data_1LU5 # _entry.id 1LU5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LU5 pdb_00001lu5 10.2210/pdb1lu5/pdb NDB DD0050 ? ? RCSB RCSB016271 ? ? WWPDB D_1000016271 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-12-20 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-08 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LU5 _pdbx_database_status.recvd_initial_deposition_date 2002-05-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Silverman, A.P.' 1 'Bu, W.' 2 'Cohen, S.M.' 3 'Lippard, S.J.' 4 # _citation.id primary _citation.title ;2.4-A Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 277 _citation.page_first 49743 _citation.page_last 49749 _citation.year 2002 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12377787 _citation.pdbx_database_id_DOI 10.1074/jbc.M206979200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Silverman, A.P.' 1 ? primary 'Bu, W.' 2 ? primary 'Cohen, S.M.' 3 ? primary 'Lippard, S.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3'" 3565.316 2 ? ? ? ? 2 polymer syn "5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3'" 3761.468 2 ? ? ? ? 3 non-polymer syn 'CIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX' 311.283 2 ? ? ? ? 4 water nat water 18.015 47 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DC)(DT)(DG)(DG)(DT)(DC)(DT)(DC)(DC)' CCTCTGGTCTCC A,C ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DG)(DA)(DC)(DC)(DA)(DG)(DA)(DG)(DG)' GGAGACCAGAGG B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX' LPT 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DT n 1 11 DC n 1 12 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DC n 2 7 DC n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DG n 2 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 LPT non-polymer . 'CIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX' ? 'C6 H16 N2 Pt 2' 311.283 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DC 12 12 12 DC C A . n B 2 1 DG 1 13 13 DG G B . n B 2 2 DG 2 14 14 DG G B . n B 2 3 DA 3 15 15 DA A B . n B 2 4 DG 4 16 16 DG G B . n B 2 5 DA 5 17 17 DA A B . n B 2 6 DC 6 18 18 DC C B . n B 2 7 DC 7 19 19 DC C B . n B 2 8 DA 8 20 20 DA A B . n B 2 9 DG 9 21 21 DG G B . n B 2 10 DA 10 22 22 DA A B . n B 2 11 DG 11 23 23 DG G B . n B 2 12 DG 12 24 24 DG G B . n C 1 1 DC 1 25 25 DC C C . n C 1 2 DC 2 26 26 DC C C . n C 1 3 DT 3 27 27 DT T C . n C 1 4 DC 4 28 28 DC C C . n C 1 5 DT 5 29 29 DT T C . n C 1 6 DG 6 30 30 DG G C . n C 1 7 DG 7 31 31 DG G C . n C 1 8 DT 8 32 32 DT T C . n C 1 9 DC 9 33 33 DC C C . n C 1 10 DT 10 34 34 DT T C . n C 1 11 DC 11 35 35 DC C C . n C 1 12 DC 12 36 36 DC C C . n D 2 1 DG 1 37 37 DG G D . n D 2 2 DG 2 38 38 DG G D . n D 2 3 DA 3 39 39 DA A D . n D 2 4 DG 4 40 40 DG G D . n D 2 5 DA 5 41 41 DA A D . n D 2 6 DC 6 42 42 DC C D . n D 2 7 DC 7 43 43 DC C D . n D 2 8 DA 8 44 44 DA A D . n D 2 9 DG 9 45 45 DG G D . n D 2 10 DA 10 46 46 DA A D . n D 2 11 DG 11 47 47 DG G D . n D 2 12 DG 12 48 48 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 LPT 1 49 49 LPT UNK A . F 3 LPT 1 50 50 LPT UNK C . G 4 HOH 1 204 204 HOH HOH A . G 4 HOH 2 214 214 HOH HOH A . G 4 HOH 3 216 216 HOH HOH A . G 4 HOH 4 222 222 HOH HOH A . G 4 HOH 5 224 224 HOH HOH A . G 4 HOH 6 230 230 HOH HOH A . G 4 HOH 7 231 231 HOH HOH A . G 4 HOH 8 232 232 HOH HOH A . G 4 HOH 9 233 233 HOH HOH A . G 4 HOH 10 241 241 HOH HOH A . G 4 HOH 11 246 246 HOH HOH A . H 4 HOH 1 207 207 HOH HOH B . H 4 HOH 2 211 211 HOH HOH B . H 4 HOH 3 213 213 HOH HOH B . H 4 HOH 4 218 218 HOH HOH B . H 4 HOH 5 220 220 HOH HOH B . H 4 HOH 6 225 225 HOH HOH B . H 4 HOH 7 228 228 HOH HOH B . H 4 HOH 8 239 239 HOH HOH B . H 4 HOH 9 240 240 HOH HOH B . H 4 HOH 10 244 244 HOH HOH B . H 4 HOH 11 245 245 HOH HOH B . I 4 HOH 1 201 201 HOH HOH C . I 4 HOH 2 202 202 HOH HOH C . I 4 HOH 3 206 206 HOH HOH C . I 4 HOH 4 210 210 HOH HOH C . I 4 HOH 5 212 212 HOH HOH C . I 4 HOH 6 219 219 HOH HOH C . I 4 HOH 7 223 223 HOH HOH C . I 4 HOH 8 226 226 HOH HOH C . I 4 HOH 9 234 234 HOH HOH C . I 4 HOH 10 236 236 HOH HOH C . I 4 HOH 11 237 237 HOH HOH C . J 4 HOH 1 203 203 HOH HOH D . J 4 HOH 2 205 205 HOH HOH D . J 4 HOH 3 208 208 HOH HOH D . J 4 HOH 4 209 209 HOH HOH D . J 4 HOH 5 215 215 HOH HOH D . J 4 HOH 6 217 217 HOH HOH D . J 4 HOH 7 221 221 HOH HOH D . J 4 HOH 8 227 227 HOH HOH D . J 4 HOH 9 229 229 HOH HOH D . J 4 HOH 10 235 235 HOH HOH D . J 4 HOH 11 238 238 HOH HOH D . J 4 HOH 12 242 242 HOH HOH D . J 4 HOH 13 243 243 HOH HOH D . J 4 HOH 14 248 248 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELXS phasing . ? 3 SHELXL-97 refinement . ? 4 # _cell.entry_id 1LU5 _cell.length_a 31.644 _cell.length_b 35.638 _cell.length_c 46.556 _cell.angle_alpha 79.53 _cell.angle_beta 83.02 _cell.angle_gamma 81.36 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LU5 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1LU5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 67.4 _exptl_crystal.density_Matthews 3.78 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'spermine, sodium cacodylate, magnesium acetate, PEG 4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 spermine ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'magnesium acetate' ? ? ? 1 4 1 'PEG 4000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-08-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 1LU5 _reflns.observed_criterion_sigma_F 4 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 7337 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value 0.09 _reflns.pdbx_netI_over_sigmaI 9.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 96.3 _reflns_shell.Rmerge_I_obs 0.251 _reflns_shell.pdbx_Rsym_value 0.277 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1LU5 _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 50.0 _refine.pdbx_ls_sigma_F 4 _refine.pdbx_ls_sigma_I 2 _refine.ls_number_reflns_all 6604 _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs 96.3 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters 4163 _refine.ls_number_restraints 4897 _refine.ls_percent_reflns_R_free 10.0 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB Entry 1AIO' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model isotropic _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1LU5 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen 1037.00 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 972 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 1037 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.00 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0003 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.075 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.R_factor_all_4sig_cutoff 0.2351 _pdbx_refine.R_factor_obs_4sig_cutoff 0.2008 _pdbx_refine.number_reflns_obs_4sig_cutoff 5267 _pdbx_refine.free_R_factor_4sig_cutoff 0.2495 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 565 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10 _pdbx_refine.entry_id 1LU5 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.2345 _pdbx_refine.number_reflns_obs_no_cutoff 6604 _pdbx_refine.free_R_factor_no_cutoff 0.2944 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 733 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10.00 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1LU5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 1LU5 _struct.title '2.4 Angstrom Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LU5 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'platinum-DNA complex, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1LU5 1LU5 ? ? ? 2 2 PDB 1LU5 1LU5 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LU5 A 1 ? 12 ? 1LU5 1 ? 12 ? 1 12 2 2 1LU5 B 1 ? 12 ? 1LU5 13 ? 24 ? 13 24 3 1 1LU5 C 1 ? 12 ? 1LU5 25 ? 36 ? 25 36 4 2 1LU5 D 1 ? 12 ? 1LU5 37 ? 48 ? 37 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,G,H 2 1 C,D,F,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 E LPT . PT ? ? A DG 6 A LPT 49 1_555 ? ? ? ? ? ? ? 1.965 ? ? metalc2 metalc ? ? A DG 7 N7 ? ? ? 1_555 E LPT . PT ? ? A DG 7 A LPT 49 1_555 ? ? ? ? ? ? ? 1.957 ? ? metalc3 metalc ? ? C DG 6 N7 ? ? ? 1_555 F LPT . PT ? ? C DG 30 C LPT 50 1_555 ? ? ? ? ? ? ? 1.961 ? ? metalc4 metalc ? ? C DG 7 N7 ? ? ? 1_555 F LPT . PT ? ? C DG 31 C LPT 50 1_555 ? ? ? ? ? ? ? 1.961 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 12 N1 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 12 O6 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 12 N2 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 27 D DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 27 D DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 29 D DA 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 29 D DA 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 32 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 32 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 34 D DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 34 D DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? E LPT . ? A LPT 49 ? 1_555 N2 ? E LPT . ? A LPT 49 ? 1_555 159.5 ? 2 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? E LPT . ? A LPT 49 ? 1_555 N1 ? E LPT . ? A LPT 49 ? 1_555 96.4 ? 3 N2 ? E LPT . ? A LPT 49 ? 1_555 PT ? E LPT . ? A LPT 49 ? 1_555 N1 ? E LPT . ? A LPT 49 ? 1_555 87.6 ? 4 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? E LPT . ? A LPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 92.3 ? 5 N2 ? E LPT . ? A LPT 49 ? 1_555 PT ? E LPT . ? A LPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 87.5 ? 6 N1 ? E LPT . ? A LPT 49 ? 1_555 PT ? E LPT . ? A LPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 167.2 ? 7 N7 ? C DG 6 ? C DG 30 ? 1_555 PT ? F LPT . ? C LPT 50 ? 1_555 N2 ? F LPT . ? C LPT 50 ? 1_555 167.6 ? 8 N7 ? C DG 6 ? C DG 30 ? 1_555 PT ? F LPT . ? C LPT 50 ? 1_555 N1 ? F LPT . ? C LPT 50 ? 1_555 73.6 ? 9 N2 ? F LPT . ? C LPT 50 ? 1_555 PT ? F LPT . ? C LPT 50 ? 1_555 N1 ? F LPT . ? C LPT 50 ? 1_555 99.1 ? 10 N7 ? C DG 6 ? C DG 30 ? 1_555 PT ? F LPT . ? C LPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 98.5 ? 11 N2 ? F LPT . ? C LPT 50 ? 1_555 PT ? F LPT . ? C LPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 88.2 ? 12 N1 ? F LPT . ? C LPT 50 ? 1_555 PT ? F LPT . ? C LPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 171.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A LPT 49 ? 5 'BINDING SITE FOR RESIDUE LPT A 49' AC2 Software C LPT 50 ? 4 'BINDING SITE FOR RESIDUE LPT C 50' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DG A 6 ? DG A 6 . ? 1_555 ? 2 AC1 5 DG A 7 ? DG A 7 . ? 1_555 ? 3 AC1 5 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH A 204 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 222 . ? 1_555 ? 6 AC2 4 DT C 5 ? DT C 29 . ? 1_555 ? 7 AC2 4 DG C 6 ? DG C 30 . ? 1_555 ? 8 AC2 4 DG C 7 ? DG C 31 . ? 1_555 ? 9 AC2 4 DT C 8 ? DT C 32 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 110.89 108.30 2.59 0.30 N 2 1 "O4'" B DG 23 ? ? "C1'" B DG 23 ? ? N9 B DG 23 ? ? 110.44 108.30 2.14 0.30 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'COVALENT METAL BONDS' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 LPT C8 C N N 147 LPT C7 C N N 148 LPT C6 C N N 149 LPT C5 C N N 150 LPT C4 C N N 151 LPT C3 C N N 152 LPT N2 N N N 153 LPT N1 N N N 154 LPT PT PT N N 155 LPT H81 H N N 156 LPT H82 H N N 157 LPT H71 H N N 158 LPT H72 H N N 159 LPT H61 H N N 160 LPT H62 H N N 161 LPT H51 H N N 162 LPT H52 H N N 163 LPT H41 H N N 164 LPT H42 H N N 165 LPT H3 H N N 166 LPT HN21 H N N 167 LPT HN22 H N N 168 LPT HN11 H N N 169 LPT HN12 H N N 170 LPT HN13 H N N 171 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 LPT C8 C7 sing N N 152 LPT C8 C3 sing N N 153 LPT C8 H81 sing N N 154 LPT C8 H82 sing N N 155 LPT C7 C6 sing N N 156 LPT C7 H71 sing N N 157 LPT C7 H72 sing N N 158 LPT C6 C5 sing N N 159 LPT C6 H61 sing N N 160 LPT C6 H62 sing N N 161 LPT C5 C4 sing N N 162 LPT C5 H51 sing N N 163 LPT C5 H52 sing N N 164 LPT C4 C3 sing N N 165 LPT C4 H41 sing N N 166 LPT C4 H42 sing N N 167 LPT C3 N2 sing N N 168 LPT C3 H3 sing N N 169 LPT N2 PT sing N N 170 LPT N2 HN21 sing N N 171 LPT N2 HN22 sing N N 172 LPT N1 PT sing N N 173 LPT N1 HN11 sing N N 174 LPT N1 HN12 sing N N 175 LPT N1 HN13 sing N N 176 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1LU5 'double helix' 1LU5 'a-form double helix' 1LU5 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.649 -0.242 -0.197 16.638 -6.876 0.013 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.569 -0.119 -0.208 4.376 -2.902 1.034 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DT 3 1_555 B DA 10 1_555 -0.044 0.064 -0.174 3.631 -12.501 14.439 3 A_DT3:DA22_B A 3 ? B 22 ? ? 1 1 A DC 4 1_555 B DG 9 1_555 0.393 0.062 -0.243 -1.373 -1.036 2.865 4 A_DC4:DG21_B A 4 ? B 21 ? 19 1 1 A DT 5 1_555 B DA 8 1_555 -0.091 -0.295 0.257 2.831 -5.198 -1.504 5 A_DT5:DA20_B A 5 ? B 20 ? 20 1 1 A DG 6 1_555 B DC 7 1_555 -0.343 0.021 0.176 19.479 -15.020 -0.987 6 A_DG6:DC19_B A 6 ? B 19 ? 19 1 1 A DG 7 1_555 B DC 6 1_555 -0.182 0.057 -0.033 -6.914 -13.198 3.507 7 A_DG7:DC18_B A 7 ? B 18 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.209 -0.306 -0.662 -0.657 -21.393 4.441 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.248 -0.353 0.112 -2.690 -13.362 1.012 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 -0.688 -0.284 0.132 2.768 -8.937 -5.152 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 -0.047 -0.166 0.031 0.417 -11.417 -6.231 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.643 -0.102 0.131 -6.664 -3.741 2.772 12 A_DC12:DG13_B A 12 ? B 13 ? 19 1 1 C DC 1 1_555 D DG 12 1_555 0.695 -0.177 0.018 11.888 -3.584 -1.258 13 C_DC25:DG48_D C 25 ? D 48 ? 19 1 1 C DC 2 1_555 D DG 11 1_555 0.502 -0.123 -0.254 9.167 -2.726 4.777 14 C_DC26:DG47_D C 26 ? D 47 ? 19 1 1 C DT 3 1_555 D DA 10 1_555 -0.319 -0.218 -0.203 4.856 -7.515 2.891 15 C_DT27:DA46_D C 27 ? D 46 ? 20 1 1 C DC 4 1_555 D DG 9 1_555 0.070 0.349 0.135 -3.104 -5.048 2.585 16 C_DC28:DG45_D C 28 ? D 45 ? 19 1 1 C DT 5 1_555 D DA 8 1_555 -0.143 -0.187 0.172 4.278 -5.197 -0.960 17 C_DT29:DA44_D C 29 ? D 44 ? 20 1 1 C DG 6 1_555 D DC 7 1_555 -0.255 0.122 0.510 21.673 -16.360 4.027 18 C_DG30:DC43_D C 30 ? D 43 ? 19 1 1 C DG 7 1_555 D DC 6 1_555 -0.144 -0.030 0.273 -4.493 -16.813 0.465 19 C_DG31:DC42_D C 31 ? D 42 ? 19 1 1 C DT 8 1_555 D DA 5 1_555 -0.614 -0.145 -0.245 -11.827 -21.810 -2.017 20 C_DT32:DA41_D C 32 ? D 41 ? 20 1 1 C DC 9 1_555 D DG 4 1_555 -0.140 -0.305 0.004 -10.895 -6.412 -1.466 21 C_DC33:DG40_D C 33 ? D 40 ? 19 1 1 C DT 10 1_555 D DA 3 1_555 -0.664 -0.071 0.466 -7.263 -2.725 0.132 22 C_DT34:DA39_D C 34 ? D 39 ? 20 1 1 C DC 11 1_555 D DG 2 1_555 -0.026 -0.005 0.269 0.361 -11.602 -4.536 23 C_DC35:DG38_D C 35 ? D 38 ? 19 1 1 C DC 12 1_555 D DG 1 1_555 1.085 -0.305 0.336 -10.105 -8.034 7.515 24 C_DC36:DG37_D C 36 ? D 37 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.992 -2.280 3.536 -3.279 4.171 25.843 -6.163 1.258 3.233 9.203 7.234 26.373 1 AA_DC1DC2:DG23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DT 3 1_555 B DA 10 1_555 0.172 -1.622 3.307 2.399 2.415 28.362 -3.833 0.192 3.164 4.906 -4.874 28.562 2 AA_DC2DT3:DA22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DT 3 1_555 B DA 10 1_555 A DC 4 1_555 B DG 9 1_555 -0.327 -1.440 3.413 -1.081 9.236 33.973 -3.743 0.381 2.942 15.450 1.808 35.187 3 AA_DT3DC4:DG21DA22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DC 4 1_555 B DG 9 1_555 A DT 5 1_555 B DA 8 1_555 -0.482 -1.685 3.227 -1.674 5.036 28.919 -4.345 0.610 2.920 9.977 3.317 29.392 4 AA_DC4DT5:DA20DG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DT 5 1_555 B DA 8 1_555 A DG 6 1_555 B DC 7 1_555 -0.699 -1.357 2.937 -0.328 6.227 25.716 -4.374 1.454 2.551 13.736 0.722 26.449 5 AA_DT5DG6:DC19DA20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DG 6 1_555 B DC 7 1_555 A DG 7 1_555 B DC 6 1_555 1.277 -1.619 3.711 1.655 28.507 32.494 -4.977 -1.581 1.837 42.218 -2.452 43.002 6 AA_DG6DG7:DC18DC19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.743 -0.882 3.041 5.802 3.496 34.535 -1.928 2.007 2.784 5.819 -9.657 35.173 7 AA_DG7DT8:DA17DC18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.622 -0.623 3.399 -2.118 4.304 34.817 -1.690 -1.353 3.259 7.151 3.519 35.136 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 -0.493 -0.494 3.233 0.468 7.302 28.981 -2.429 1.050 3.013 14.304 -0.918 29.871 9 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DC 11 1_555 B DG 2 1_555 0.119 -0.224 3.332 4.694 -1.529 40.839 -0.150 0.350 3.331 -2.182 -6.698 41.124 10 AA_DT10DC11:DG14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DC 12 1_555 B DG 1 1_555 0.081 -0.413 3.359 -1.324 6.194 32.722 -1.768 -0.365 3.224 10.867 2.323 33.313 11 AA_DC11DC12:DG13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 C DC 1 1_555 D DG 12 1_555 C DC 2 1_555 D DG 11 1_555 -0.636 -2.316 3.239 0.534 2.675 26.530 -5.688 1.512 2.982 5.810 -1.160 26.668 12 CC_DC25DC26:DG47DG48_DD C 25 ? D 48 ? C 26 ? D 47 ? 1 C DC 2 1_555 D DG 11 1_555 C DT 3 1_555 D DA 10 1_555 -0.436 -1.813 3.479 -0.009 2.674 28.404 -4.312 0.882 3.298 5.435 0.018 28.527 13 CC_DC26DT27:DA46DG47_DD C 26 ? D 47 ? C 27 ? D 46 ? 1 C DT 3 1_555 D DA 10 1_555 C DC 4 1_555 D DG 9 1_555 0.391 -1.587 3.401 -0.276 10.360 32.443 -4.313 -0.711 2.775 17.980 0.479 34.015 14 CC_DT27DC28:DG45DA46_DD C 27 ? D 46 ? C 28 ? D 45 ? 1 C DC 4 1_555 D DG 9 1_555 C DT 5 1_555 D DA 8 1_555 -0.262 -1.634 3.154 -0.785 5.546 30.934 -3.975 0.347 2.831 10.291 1.457 31.425 15 CC_DC28DT29:DA44DG45_DD C 28 ? D 45 ? C 29 ? D 44 ? 1 C DT 5 1_555 D DA 8 1_555 C DG 6 1_555 D DC 7 1_555 -0.629 -1.529 2.925 -2.416 3.830 25.594 -4.316 0.820 2.718 8.560 5.399 25.985 16 CC_DT29DG30:DC43DA44_DD C 29 ? D 44 ? C 30 ? D 43 ? 1 C DG 6 1_555 D DC 7 1_555 C DG 7 1_555 D DC 6 1_555 1.173 -1.726 3.675 2.568 26.173 32.663 -5.104 -1.384 1.919 39.530 -3.879 41.709 17 CC_DG30DG31:DC42DC43_DD C 30 ? D 43 ? C 31 ? D 42 ? 1 C DG 7 1_555 D DC 6 1_555 C DT 8 1_555 D DA 5 1_555 -0.751 -1.227 3.253 4.157 4.102 33.511 -2.726 1.922 2.974 7.048 -7.142 34.002 18 CC_DG31DT32:DA41DC42_DD C 31 ? D 42 ? C 32 ? D 41 ? 1 C DT 8 1_555 D DA 5 1_555 C DC 9 1_555 D DG 4 1_555 0.559 -0.819 3.255 0.848 5.175 37.420 -1.920 -0.756 3.130 8.018 -1.313 37.773 19 CC_DT32DC33:DG40DA41_DD C 32 ? D 41 ? C 33 ? D 40 ? 1 C DC 9 1_555 D DG 4 1_555 C DT 10 1_555 D DA 3 1_555 -0.196 -0.575 3.385 -1.624 3.537 28.881 -1.935 0.025 3.298 7.050 3.238 29.137 20 CC_DC33DT34:DA39DG40_DD C 33 ? D 40 ? C 34 ? D 39 ? 1 C DT 10 1_555 D DA 3 1_555 C DC 11 1_555 D DG 2 1_555 0.059 -0.382 3.119 2.877 0.977 39.257 -0.678 0.236 3.106 1.452 -4.274 39.370 21 CC_DT34DC35:DG38DA39_DD C 34 ? D 39 ? C 35 ? D 38 ? 1 C DC 11 1_555 D DG 2 1_555 C DC 12 1_555 D DG 1 1_555 0.670 -0.302 3.469 2.089 1.735 36.249 -0.741 -0.764 3.483 2.783 -3.352 36.347 22 CC_DC35DC36:DG37DG38_DD C 35 ? D 38 ? C 36 ? D 37 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AIO _pdbx_initial_refinement_model.details 'PDB Entry 1AIO' # _atom_sites.entry_id 1LU5 _atom_sites.fract_transf_matrix[1][1] 0.031602 _atom_sites.fract_transf_matrix[1][2] -0.004802 _atom_sites.fract_transf_matrix[1][3] -0.003113 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028382 _atom_sites.fract_transf_matrix[2][3] -0.004795 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021947 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P PT # loop_