data_1LR0 # _entry.id 1LR0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LR0 pdb_00001lr0 10.2210/pdb1lr0/pdb RCSB RCSB016202 ? ? WWPDB D_1000016202 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LR0 _pdbx_database_status.recvd_initial_deposition_date 2002-05-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Witty, M.' 1 'Sanz, C.' 2 'Shah, A.' 3 'Grossman, J.G.' 4 'Mizuguchi, K.' 5 'Perham, R.N.' 6 'Luisi, B.' 7 # _citation.id primary _citation.title ;Structure of the periplasmic domain of Pseudomonas aeruginosa TolA: evidence for an evolutionary relationship with the TonB transporter protein. ; _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 21 _citation.page_first 4207 _citation.page_last 4218 _citation.year 2002 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12169623 _citation.pdbx_database_id_DOI 10.1093/emboj/cdf417 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Witty, M.' 1 ? primary 'Sanz, C.' 2 ? primary 'Shah, A.' 3 ? primary 'Grossmann, J.G.' 4 ? primary 'Mizuguchi, K.' 5 ? primary 'Perham, R.N.' 6 ? primary 'Luisi, B.' 7 ? # _cell.entry_id 1LR0 _cell.length_a 78.477 _cell.length_b 78.477 _cell.length_c 97.674 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LR0 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TolA protein' 14616.770 1 ? ? 'Periplasmic Domain (residues 226-347)' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 4 water nat water 18.015 122 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RALAELLSDTTERQQALADEVGSEVTGSLDDLIVNLVSQQWRRPPSARNG(MSE)SVEVLIE(MSE)LPDGTITN ASVSRSSGDKPFDSSAVAAVRNVGRIPE(MSE)QQLPRATFDSLYRQRRIIFKPEDLSLHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MRALAELLSDTTERQQALADEVGSEVTGSLDDLIVNLVSQQWRRPPSARNGMSVEVLIEMLPDGTITNASVSRSSGDKPF DSSAVAAVRNVGRIPEMQQLPRATFDSLYRQRRIIFKPEDLSLHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 ALA n 1 4 LEU n 1 5 ALA n 1 6 GLU n 1 7 LEU n 1 8 LEU n 1 9 SER n 1 10 ASP n 1 11 THR n 1 12 THR n 1 13 GLU n 1 14 ARG n 1 15 GLN n 1 16 GLN n 1 17 ALA n 1 18 LEU n 1 19 ALA n 1 20 ASP n 1 21 GLU n 1 22 VAL n 1 23 GLY n 1 24 SER n 1 25 GLU n 1 26 VAL n 1 27 THR n 1 28 GLY n 1 29 SER n 1 30 LEU n 1 31 ASP n 1 32 ASP n 1 33 LEU n 1 34 ILE n 1 35 VAL n 1 36 ASN n 1 37 LEU n 1 38 VAL n 1 39 SER n 1 40 GLN n 1 41 GLN n 1 42 TRP n 1 43 ARG n 1 44 ARG n 1 45 PRO n 1 46 PRO n 1 47 SER n 1 48 ALA n 1 49 ARG n 1 50 ASN n 1 51 GLY n 1 52 MSE n 1 53 SER n 1 54 VAL n 1 55 GLU n 1 56 VAL n 1 57 LEU n 1 58 ILE n 1 59 GLU n 1 60 MSE n 1 61 LEU n 1 62 PRO n 1 63 ASP n 1 64 GLY n 1 65 THR n 1 66 ILE n 1 67 THR n 1 68 ASN n 1 69 ALA n 1 70 SER n 1 71 VAL n 1 72 SER n 1 73 ARG n 1 74 SER n 1 75 SER n 1 76 GLY n 1 77 ASP n 1 78 LYS n 1 79 PRO n 1 80 PHE n 1 81 ASP n 1 82 SER n 1 83 SER n 1 84 ALA n 1 85 VAL n 1 86 ALA n 1 87 ALA n 1 88 VAL n 1 89 ARG n 1 90 ASN n 1 91 VAL n 1 92 GLY n 1 93 ARG n 1 94 ILE n 1 95 PRO n 1 96 GLU n 1 97 MSE n 1 98 GLN n 1 99 GLN n 1 100 LEU n 1 101 PRO n 1 102 ARG n 1 103 ALA n 1 104 THR n 1 105 PHE n 1 106 ASP n 1 107 SER n 1 108 LEU n 1 109 TYR n 1 110 ARG n 1 111 GLN n 1 112 ARG n 1 113 ARG n 1 114 ILE n 1 115 ILE n 1 116 PHE n 1 117 LYS n 1 118 PRO n 1 119 GLU n 1 120 ASP n 1 121 LEU n 1 122 SER n 1 123 LEU n 1 124 HIS n 1 125 HIS n 1 126 HIS n 1 127 HIS n 1 128 HIS n 1 129 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pseudomonas _entity_src_gen.pdbx_gene_src_gene TOLA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11c _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TOLA_PSEAE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RALAELLSDTTERQQALADEVGSEVTGSLDDLIVNLVSQQWRRPPSARNGMSVEVLIEMLPDGTITNASVSRSSGDKPFD SSAVAAVRNVGRIPEMQQLPRATFDSLYRQRRIIFKPEDLSL ; _struct_ref.pdbx_align_begin 226 _struct_ref.pdbx_db_accession P50600 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LR0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 123 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P50600 _struct_ref_seq.db_align_beg 226 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 347 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 123 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1LR0 MSE A 1 ? UNP P50600 ? ? 'initiating methionine' 1 1 1 1LR0 MSE A 52 ? UNP P50600 MET 276 'modified residue' 52 2 1 1LR0 MSE A 60 ? UNP P50600 MET 284 'modified residue' 60 3 1 1LR0 MSE A 97 ? UNP P50600 MET 321 'modified residue' 97 4 1 1LR0 HIS A 124 ? UNP P50600 ? ? 'expression tag' 124 5 1 1LR0 HIS A 125 ? UNP P50600 ? ? 'expression tag' 125 6 1 1LR0 HIS A 126 ? UNP P50600 ? ? 'expression tag' 126 7 1 1LR0 HIS A 127 ? UNP P50600 ? ? 'expression tag' 127 8 1 1LR0 HIS A 128 ? UNP P50600 ? ? 'expression tag' 128 9 1 1LR0 HIS A 129 ? UNP P50600 ? ? 'expression tag' 129 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1LR0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.57 _exptl_crystal.density_Matthews 2.97 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '5% wt/v PEG 6000, 100 mM TrisCl, pH 8.0, and 1 mM ZnSO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-04-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9791 1.0 2 0.9611 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9791, 0.9611' # _reflns.entry_id 1LR0 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.914 _reflns.d_resolution_low 19.84 _reflns.number_all 13441 _reflns.number_obs 13441 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.0830000 _reflns.pdbx_Rsym_value 0.0830000 _reflns.pdbx_netI_over_sigmaI 16.1 _reflns.B_iso_Wilson_estimate 19.0 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.914 _reflns_shell.d_res_low 2.01 _reflns_shell.percent_possible_all 94.3 _reflns_shell.Rmerge_I_obs 0.3220000 _reflns_shell.pdbx_Rsym_value 0.3220000 _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1LR0 _refine.ls_number_reflns_obs 13441 _refine.ls_number_reflns_all 13441 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 19.84 _refine.ls_d_res_high 1.914 _refine.ls_percent_reflns_obs 95.32 _refine.ls_R_factor_obs 0.1832500 _refine.ls_R_factor_all 0.1832500 _refine.ls_R_factor_R_work 0.1812400 _refine.ls_R_factor_R_free 0.2227500 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 664 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 23.390 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.129 _refine.overall_SU_B 3.797 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML 0.111 _refine.pdbx_overall_ESU_R 0.130 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 968 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 1100 _refine_hist.d_res_high 1.914 _refine_hist.d_res_low 19.84 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.025 0.021 ? 993 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 910 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.155 1.955 ? 1348 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.983 3.000 ? 2111 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.851 3.000 ? 125 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.586 15.00 ? 175 'X-RAY DIFFRACTION' ? r_chiral_restr 0.138 0.200 ? 156 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1109 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 192 'X-RAY DIFFRACTION' ? r_nbd_refined 0.263 0.300 ? 231 'X-RAY DIFFRACTION' ? r_nbd_other 0.211 0.300 ? 862 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.156 0.500 ? 90 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.088 0.500 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.346 0.300 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.260 0.300 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.334 0.500 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other 0.011 0.500 ? 1 'X-RAY DIFFRACTION' ? r_mcbond_it 1.725 1.500 ? 635 'X-RAY DIFFRACTION' ? r_mcangle_it 2.999 2.000 ? 1024 'X-RAY DIFFRACTION' ? r_scbond_it 4.810 3.000 ? 358 'X-RAY DIFFRACTION' ? r_scangle_it 7.727 4.500 ? 324 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.914 _refine_ls_shell.d_res_low 1.964 _refine_ls_shell.number_reflns_R_work 294 _refine_ls_shell.R_factor_R_work 0.2360000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3740000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1LR0 _struct.title 'Pseudomonas aeruginosa TolA Domain III, Seleno-methionine Derivative' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LR0 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Domain-Swapping, TolA, TonB, PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 3 ? TRP A 42 ? ALA A 3 TRP A 42 1 ? 40 HELX_P HELX_P2 2 ASP A 77 ? GLY A 92 ? ASP A 77 GLY A 92 1 ? 16 HELX_P HELX_P3 3 ILE A 94 ? LEU A 100 ? ILE A 94 LEU A 100 5 ? 7 HELX_P HELX_P4 4 PRO A 101 ? TYR A 109 ? PRO A 101 TYR A 109 1 ? 9 HELX_P HELX_P5 5 LYS A 117 ? HIS A 124 ? LYS A 117 HIS A 124 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 51 C ? ? ? 1_555 A MSE 52 N ? ? A GLY 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A MSE 52 C ? ? ? 1_555 A SER 53 N ? ? A MSE 52 A SER 53 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale3 covale both ? A GLU 59 C ? ? ? 1_555 A MSE 60 N ? ? A GLU 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 60 C ? ? ? 1_555 A LEU 61 N ? ? A MSE 60 A LEU 61 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A GLU 96 C ? ? ? 1_555 A MSE 97 N ? ? A GLU 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale6 covale both ? A MSE 97 C ? ? ? 1_555 A GLN 98 N ? ? A MSE 97 A GLN 98 1_555 ? ? ? ? ? ? ? 1.318 ? ? metalc1 metalc ? ? A HIS 125 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 125 A ZN 130 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc2 metalc ? ? B ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 130 A HOH 421 1_555 ? ? ? ? ? ? ? 2.537 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 66 ? ARG A 73 ? ILE A 66 ARG A 73 A 2 VAL A 54 ? MSE A 60 ? VAL A 54 MSE A 60 A 3 GLN A 111 ? PHE A 116 ? GLN A 111 PHE A 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 72 ? O SER A 72 N GLU A 55 ? N GLU A 55 A 2 3 N VAL A 54 ? N VAL A 54 O PHE A 116 ? O PHE A 116 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 130 ? 2 'BINDING SITE FOR RESIDUE ZN A 130' AC2 Software A ZN 131 ? 2 'BINDING SITE FOR RESIDUE ZN A 131' AC3 Software A TRS 303 ? 9 'BINDING SITE FOR RESIDUE TRS A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS A 125 ? HIS A 125 . ? 1_555 ? 2 AC1 2 HOH E . ? HOH A 421 . ? 1_555 ? 3 AC2 2 HIS A 126 ? HIS A 126 . ? 1_555 ? 4 AC2 2 HIS A 126 ? HIS A 126 . ? 2_655 ? 5 AC3 9 ASN A 50 ? ASN A 50 . ? 2_655 ? 6 AC3 9 ASN A 50 ? ASN A 50 . ? 1_555 ? 7 AC3 9 ASN A 50 ? ASN A 50 . ? 3_665 ? 8 AC3 9 GLU A 119 ? GLU A 119 . ? 2_655 ? 9 AC3 9 GLU A 119 ? GLU A 119 . ? 3_665 ? 10 AC3 9 GLU A 119 ? GLU A 119 . ? 1_555 ? 11 AC3 9 HOH E . ? HOH A 342 . ? 2_655 ? 12 AC3 9 HOH E . ? HOH A 342 . ? 3_665 ? 13 AC3 9 HOH E . ? HOH A 342 . ? 1_555 ? # _database_PDB_matrix.entry_id 1LR0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LR0 _atom_sites.fract_transf_matrix[1][1] 0.012743 _atom_sites.fract_transf_matrix[1][2] 0.007357 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014714 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010238 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 ARG 2 2 ? ? ? A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 GLU 6 6 6 GLU ALA A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 GLU 13 13 13 GLU ALA A . n A 1 14 ARG 14 14 14 ARG ALA A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 MSE 52 52 52 MSE MSE A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 MSE 60 60 60 MSE MSE A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 MSE 97 97 97 MSE MSE A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 HIS 125 125 125 HIS HIS A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 HIS 127 127 127 HIS HIS A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 HIS 129 129 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 130 129 ZN ZN A . C 2 ZN 1 131 130 ZN ZN A . D 3 TRS 1 303 3 TRS TRS A . E 4 HOH 1 304 2 HOH HOH A . E 4 HOH 2 305 3 HOH HOH A . E 4 HOH 3 306 4 HOH HOH A . E 4 HOH 4 307 5 HOH HOH A . E 4 HOH 5 308 6 HOH HOH A . E 4 HOH 6 309 7 HOH HOH A . E 4 HOH 7 310 8 HOH HOH A . E 4 HOH 8 311 9 HOH HOH A . E 4 HOH 9 312 10 HOH HOH A . E 4 HOH 10 313 11 HOH HOH A . E 4 HOH 11 314 12 HOH HOH A . E 4 HOH 12 315 13 HOH HOH A . E 4 HOH 13 316 14 HOH HOH A . E 4 HOH 14 317 15 HOH HOH A . E 4 HOH 15 318 16 HOH HOH A . E 4 HOH 16 319 17 HOH HOH A . E 4 HOH 17 320 18 HOH HOH A . E 4 HOH 18 321 19 HOH HOH A . E 4 HOH 19 322 20 HOH HOH A . E 4 HOH 20 323 21 HOH HOH A . E 4 HOH 21 324 22 HOH HOH A . E 4 HOH 22 325 23 HOH HOH A . E 4 HOH 23 326 24 HOH HOH A . E 4 HOH 24 327 25 HOH HOH A . E 4 HOH 25 328 26 HOH HOH A . E 4 HOH 26 329 27 HOH HOH A . E 4 HOH 27 330 28 HOH HOH A . E 4 HOH 28 331 29 HOH HOH A . E 4 HOH 29 332 30 HOH HOH A . E 4 HOH 30 333 31 HOH HOH A . E 4 HOH 31 334 32 HOH HOH A . E 4 HOH 32 335 33 HOH HOH A . E 4 HOH 33 336 34 HOH HOH A . E 4 HOH 34 337 35 HOH HOH A . E 4 HOH 35 338 36 HOH HOH A . E 4 HOH 36 339 37 HOH HOH A . E 4 HOH 37 340 38 HOH HOH A . E 4 HOH 38 341 39 HOH HOH A . E 4 HOH 39 342 40 HOH HOH A . E 4 HOH 40 343 41 HOH HOH A . E 4 HOH 41 344 42 HOH HOH A . E 4 HOH 42 345 43 HOH HOH A . E 4 HOH 43 346 44 HOH HOH A . E 4 HOH 44 347 45 HOH HOH A . E 4 HOH 45 348 46 HOH HOH A . E 4 HOH 46 349 47 HOH HOH A . E 4 HOH 47 350 48 HOH HOH A . E 4 HOH 48 351 49 HOH HOH A . E 4 HOH 49 352 50 HOH HOH A . E 4 HOH 50 353 51 HOH HOH A . E 4 HOH 51 354 52 HOH HOH A . E 4 HOH 52 355 53 HOH HOH A . E 4 HOH 53 356 54 HOH HOH A . E 4 HOH 54 357 55 HOH HOH A . E 4 HOH 55 358 56 HOH HOH A . E 4 HOH 56 359 57 HOH HOH A . E 4 HOH 57 360 58 HOH HOH A . E 4 HOH 58 361 59 HOH HOH A . E 4 HOH 59 362 60 HOH HOH A . E 4 HOH 60 363 61 HOH HOH A . E 4 HOH 61 364 62 HOH HOH A . E 4 HOH 62 365 63 HOH HOH A . E 4 HOH 63 366 64 HOH HOH A . E 4 HOH 64 367 65 HOH HOH A . E 4 HOH 65 368 66 HOH HOH A . E 4 HOH 66 369 67 HOH HOH A . E 4 HOH 67 370 68 HOH HOH A . E 4 HOH 68 371 69 HOH HOH A . E 4 HOH 69 372 71 HOH HOH A . E 4 HOH 70 373 72 HOH HOH A . E 4 HOH 71 374 73 HOH HOH A . E 4 HOH 72 375 74 HOH HOH A . E 4 HOH 73 376 75 HOH HOH A . E 4 HOH 74 377 76 HOH HOH A . E 4 HOH 75 378 77 HOH HOH A . E 4 HOH 76 379 78 HOH HOH A . E 4 HOH 77 380 79 HOH HOH A . E 4 HOH 78 381 80 HOH HOH A . E 4 HOH 79 382 81 HOH HOH A . E 4 HOH 80 383 82 HOH HOH A . E 4 HOH 81 384 84 HOH HOH A . E 4 HOH 82 385 85 HOH HOH A . E 4 HOH 83 386 86 HOH HOH A . E 4 HOH 84 387 88 HOH HOH A . E 4 HOH 85 388 89 HOH HOH A . E 4 HOH 86 389 90 HOH HOH A . E 4 HOH 87 390 91 HOH HOH A . E 4 HOH 88 391 92 HOH HOH A . E 4 HOH 89 392 93 HOH HOH A . E 4 HOH 90 393 95 HOH HOH A . E 4 HOH 91 394 96 HOH HOH A . E 4 HOH 92 395 97 HOH HOH A . E 4 HOH 93 396 98 HOH HOH A . E 4 HOH 94 397 99 HOH HOH A . E 4 HOH 95 398 100 HOH HOH A . E 4 HOH 96 399 101 HOH HOH A . E 4 HOH 97 400 102 HOH HOH A . E 4 HOH 98 401 103 HOH HOH A . E 4 HOH 99 402 104 HOH HOH A . E 4 HOH 100 403 105 HOH HOH A . E 4 HOH 101 404 106 HOH HOH A . E 4 HOH 102 405 107 HOH HOH A . E 4 HOH 103 406 108 HOH HOH A . E 4 HOH 104 407 109 HOH HOH A . E 4 HOH 105 408 110 HOH HOH A . E 4 HOH 106 409 112 HOH HOH A . E 4 HOH 107 410 113 HOH HOH A . E 4 HOH 108 411 115 HOH HOH A . E 4 HOH 109 412 116 HOH HOH A . E 4 HOH 110 413 117 HOH HOH A . E 4 HOH 111 414 119 HOH HOH A . E 4 HOH 112 415 122 HOH HOH A . E 4 HOH 113 416 123 HOH HOH A . E 4 HOH 114 417 124 HOH HOH A . E 4 HOH 115 418 126 HOH HOH A . E 4 HOH 116 419 129 HOH HOH A . E 4 HOH 117 420 133 HOH HOH A . E 4 HOH 118 421 134 HOH HOH A . E 4 HOH 119 422 135 HOH HOH A . E 4 HOH 120 423 136 HOH HOH A . E 4 HOH 121 424 137 HOH HOH A . E 4 HOH 122 425 4 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 52 A MSE 52 ? MET SELENOMETHIONINE 2 A MSE 60 A MSE 60 ? MET SELENOMETHIONINE 3 A MSE 97 A MSE 97 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 2 1,2,3 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 4300 ? 2 MORE -257 ? 2 'SSA (A^2)' 20350 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 78.4770000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 39.2385000000 -0.8660254038 -0.5000000000 0.0000000000 67.9630756128 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 418 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 125 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 125 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id ZN _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id ZN _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id ZN _pdbx_struct_conn_angle.ptnr2_auth_seq_id 130 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id E _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 421 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 102.7 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-29 2 'Structure model' 1 1 2007-10-16 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-12-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_conn_type 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.conn_type_id' 4 4 'Structure model' '_struct_conn.id' 5 4 'Structure model' '_struct_conn.pdbx_dist_value' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 4 'Structure model' '_struct_conn_type.id' 19 4 'Structure model' '_struct_ref_seq_dif.details' 20 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MLPHARE phasing . ? 1 REFMAC refinement 5.0 ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 389 ? ? 1_555 O A HOH 421 ? ? 2_655 1.73 2 1 O A HOH 384 ? ? 1_555 O A HOH 384 ? ? 7_556 1.95 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 10 ? ? CG A ASP 10 ? ? OD2 A ASP 10 ? ? 126.22 118.30 7.92 0.90 N 2 1 CB A ASP 20 ? ? CG A ASP 20 ? ? OD2 A ASP 20 ? ? 124.84 118.30 6.54 0.90 N 3 1 CB A ASP 81 ? ? CG A ASP 81 ? ? OD2 A ASP 81 ? ? 126.29 118.30 7.99 0.90 N 4 1 NE A ARG 89 ? ? CZ A ARG 89 ? ? NH2 A ARG 89 ? ? 116.22 120.30 -4.08 0.50 N 5 1 NE A ARG 102 ? ? CZ A ARG 102 ? ? NH2 A ARG 102 ? ? 117.26 120.30 -3.04 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 6 ? CG ? A GLU 6 CG 2 1 Y 1 A GLU 6 ? CD ? A GLU 6 CD 3 1 Y 1 A GLU 6 ? OE1 ? A GLU 6 OE1 4 1 Y 1 A GLU 6 ? OE2 ? A GLU 6 OE2 5 1 Y 1 A GLU 13 ? CG ? A GLU 13 CG 6 1 Y 1 A GLU 13 ? CD ? A GLU 13 CD 7 1 Y 1 A GLU 13 ? OE1 ? A GLU 13 OE1 8 1 Y 1 A GLU 13 ? OE2 ? A GLU 13 OE2 9 1 Y 1 A ARG 14 ? CG ? A ARG 14 CG 10 1 Y 1 A ARG 14 ? CD ? A ARG 14 CD 11 1 Y 1 A ARG 14 ? NE ? A ARG 14 NE 12 1 Y 1 A ARG 14 ? CZ ? A ARG 14 CZ 13 1 Y 1 A ARG 14 ? NH1 ? A ARG 14 NH1 14 1 Y 1 A ARG 14 ? NH2 ? A ARG 14 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A ARG 2 ? A ARG 2 3 1 Y 1 A HIS 129 ? A HIS 129 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 water HOH #