK 1 DOI 10.1093/NAR/26.21.4880 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.ROY,K.PURNAPATRE,P.HANDA,M.BOYANAPALLI,U.VARSHNEY REMARK 1 TITL USE OF A COUPLED TRANSCRIPTIONAL SYSTEM FOR CONSISTENT REMARK 1 TITL 2 OVEREXPRESSION AND PURIFICATION OF UDG-UGI COMPLEX AND UGI REMARK 1 TITL 3 FROM ESCHERICHIA COLI REMARK 1 REF PROTEIN EXPR.PURIF. V. 13 155 1998 REMARK 1 REFN ISSN 1046-5928 REMARK 1 DOI 10.1006/PREP.1998.0878 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.D.PUTNAM,M.J.N.SHROYER,A.J.LUNDQUIST,C.D.MOL,A.S.ARVAI, REMARK 1 AUTH 2 D.W.MOSBAUGH,J.A.TAINER REMARK 1 TITL PROTEIN MIMICRY OF DNA FROM CRYSTAL STRUCTURES OF THE REMARK 1 TITL 2 URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN AND ITS COMPLEX REMARK 1 TITL 3 WITH ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE. REMARK 1 REF J.MOL.BIOL. V. 287 331 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1999.2605 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 14095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 969 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2052 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM11.WAT REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH11.WAT REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1LQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1EUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS-HCL, 10% PEG 1250, PH 7.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP AT 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.58200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.88800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.95100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.88800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.58200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.95100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 25.58200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.90200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 70.88800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 229 REMARK 465 MET B 1 REMARK 465 ALA B 226 REMARK 465 GLU B 227 REMARK 465 SER B 228 REMARK 465 GLU B 229 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASN C 3 REMARK 465 LEU C 4 REMARK 465 SER C 5 REMARK 465 ASP C 6 REMARK 465 ILE C 7 REMARK 465 ILE C 8 REMARK 465 GLU C 9 REMARK 465 LYS C 10 REMARK 465 GLU C 11 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASN D 3 REMARK 465 LEU D 4 REMARK 465 SER D 5 REMARK 465 ASP D 6 REMARK 465 ILE D 7 REMARK 465 ILE D 8 REMARK 465 GLU D 9 REMARK 465 LYS D 10 REMARK 465 GLU D 11 REMARK 465 THR D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 3 CB CG OD1 ND2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 VAL A 10 CB CG1 CG2 REMARK 470 SER A 33 OG REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ASN A 107 CG OD1 ND2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 226 CB REMARK 470 GLU A 227 CB CG CD OE1 OE2 REMARK 470 THR B 6 OG1 CG2 REMARK 470 VAL B 10 CG1 CG2 REMARK 470 GLN B 16 CG CD OE1 NE2 REMARK 470 LYS B 170 CB CG CD CE NZ REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 201 CG OD1 ND2 REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 470 GLN B 212 CG CD OE1 NE2 REMARK 470 THR C 12 OG1 CG2 REMARK 470 SER C 50 OG REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 GLU D 38 CG CD OE1 OE2 REMARK 470 GLU D 49 CG CD OE1 OE2 REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 470 GLU D 78 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 157 NH2 ARG A 213 2.14 REMARK 500 OXT LEU C 84 O HOH C 94 2.18 REMARK 500 OE2 GLU A 95 O CYS A 200 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 38 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 TYR B 38 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 PRO B 101 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO B 101 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 4 86.48 14.63 REMARK 500 HIS A 8 -5.52 -145.09 REMARK 500 VAL A 10 -35.40 66.57 REMARK 500 LEU A 11 4.45 -61.04 REMARK 500 GLU A 14 30.33 -75.72 REMARK 500 LYS A 15 -6.70 -144.27 REMARK 500 TYR A 38 -71.05 -93.03 REMARK 500 VAL A 44 -39.16 -31.70 REMARK 500 VAL A 56 109.07 -59.56 REMARK 500 GLN A 63 -96.05 -84.02 REMARK 500 GLN A 71 -75.60 -78.52 REMARK 500 HIS A 73 27.13 -141.09 REMARK 500 PHE A 77 -40.28 61.60 REMARK 500 PRO A 81 -19.57 -35.57 REMARK 500 PHE A 103 170.24 -45.17 REMARK 500 THR A 104 145.10 179.99 REMARK 500 PRO A 106 -137.86 -66.08 REMARK 500 ASN A 107 24.70 -155.60 REMARK 500 LEU A 121 73.51 -103.50 REMARK 500 ALA A 137 22.86 -71.88 REMARK 500 SER A 138 27.06 -145.12 REMARK 500 LYS A 170 -131.27 37.72 REMARK 500 LYS A 171 -112.02 45.21 REMARK 500 ALA A 173 78.88 -170.65 REMARK 500 PRO A 190 -37.14 -39.43 REMARK 500 SER A 192 -4.65 -143.29 REMARK 500 ASN A 201 40.03 -107.14 REMARK 500 PRO A 225 -114.68 -95.71 REMARK 500 ALA A 226 -154.30 121.61 REMARK 500 GLU A 227 122.19 158.08 REMARK 500 GLU B 4 -105.28 128.83 REMARK 500 LEU B 5 59.09 156.57 REMARK 500 THR B 6 -110.65 -59.99 REMARK 500 TRP B 7 18.21 -152.50 REMARK 500 VAL B 10 -30.10 61.16 REMARK 500 LEU B 11 -8.30 -58.63 REMARK 500 GLU B 13 -41.70 -177.09 REMARK 500 TYR B 38 -89.49 -75.60 REMARK 500 VAL B 56 106.46 -58.10 REMARK 500 GLN B 63 -89.46 -92.90 REMARK 500 HIS B 73 27.41 -144.85 REMARK 500 PHE B 77 -35.65 56.06 REMARK 500 PRO B 81 -23.98 -36.80 REMARK 500 ILE B 85 109.05 -59.58 REMARK 500 PRO B 101 24.20 -47.14 REMARK 500 THR B 104 -94.87 -111.08 REMARK 500 ARG B 105 124.32 168.93 REMARK 500 HIS B 108 150.09 174.43 REMARK 500 HIS B 134 15.24 59.32 REMARK 500 ALA B 137 20.38 -77.94 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 38 0.07 SIDE CHAIN REMARK 500 TYR B 38 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EUI RELATED DB: PDB REMARK 900 E.COLI UDG-UGI COMPLEX REMARK 900 RELATED ID: 1LQJ RELATED DB: PDB REMARK 900 RELATED ID: 1LQM RELATED DB: PDB DBREF 1LQG A 2 229 UNP P12295 UNG_ECOLI 1 228 DBREF 1LQG B 2 229 UNP P12295 UNG_ECOLI 1 228 DBREF 1LQG C 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1LQG D 1 84 UNP P14739 UNGI_BPPB2 1 84 SEQADV 1LQG MET A 1 UNP P12295 CLONING ARTIFACT SEQADV 1LQG MET B 1 UNP P12295 CLONING ARTIFACT SEQRES 1 A 229 MET ALA ASN GLU LEU THR TRP HIS ASP VAL LEU ALA GLU SEQRES 2 A 229 GLU LYS GLN GLN PRO TYR PHE LEU ASN THR LEU GLN THR SEQRES 3 A 229 VAL ALA SER GLU ARG GLN SER GLY VAL THR ILE TYR PRO SEQRES 4 A 229 PRO GLN LYS ASP VAL PHE ASN ALA PHE ARG PHE THR GLU SEQRES 5 A 229 LEU GLY ASP VAL LYS VAL VAL ILE LEU GLY GLN ASP PRO SEQRES 6 A 229 TYR HIS GLY PRO GLY GLN ALA HIS GLY LEU ALA PHE SER SEQRES 7 A 229 VAL ARG PRO GLY ILE ALA ILE PRO PRO SER LEU LEU ASN SEQRES 8 A 229 MET TYR LYS GLU LEU GLU ASN THR ILE PRO GLY PHE THR SEQRES 9 A 229 ARG PRO ASN HIS GLY TYR LEU GLU SER TRP ALA ARG GLN SEQRES 10 A 229 GLY VAL LEU LEU LEU ASN THR VAL LEU THR VAL ARG ALA SEQRES 11 A 229 GLY GLN ALA HIS SER HIS ALA SER LEU GLY TRP GLU THR SEQRES 12 A 229 PHE THR ASP LYS VAL ILE SER LEU ILE ASN GLN HIS ARG SEQRES 13 A 229 GLU GLY VAL VAL PHE LEU LEU TRP GLY SER HIS ALA GLN SEQRES 14 A 229 LYS LYS GLY ALA ILE ILE ASP LYS GLN ARG HIS HIS VAL SEQRES 15 A 229 LEU LYS ALA PRO HIS PRO SER PRO LEU SER ALA HIS ARG SEQRES 16 A 229 GLY PHE PHE GLY CYS ASN HIS PHE VAL LEU ALA ASN GLN SEQRES 17 A 229 TRP LEU GLU GLN ARG GLY GLU THR PRO ILE ASP TRP MET SEQRES 18 A 229 PRO VAL LEU PRO ALA GLU SER GLU SEQRES 1 B 229 MET ALA ASN GLU LEU THR TRP HIS ASP VAL LEU ALA GLU SEQRES 2 B 229 GLU LYS GLN GLN PRO TYR PHE LEU ASN THR LEU GLN THR SEQRES 3 B 229 VAL ALA SER GLU ARG GLN SER GLY VAL THR ILE TYR PRO SEQRES 4 B 229 PRO GLN LYS ASP VAL PHE ASN ALA PHE ARG PHE THR GLU SEQRES 5 B 229 LEU GLY ASP VAL LYS VAL VAL ILE LEU GLY GLN ASP PRO SEQRES 6 B 229 TYR HIS GLY PRO GLY GLN ALA HIS GLY LEU ALA PHE SER SEQRES 7 B 229 VAL ARG PRO GLY ILE ALA ILE PRO PRO SER LEU LEU ASN SEQRES 8 B 229 MET TYR LYS GLU LEU GLU ASN THR ILE PRO GLY PHE THR SEQRES 9 B 229 ARG PRO ASN HIS GLY TYR LEU GLU SER TRP ALA ARG GLN SEQRES 10 B 229 GLY VAL LEU LEU LEU ASN THR VAL LEU THR VAL ARG ALA SEQRES 11 B 229 GLY GLN ALA HIS SER HIS ALA SER LEU GLY TRP GLU THR SEQRES 12 B 229 PHE THR ASP LYS VAL ILE SER LEU ILE ASN GLN HIS ARG SEQRES 13 B 229 GLU GLY VAL VAL PHE LEU LEU TRP GLY SER HIS ALA GLN SEQRES 14 B 229 LYS LYS GLY ALA ILE ILE ASP LYS GLN ARG HIS HIS VAL SEQRES 15 B 229 LEU LYS ALA PRO HIS PRO SER PRO LEU SER ALA HIS ARG SEQRES 16 B 229 GLY PHE PHE GLY CYS ASN HIS PHE VAL LEU ALA ASN GLN SEQRES 17 B 229 TRP LEU GLU GLN ARG GLY GLU THR PRO ILE ASP TRP MET SEQRES 18 B 229 PRO VAL LEU PRO ALA GLU SER GLU SEQRES 1 C 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 C 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 C 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 C 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 C 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 C 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 C 84 ASN LYS ILE LYS MET LEU SEQRES 1 D 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 D 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 D 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 D 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 D 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 D 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 D 84 ASN LYS ILE LYS MET LEU FORMUL 5 HOH *156(H2 O) HELIX 1 1 GLN A 17 GLY A 34 1 18 HELIX 2 2 PHE A 45 THR A 51 1 7 HELIX 3 3 GLU A 52 VAL A 56 5 5 HELIX 4 4 PRO A 86 ILE A 100 1 15 HELIX 5 5 LEU A 111 ARG A 116 1 6 HELIX 6 6 GLY A 140 ARG A 156 1 17 HELIX 7 7 GLY A 165 GLN A 169 1 5 HELIX 8 8 SER A 189 HIS A 194 1 6 HELIX 9 9 ASN A 201 ARG A 213 1 13 HELIX 10 10 VAL B 10 LYS B 15 1 6 HELIX 11 11 GLN B 17 GLY B 34 1 18 HELIX 12 12 PHE B 45 THR B 51 1 7 HELIX 13 13 GLU B 52 VAL B 56 5 5 HELIX 14 14 PRO B 86 ILE B 100 1 15 HELIX 15 15 LEU B 111 ARG B 116 1 6 HELIX 16 16 GLY B 140 ARG B 156 1 17 HELIX 17 17 GLY B 165 GLN B 169 1 5 HELIX 18 18 ASN B 201 ARG B 213 1 13 HELIX 19 19 LEU C 25 GLY C 34 1 10 HELIX 20 20 LEU D 25 GLY D 34 1 10 SHEET 1 A 4 VAL A 119 ASN A 123 0 SHEET 2 A 4 VAL A 58 GLY A 62 1 N ILE A 60 O LEU A 120 SHEET 3 A 4 VAL A 160 TRP A 164 1 O LEU A 162 N VAL A 59 SHEET 4 A 4 HIS A 181 ALA A 185 1 O HIS A 181 N PHE A 161 SHEET 1 B 4 VAL B 119 ASN B 123 0 SHEET 2 B 4 VAL B 58 GLY B 62 1 N GLY B 62 O LEU B 122 SHEET 3 B 4 VAL B 160 TRP B 164 1 O VAL B 160 N VAL B 59 SHEET 4 B 4 HIS B 181 ALA B 185 1 O HIS B 181 N PHE B 161 SHEET 1 C 5 GLU C 20 MET C 24 0 SHEET 2 C 5 ILE C 41 ALA C 46 -1 O VAL C 43 N ILE C 22 SHEET 3 C 5 ASN C 54 SER C 60 -1 O THR C 59 N LEU C 42 SHEET 4 C 5 PRO C 67 GLN C 73 -1 O ALA C 69 N LEU C 58 SHEET 5 C 5 ASN C 79 MET C 83 -1 O LYS C 80 N ILE C 72 SHEET 1 D 5 GLU D 20 MET D 24 0 SHEET 2 D 5 ILE D 41 ASP D 48 -1 O VAL D 43 N ILE D 22 SHEET 3 D 5 GLU D 53 SER D 60 -1 O THR D 59 N LEU D 42 SHEET 4 D 5 PRO D 67 GLN D 73 -1 O VAL D 71 N MET D 56 SHEET 5 D 5 ASN D 79 MET D 83 -1 O LYS D 80 N ILE D 72 CISPEP 1 ALA C 62 PRO C 63 0 -0.93 CISPEP 2 ALA D 62 PRO D 63 0 -0.14 CRYST1 51.164 89.902 141.776 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007053 0.00000