HEADER DE NOVO PROTEIN 20-MAY-02 1LT1 TITLE SLIDING HELIX INDUCED CHANGE OF COORDINATION GEOMETRY IN A MODEL DI- TITLE 2 MN(II) PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: L13G-DF1; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHETIZED. KEYWDS ALPHA-HELICAL BUNDLE, PROTEIN DESIGN, SLIDING HELIX, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.DI COSTANZO,S.GEREMIA REVDAT 4 25-OCT-23 1LT1 1 REMARK LINK REVDAT 3 24-FEB-09 1LT1 1 VERSN REVDAT 2 24-JUN-03 1LT1 1 JRNL REVDAT 1 20-MAY-03 1LT1 0 JRNL AUTH W.F.DEGRADO,L.DI COSTANZO,S.GEREMIA,A.LOMBARDI,V.PAVONE, JRNL AUTH 2 L.RANDACCIO JRNL TITL SLIDING HELIX AND CHANGE OF COORDINATION GEOMETRY IN A MODEL JRNL TITL 2 DI-MNII PROTEIN JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 42 417 2003 JRNL REFN ESSN 0570-0833 JRNL PMID 12569505 JRNL DOI 10.1002/ANIE.200390127 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.DI COSTANZO,H.WADE,S.GEREMIA,L.RANDACCIO,V.PAVONE, REMARK 1 AUTH 2 W.F.DEGRADO,A.LOMBARDI REMARK 1 TITL TOWARD THE DE NOVO DESIGN OF A CATALYTICALLY ACTIVE REMARK 1 TITL 2 HELIX-BUNDLE: A SUBSTRATE-ACCESSIBLE CARBOXYLATE-BRIDGED REMARK 1 TITL 3 DINUCLEAR METAL CENTER REMARK 1 REF J.AM.CHEM.SOC. V. 123 12749 2001 REMARK 1 REFN ISSN 0002-7863 REMARK 1 DOI 10.1021/JA010506X REMARK 1 REFERENCE 2 REMARK 1 AUTH A.LOMBARDI,C.M.SUMMA,S.GEREMIA,L.RANDACCIO,V.PAVONE, REMARK 1 AUTH 2 W.F.DEGRADO REMARK 1 TITL INAUGURAL ARTICLE: RETROSTRUCTURAL ANALYSIS OF REMARK 1 TITL 2 METALLOPROTEINS: APPLICATION TO THE DESIGN OF A MINIMAL REMARK 1 TITL 3 MODEL FOR DIIRON PROTEINS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 97 6298 2000 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.97.12.6298 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 36674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1936 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.030 ; 0.023 REMARK 3 ANGLE DISTANCE (A) : 2.220 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.200 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 6.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : 0.12500 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : 0.46300 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: AB DIMER FROM THE STRUCTURE 1JM0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, MANGANESE ACETATE, BUFFER REMARK 280 TRIS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.11250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.14400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.14400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.11250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 1 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 4 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 4 NE - CZ - NH2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP B 35 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 LEU C 6 CB - CG - CD1 ANGL. DEV. = -11.0 DEGREES REMARK 500 LEU D 33 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ASP D 35 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 26 88.91 -165.33 REMARK 500 LEU E 26 88.66 -160.92 REMARK 500 LYS G 25 43.54 -141.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 10 OE1 REMARK 620 2 GLU A 10 OE2 56.3 REMARK 620 3 GLU A 36 OE1 90.9 146.9 REMARK 620 4 HIS A 39 ND1 111.6 102.4 84.9 REMARK 620 5 HOH A1111 O 92.7 103.3 80.1 151.6 REMARK 620 6 GLU B 36 OE2 139.4 86.2 126.5 89.5 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1110 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE1 REMARK 620 2 HOH A1112 O 95.8 REMARK 620 3 HOH A1113 O 173.0 86.1 REMARK 620 4 HOH A1114 O 89.0 165.5 87.5 REMARK 620 5 HOH A1115 O 87.9 108.5 97.8 85.3 REMARK 620 6 HOH A1116 O 84.6 84.7 88.9 82.1 165.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE2 REMARK 620 2 HOH A1111 O 78.5 REMARK 620 3 GLU B 10 OE1 138.4 96.0 REMARK 620 4 GLU B 10 OE2 84.4 102.2 56.1 REMARK 620 5 GLU B 36 OE1 131.8 81.6 86.9 142.9 REMARK 620 6 HIS B 39 ND1 93.3 152.9 106.8 102.6 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1112 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 19 OE1 REMARK 620 2 HOH B1116 O 78.0 REMARK 620 3 HOH B1117 O 72.7 70.0 REMARK 620 4 HOH H1110 O 99.9 161.2 91.5 REMARK 620 5 HOH H1111 O 161.6 103.4 90.4 72.7 REMARK 620 6 HOH H1112 O 97.6 103.4 169.0 95.4 99.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C1109 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 35 OD1 REMARK 620 2 HOH B1113 O 86.8 REMARK 620 3 HOH B1114 O 93.7 82.4 REMARK 620 4 ASP C 1 OD1 102.0 170.8 94.2 REMARK 620 5 HOH C1110 O 175.3 89.9 89.1 81.4 REMARK 620 6 HOH C1111 O 89.3 94.2 175.3 88.7 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D1111 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1115 O REMARK 620 2 GLN D 16 OE1 172.3 REMARK 620 3 GLU D 19 OE1 90.9 96.8 REMARK 620 4 HOH D1113 O 84.9 98.1 72.9 REMARK 620 5 HOH D1114 O 92.2 80.3 171.9 99.9 REMARK 620 6 HOH D1115 O 89.1 87.7 108.5 173.9 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C1103 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 10 OE1 REMARK 620 2 GLU C 10 OE2 56.2 REMARK 620 3 GLU C 36 OE1 85.1 141.2 REMARK 620 4 HIS C 39 ND1 109.5 108.9 84.5 REMARK 620 5 GLU D 36 OE2 133.6 78.6 138.3 93.5 REMARK 620 6 HOH D1112 O 96.9 98.5 82.6 149.4 78.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D1104 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 36 OE2 REMARK 620 2 GLU D 10 OE2 91.4 REMARK 620 3 GLU D 10 OE1 145.0 57.4 REMARK 620 4 GLU D 36 OE1 117.6 151.1 94.6 REMARK 620 5 HIS D 39 ND1 86.2 101.3 113.3 82.0 REMARK 620 6 HOH D1112 O 79.9 97.7 88.3 87.9 156.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E1105 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 10 OE1 REMARK 620 2 GLU E 10 OE2 58.1 REMARK 620 3 GLU E 36 OE1 79.0 137.0 REMARK 620 4 HIS E 39 ND1 108.7 102.4 88.4 REMARK 620 5 GLU F 36 OE2 134.0 81.3 138.3 99.8 REMARK 620 6 HOH F1107 O 95.6 107.3 76.8 148.6 75.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F1106 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 36 OE2 REMARK 620 2 GLU F 10 OE2 94.8 REMARK 620 3 GLU F 10 OE1 149.2 56.8 REMARK 620 4 GLU F 36 OE1 114.6 150.6 94.1 REMARK 620 5 HIS F 39 ND1 83.5 101.3 111.4 84.5 REMARK 620 6 HOH F1107 O 83.2 96.4 88.3 86.0 158.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN G1107 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU G 10 OE2 REMARK 620 2 GLU G 10 OE1 56.9 REMARK 620 3 GLU G 36 OE1 145.1 88.4 REMARK 620 4 HIS G 39 ND1 99.5 103.3 83.5 REMARK 620 5 GLU H 36 OE2 100.1 154.3 114.7 90.9 REMARK 620 6 HOH H1109 O 83.0 84.2 98.7 172.3 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN H1108 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU G 36 OE2 REMARK 620 2 HOH G1108 O 81.3 REMARK 620 3 GLU H 10 OE1 150.6 82.5 REMARK 620 4 GLU H 10 OE2 98.4 86.4 56.1 REMARK 620 5 GLU H 36 OE1 120.7 92.9 84.5 140.4 REMARK 620 6 HIS H 39 ND1 88.4 169.6 107.5 96.7 91.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN E 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN F 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN G 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN H 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1112 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JM0 RELATED DB: PDB REMARK 900 1JM0 CONTAINS THE SAME PROTEIN COMPLEXED WITH MANGANESE (FORM I). REMARK 900 RELATED ID: 1JMB RELATED DB: PDB REMARK 900 1JMB CONTAINS THE SAME PROTEIN COMPLEXED WITH MANGANESE (FORM II). REMARK 900 RELATED ID: 1EC5 RELATED DB: PDB REMARK 900 1EC5 CONTAINS THE SAME PROTEIN WITH MUTANT A13L AND COMPLEXED WITH REMARK 900 ZINC. DBREF 1LT1 A 0 49 PDB 1LT1 1LT1 0 49 DBREF 1LT1 B 0 49 PDB 1LT1 1LT1 0 49 DBREF 1LT1 C 0 49 PDB 1LT1 1LT1 0 49 DBREF 1LT1 D 0 49 PDB 1LT1 1LT1 0 49 DBREF 1LT1 E 0 49 PDB 1LT1 1LT1 0 49 DBREF 1LT1 F 0 49 PDB 1LT1 1LT1 0 49 DBREF 1LT1 G 0 49 PDB 1LT1 1LT1 0 49 DBREF 1LT1 H 0 49 PDB 1LT1 1LT1 0 49 SEQRES 1 A 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 A 50 GLY ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 A 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 A 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 B 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 B 50 GLY ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 B 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 B 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 C 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 C 50 GLY ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 C 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 C 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 D 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 D 50 GLY ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 D 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 D 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 E 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 E 50 GLY ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 E 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 E 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 F 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 F 50 GLY ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 F 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 F 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 G 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 G 50 GLY ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 G 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 G 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 H 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 H 50 GLY ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 H 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 H 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 HET ACE A 0 3 HET NH2 A 49 1 HET ACE B 0 3 HET NH2 B 49 1 HET ACE C 0 3 HET NH2 C 49 1 HET ACE D 0 3 HET NH2 D 49 1 HET ACE E 0 3 HET NH2 E 49 1 HET ACE F 0 3 HET NH2 F 49 1 HET ACE G 0 3 HET NH2 G 49 1 HET ACE H 0 3 HET NH2 H 49 1 HET MN A1101 1 HET MN A1110 1 HET MN B1102 1 HET MN B1112 1 HET MN C1103 1 HET MN C1109 1 HET MN D1104 1 HET MN D1111 1 HET MN E1105 1 HET MN F1106 1 HET MN G1107 1 HET MN H1108 1 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM MN MANGANESE (II) ION FORMUL 1 ACE 8(C2 H4 O) FORMUL 1 NH2 8(H2 N) FORMUL 9 MN 12(MN 2+) FORMUL 21 HOH *290(H2 O) HELIX 1 1 ASP A 1 GLU A 22 1 22 HELIX 2 2 LEU A 26 GLY A 48 1 23 HELIX 3 3 ASP B 1 VAL B 24 1 24 HELIX 4 4 LEU B 26 LEU B 47 1 22 HELIX 5 5 ASP C 1 VAL C 24 1 24 HELIX 6 6 LEU C 26 LEU C 47 1 22 HELIX 7 7 ASP D 1 VAL D 24 1 24 HELIX 8 8 LEU D 26 LEU D 47 1 22 HELIX 9 9 ASP E 1 VAL E 24 1 24 HELIX 10 10 LEU E 26 LEU E 47 1 22 HELIX 11 11 ASP F 1 LYS F 25 1 25 HELIX 12 12 LEU F 26 LEU F 47 1 22 HELIX 13 13 ASP G 1 VAL G 24 1 24 HELIX 14 14 LEU G 26 GLY G 48 1 23 HELIX 15 15 ASP H 1 GLU H 22 1 22 HELIX 16 16 LEU H 26 GLY H 48 1 23 LINK C ACE A 0 N ASP A 1 1555 1555 1.33 LINK C GLY A 48 N NH2 A 49 1555 1555 1.35 LINK C ACE B 0 N ASP B 1 1555 1555 1.33 LINK C GLY B 48 N NH2 B 49 1555 1555 1.34 LINK C ACE C 0 N ASP C 1 1555 1555 1.33 LINK C GLY C 48 N NH2 C 49 1555 1555 1.33 LINK C ACE D 0 N ASP D 1 1555 1555 1.33 LINK C GLY D 48 N NH2 D 49 1555 1555 1.32 LINK C ACE E 0 N ASP E 1 1555 1555 1.33 LINK C GLY E 48 N NH2 E 49 1555 1555 1.33 LINK C ACE F 0 N ASP F 1 1555 1555 1.33 LINK C GLY F 48 N NH2 F 49 1555 1555 1.33 LINK C ACE G 0 N ASP G 1 1555 1555 1.33 LINK C GLY G 48 N NH2 G 49 1555 1555 1.33 LINK C ACE H 0 N ASP H 1 1555 1555 1.33 LINK C GLY H 48 N NH2 H 49 1555 1555 1.33 LINK OE1 GLU A 10 MN MN A1101 1555 1555 2.26 LINK OE2 GLU A 10 MN MN A1101 1555 1555 2.32 LINK OE1 GLU A 19 MN MN A1110 1555 1555 2.42 LINK OE1 GLU A 36 MN MN A1101 1555 1555 2.17 LINK OE2 GLU A 36 MN MN B1102 1555 1555 2.05 LINK ND1 HIS A 39 MN MN A1101 1555 1555 2.20 LINK MN MN A1101 O HOH A1111 1555 1555 2.48 LINK MN MN A1101 OE2 GLU B 36 1555 1555 2.06 LINK MN MN A1110 O HOH A1112 1555 1555 2.14 LINK MN MN A1110 O HOH A1113 1555 1555 2.01 LINK MN MN A1110 O HOH A1114 1555 1555 2.12 LINK MN MN A1110 O HOH A1115 1555 1555 2.19 LINK MN MN A1110 O HOH A1116 1555 1555 1.98 LINK O HOH A1111 MN MN B1102 1555 1555 2.39 LINK OE1 GLU B 10 MN MN B1102 1555 1555 2.30 LINK OE2 GLU B 10 MN MN B1102 1555 1555 2.28 LINK OE1 GLU B 19 MN MN B1112 1555 1555 2.39 LINK OD1 ASP B 35 MN MN C1109 1555 1555 2.23 LINK OE1 GLU B 36 MN MN B1102 1555 1555 2.07 LINK ND1 HIS B 39 MN MN B1102 1555 1555 2.24 LINK MN MN B1112 O HOH B1116 1555 1555 2.28 LINK MN MN B1112 O HOH B1117 1555 1555 2.07 LINK MN MN B1112 O HOH H1110 1555 1555 2.16 LINK MN MN B1112 O HOH H1111 1555 1555 1.99 LINK MN MN B1112 O HOH H1112 1555 1555 2.18 LINK O HOH B1113 MN MN C1109 1555 1555 2.10 LINK O HOH B1114 MN MN C1109 1555 1555 2.00 LINK O HOH B1115 MN MN D1111 1555 1555 2.28 LINK OD1 ASP C 1 MN MN C1109 1555 1555 2.13 LINK OE1 GLU C 10 MN MN C1103 1555 1555 2.17 LINK OE2 GLU C 10 MN MN C1103 1555 1555 2.37 LINK OE1 GLU C 36 MN MN C1103 1555 1555 2.14 LINK OE2 GLU C 36 MN MN D1104 1555 1555 2.06 LINK ND1 HIS C 39 MN MN C1103 1555 1555 2.14 LINK MN MN C1103 OE2 GLU D 36 1555 1555 2.10 LINK MN MN C1103 O HOH D1112 1555 1555 2.29 LINK MN MN C1109 O HOH C1110 1555 1555 2.25 LINK MN MN C1109 O HOH C1111 1555 1555 2.06 LINK OE2 GLU D 10 MN MN D1104 1555 1555 2.19 LINK OE1 GLU D 10 MN MN D1104 1555 1555 2.35 LINK OE1 GLN D 16 MN MN D1111 1555 1555 2.19 LINK OE1 GLU D 19 MN MN D1111 1555 1555 2.10 LINK OE1 GLU D 36 MN MN D1104 1555 1555 2.19 LINK ND1 HIS D 39 MN MN D1104 1555 1555 2.27 LINK MN MN D1104 O HOH D1112 1555 1555 2.37 LINK MN MN D1111 O HOH D1113 1555 1555 2.04 LINK MN MN D1111 O HOH D1114 1555 1555 1.85 LINK MN MN D1111 O HOH D1115 1555 1555 2.09 LINK OE1 GLU E 10 MN MN E1105 1555 1555 2.18 LINK OE2 GLU E 10 MN MN E1105 1555 1555 2.22 LINK OE1 GLU E 36 MN MN E1105 1555 1555 2.07 LINK OE2 GLU E 36 MN MN F1106 1555 1555 1.99 LINK ND1 HIS E 39 MN MN E1105 1555 1555 2.07 LINK MN MN E1105 OE2 GLU F 36 1555 1555 2.10 LINK MN MN E1105 O HOH F1107 1555 1555 2.36 LINK OE2 GLU F 10 MN MN F1106 1555 1555 2.21 LINK OE1 GLU F 10 MN MN F1106 1555 1555 2.33 LINK OE1 GLU F 36 MN MN F1106 1555 1555 2.22 LINK ND1 HIS F 39 MN MN F1106 1555 1555 2.18 LINK MN MN F1106 O HOH F1107 1555 1555 2.32 LINK OE2 GLU G 10 MN MN G1107 1555 1555 2.27 LINK OE1 GLU G 10 MN MN G1107 1555 1555 2.32 LINK OE1 GLU G 36 MN MN G1107 1555 1555 2.16 LINK OE2 GLU G 36 MN MN H1108 1555 1555 2.01 LINK ND1 HIS G 39 MN MN G1107 1555 1555 2.26 LINK MN MN G1107 OE2 GLU H 36 1555 1555 2.01 LINK MN MN G1107 O HOH H1109 1555 1555 2.01 LINK O HOH G1108 MN MN H1108 1555 1555 2.11 LINK OE1 GLU H 10 MN MN H1108 1555 1555 2.32 LINK OE2 GLU H 10 MN MN H1108 1555 1555 2.30 LINK OE1 GLU H 36 MN MN H1108 1555 1555 2.10 LINK ND1 HIS H 39 MN MN H1108 1555 1555 2.30 SITE 1 AC1 6 GLU A 10 GLU A 36 HIS A 39 HOH A1111 SITE 2 AC1 6 GLU B 36 MN B1102 SITE 1 AC2 6 GLU A 36 MN A1101 HOH A1111 GLU B 10 SITE 2 AC2 6 GLU B 36 HIS B 39 SITE 1 AC3 6 GLU C 10 GLU C 36 HIS C 39 GLU D 36 SITE 2 AC3 6 MN D1104 HOH D1112 SITE 1 AC4 6 GLU C 36 MN C1103 GLU D 10 GLU D 36 SITE 2 AC4 6 HIS D 39 HOH D1112 SITE 1 AC5 6 GLU E 10 GLU E 36 HIS E 39 GLU F 36 SITE 2 AC5 6 MN F1106 HOH F1107 SITE 1 AC6 6 GLU E 36 MN E1105 GLU F 10 GLU F 36 SITE 2 AC6 6 HIS F 39 HOH F1107 SITE 1 AC7 5 GLU G 10 GLU G 36 HIS G 39 GLU H 36 SITE 2 AC7 5 HOH H1109 SITE 1 AC8 5 GLU G 36 HOH G1108 GLU H 10 GLU H 36 SITE 2 AC8 5 HIS H 39 SITE 1 AC9 6 ASP B 35 HOH B1113 HOH B1114 ASP C 1 SITE 2 AC9 6 HOH C1110 HOH C1111 SITE 1 BC1 6 GLU A 19 HOH A1112 HOH A1113 HOH A1114 SITE 2 BC1 6 HOH A1115 HOH A1116 SITE 1 BC2 6 HOH B1115 GLN D 16 GLU D 19 HOH D1113 SITE 2 BC2 6 HOH D1114 HOH D1115 SITE 1 BC3 6 GLU B 19 HOH B1116 HOH B1117 HOH H1110 SITE 2 BC3 6 HOH H1111 HOH H1112 CRYST1 38.225 89.270 146.288 90.00 90.00 90.00 P 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006836 0.00000 HETATM 1 C ACE A 0 3.316 6.278 11.148 1.00 15.06 C HETATM 2 O ACE A 0 3.994 7.172 11.629 1.00 13.92 O HETATM 3 CH3 ACE A 0 2.474 5.392 12.035 1.00 16.91 C