data_1LUX # _entry.id 1LUX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LUX pdb_00001lux 10.2210/pdb1lux/pdb RCSB RCSB016296 ? ? WWPDB D_1000016296 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1LUU _pdbx_database_related.details 'NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 4 MODIFICATIONS (OMC32 OMG34 1MG37 5MC40)' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LUX _pdbx_database_status.recvd_initial_deposition_date 2002-05-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stuart, J.W.' 1 'Koshlap, K.M.' 2 'Guenther, R.H.' 3 'Agris, P.F.' 4 # _citation.id primary _citation.title 'Naturally-occurring Modification Restricts the Anticodon Domain Conformational Space of tRNA(Phe).' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 334 _citation.page_first 901 _citation.page_last 918 _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14643656 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2003.09.058 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stuart, J.W.' 1 ? primary 'Koshlap, K.M.' 2 ? primary 'Guenther, R.' 3 ? primary 'Agris, P.F.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3'" _entity.formula_weight 5508.404 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'ANTICODON (RESIDUES 27-43) OF TRNA-PHE WITH THREE MODIFIED RESIDUES (OMC at position 32, OMG at 34, M5C at position 40)' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CCAGA(OMC)U(OMG)AAGAU(5MC)UGG' _entity_poly.pdbx_seq_one_letter_code_can CCAGACUGAAGAUCUGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 A n 1 4 G n 1 5 A n 1 6 OMC n 1 7 U n 1 8 OMG n 1 9 A n 1 10 A n 1 11 G n 1 12 A n 1 13 U n 1 14 5MC n 1 15 U n 1 16 G n 1 17 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SEQUENCE WITH NATURALLY OCCURRING MODIFICATIONS SYNTHESIZED USING PHOSPHORAMIDITE CHEMISTRY.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1LUX _struct_ref.pdbx_db_accession 1LUX _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LUX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1LUX _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 43 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 43 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 DQF-COSY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.60 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.6 mM RNA, 10 mM cacodylate buffer, pH 5.6, 0.1 mM EDTA' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1LUX _pdbx_nmr_refine.method 'global fold by distance geometry. refinement by simulated annealing using the amber forcefield' _pdbx_nmr_refine.details '271 restraints (258 NOE-Derived, 13 h-bond), 95 dihedral angle' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1LUX _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_ensemble.entry_id 1LUX _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR ? collection Bruker 1 Felix 98 'data analysis' Accelrys 2 Discover 98 refinement Accelrys 3 # _exptl.entry_id 1LUX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1LUX _struct.title 'NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LUX _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, 2'-O-METHYL, M5C, RNA ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 5 "O3'" ? ? ? 1_555 A OMC 6 P ? ? A A 31 A OMC 32 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale2 covale both ? A OMC 6 "O3'" ? ? ? 1_555 A U 7 P ? ? A OMC 32 A U 33 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale3 covale both ? A U 7 "O3'" ? ? ? 1_555 A OMG 8 P ? ? A U 33 A OMG 34 1_555 ? ? ? ? ? ? ? 1.633 ? ? covale4 covale both ? A OMG 8 "O3'" ? ? ? 1_555 A A 9 P ? ? A OMG 34 A A 35 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale5 covale both ? A U 13 "O3'" ? ? ? 1_555 A 5MC 14 P ? ? A U 39 A 5MC 40 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale6 covale both ? A 5MC 14 "O3'" ? ? ? 1_555 A U 15 P ? ? A 5MC 40 A U 41 1_555 ? ? ? ? ? ? ? 1.612 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 15 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 15 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A 5MC 14 N3 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A 5MC 14 O2 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A 5MC 14 N4 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 13 N3 ? ? A A 31 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 13 O4 ? ? A A 31 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A OMC 6 N3 ? ? ? 1_555 A A 12 N6 ? ? A OMC 32 A A 38 1_555 ? ? ? ? ? ? 'OMC-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 12 N1 ? ? A U 33 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 12 N6 ? ? A U 33 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1LUX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LUX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 27 27 C C A . n A 1 2 C 2 28 28 C C A . n A 1 3 A 3 29 29 A A A . n A 1 4 G 4 30 30 G G A . n A 1 5 A 5 31 31 A A A . n A 1 6 OMC 6 32 32 OMC OMC A . n A 1 7 U 7 33 33 U U A . n A 1 8 OMG 8 34 34 OMG OMG A . n A 1 9 A 9 35 35 A A A . n A 1 10 A 10 36 36 A A A . n A 1 11 G 11 37 37 G G A . n A 1 12 A 12 38 38 A A A . n A 1 13 U 13 39 39 U U A . n A 1 14 5MC 14 40 40 5MC 5MC A . n A 1 15 U 15 41 41 U U A . n A 1 16 G 16 42 42 G G A . n A 1 17 G 17 43 43 G G A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A OMC 6 A OMC 32 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 2 A OMG 8 A OMG 34 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 3 A 5MC 14 A 5MC 40 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-09 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 9 N1 A A 38 ? ? C2 A A 38 ? ? 1.394 1.339 0.055 0.009 N 2 10 N1 A A 38 ? ? C2 A A 38 ? ? 1.394 1.339 0.055 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 114.47 108.50 5.97 0.70 N 2 1 "C5'" A U 33 ? ? "C4'" A U 33 ? ? "O4'" A U 33 ? ? 101.86 109.10 -7.24 1.20 N 3 1 "C3'" A U 33 ? ? "C2'" A U 33 ? ? "C1'" A U 33 ? ? 107.80 101.50 6.30 0.80 N 4 1 "O4'" A U 33 ? ? "C1'" A U 33 ? ? N1 A U 33 ? ? 116.13 108.50 7.63 0.70 N 5 1 "C3'" A OMG 34 ? ? "O3'" A OMG 34 ? ? P A A 35 ? ? 130.97 119.70 11.27 1.20 Y 6 1 "O3'" A OMG 34 ? ? P A A 35 ? ? "O5'" A A 35 ? ? 92.20 104.00 -11.80 1.90 Y 7 1 "C5'" A A 35 ? ? "C4'" A A 35 ? ? "O4'" A A 35 ? ? 117.77 109.80 7.97 0.90 N 8 1 "O4'" A A 35 ? ? "C1'" A A 35 ? ? N9 A A 35 ? ? 116.20 108.50 7.70 0.70 N 9 1 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 124.11 129.30 -5.19 0.50 N 10 1 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.71 110.60 4.11 0.50 N 11 1 "O4'" A G 43 ? ? "C1'" A G 43 ? ? N9 A G 43 ? ? 115.98 108.50 7.48 0.70 N 12 2 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 112.82 108.50 4.32 0.70 N 13 2 N9 A A 35 ? ? "C1'" A A 35 ? ? "C2'" A A 35 ? ? 123.94 114.00 9.94 1.30 N 14 2 "O4'" A A 36 ? ? "C1'" A A 36 ? ? N9 A A 36 ? ? 115.60 108.50 7.10 0.70 N 15 2 "C5'" A A 38 ? ? "C4'" A A 38 ? ? "O4'" A A 38 ? ? 115.89 109.80 6.09 0.90 N 16 2 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 124.13 129.30 -5.17 0.50 N 17 2 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.67 110.60 4.07 0.50 N 18 2 "O4'" A U 41 ? ? "C1'" A U 41 ? ? N1 A U 41 ? ? 112.76 108.50 4.26 0.70 N 19 2 "O4'" A G 43 ? ? "C1'" A G 43 ? ? N9 A G 43 ? ? 115.93 108.50 7.43 0.70 N 20 3 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 113.29 108.50 4.79 0.70 N 21 3 "C5'" A A 35 ? ? "C4'" A A 35 ? ? "O4'" A A 35 ? ? 115.35 109.80 5.55 0.90 N 22 3 "O4'" A A 35 ? ? "C1'" A A 35 ? ? N9 A A 35 ? ? 113.31 108.50 4.81 0.70 N 23 3 "O4'" A G 37 ? ? "C1'" A G 37 ? ? N9 A G 37 ? ? 113.22 108.50 4.72 0.70 N 24 3 "C5'" A A 38 ? ? "C4'" A A 38 ? ? "O4'" A A 38 ? ? 116.24 109.80 6.44 0.90 N 25 3 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 123.95 129.30 -5.35 0.50 N 26 3 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.73 110.60 4.13 0.50 N 27 3 "O4'" A U 41 ? ? "C1'" A U 41 ? ? N1 A U 41 ? ? 112.74 108.50 4.24 0.70 N 28 3 "O4'" A G 43 ? ? "C1'" A G 43 ? ? N9 A G 43 ? ? 115.68 108.50 7.18 0.70 N 29 4 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 114.67 108.50 6.17 0.70 N 30 4 "C3'" A OMG 34 ? ? "O3'" A OMG 34 ? ? P A A 35 ? ? 128.96 119.70 9.26 1.20 Y 31 4 "C5'" A A 35 ? ? "C4'" A A 35 ? ? "O4'" A A 35 ? ? 117.38 109.80 7.58 0.90 N 32 4 "O4'" A A 35 ? ? "C1'" A A 35 ? ? N9 A A 35 ? ? 115.99 108.50 7.49 0.70 N 33 4 "O4'" A A 36 ? ? "C1'" A A 36 ? ? N9 A A 36 ? ? 114.65 108.50 6.15 0.70 N 34 4 "C5'" A A 38 ? ? "C4'" A A 38 ? ? "O4'" A A 38 ? ? 115.28 109.80 5.48 0.90 N 35 4 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 124.01 129.30 -5.29 0.50 N 36 4 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.76 110.60 4.16 0.50 N 37 4 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 112.86 108.50 4.36 0.70 N 38 5 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 112.84 108.50 4.34 0.70 N 39 5 "O4'" A A 35 ? ? "C1'" A A 35 ? ? N9 A A 35 ? ? 117.31 108.50 8.81 0.70 N 40 5 "O4'" A A 36 ? ? "C1'" A A 36 ? ? N9 A A 36 ? ? 112.99 108.50 4.49 0.70 N 41 5 "O4'" A G 37 ? ? "C1'" A G 37 ? ? N9 A G 37 ? ? 113.95 108.50 5.45 0.70 N 42 5 "C5'" A A 38 ? ? "C4'" A A 38 ? ? "O4'" A A 38 ? ? 115.34 109.80 5.54 0.90 N 43 5 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 123.97 129.30 -5.33 0.50 N 44 5 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.95 110.60 4.35 0.50 N 45 5 "O4'" A G 43 ? ? "C1'" A G 43 ? ? N9 A G 43 ? ? 116.01 108.50 7.51 0.70 N 46 6 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 112.78 108.50 4.28 0.70 N 47 6 "O4'" A U 33 ? ? "C1'" A U 33 ? ? N1 A U 33 ? ? 112.88 108.50 4.38 0.70 N 48 6 "C5'" A A 35 ? ? "C4'" A A 35 ? ? "O4'" A A 35 ? ? 116.34 109.80 6.54 0.90 N 49 6 "O4'" A A 35 ? ? "C1'" A A 35 ? ? N9 A A 35 ? ? 120.73 108.50 12.23 0.70 N 50 6 "C5'" A A 38 ? ? "C4'" A A 38 ? ? "O4'" A A 38 ? ? 115.30 109.80 5.50 0.90 N 51 6 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 124.02 129.30 -5.28 0.50 N 52 6 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.81 110.60 4.21 0.50 N 53 6 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 113.15 108.50 4.65 0.70 N 54 7 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 113.20 108.50 4.70 0.70 N 55 7 "C3'" A A 35 ? ? "C2'" A A 35 ? ? "C1'" A A 35 ? ? 96.75 101.30 -4.55 0.70 N 56 7 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 123.97 129.30 -5.33 0.50 N 57 7 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.83 110.60 4.23 0.50 N 58 7 "O4'" A U 39 ? ? "C1'" A U 39 ? ? N1 A U 39 ? ? 112.99 108.50 4.49 0.70 N 59 7 "O4'" A U 41 ? ? "C1'" A U 41 ? ? N1 A U 41 ? ? 113.00 108.50 4.50 0.70 N 60 7 "O4'" A G 43 ? ? "C1'" A G 43 ? ? N9 A G 43 ? ? 115.77 108.50 7.27 0.70 N 61 8 "C5'" A A 29 ? ? "C4'" A A 29 ? ? "O4'" A A 29 ? ? 118.05 109.80 8.25 0.90 N 62 8 "C3'" A A 35 ? ? "C2'" A A 35 ? ? "C1'" A A 35 ? ? 96.53 101.30 -4.77 0.70 N 63 8 "O4'" A A 35 ? ? "C1'" A A 35 ? ? N9 A A 35 ? ? 113.23 108.50 4.73 0.70 N 64 8 "O4'" A G 37 ? ? "C1'" A G 37 ? ? N9 A G 37 ? ? 113.92 108.50 5.42 0.70 N 65 8 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 124.00 129.30 -5.30 0.50 N 66 8 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.88 110.60 4.28 0.50 N 67 9 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 114.75 108.50 6.25 0.70 N 68 9 "O4'" A G 37 ? ? "C1'" A G 37 ? ? N9 A G 37 ? ? 113.40 108.50 4.90 0.70 N 69 9 "C5'" A A 38 ? ? "C4'" A A 38 ? ? "O4'" A A 38 ? ? 116.23 109.80 6.43 0.90 N 70 9 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 124.19 129.30 -5.11 0.50 N 71 9 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.77 110.60 4.17 0.50 N 72 9 "O4'" A U 41 ? ? "C1'" A U 41 ? ? N1 A U 41 ? ? 112.97 108.50 4.47 0.70 N 73 10 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 114.42 108.50 5.92 0.70 N 74 10 "O4'" A U 33 ? ? "C1'" A U 33 ? ? N1 A U 33 ? ? 114.91 108.50 6.41 0.70 N 75 10 "C5'" A A 35 ? ? "C4'" A A 35 ? ? "O4'" A A 35 ? ? 116.24 109.80 6.44 0.90 N 76 10 "C1'" A A 35 ? ? "O4'" A A 35 ? ? "C4'" A A 35 ? ? 105.11 109.70 -4.59 0.70 N 77 10 "O4'" A A 35 ? ? "C1'" A A 35 ? ? N9 A A 35 ? ? 116.07 108.50 7.57 0.70 N 78 10 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 124.26 129.30 -5.04 0.50 N 79 10 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 114.88 110.60 4.28 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 29 ? ? 0.083 'SIDE CHAIN' 2 1 A A 31 ? ? 0.063 'SIDE CHAIN' 3 1 A A 35 ? ? 0.091 'SIDE CHAIN' 4 1 U A 41 ? ? 0.070 'SIDE CHAIN' 5 2 U A 33 ? ? 0.130 'SIDE CHAIN' 6 2 A A 35 ? ? 0.120 'SIDE CHAIN' 7 2 U A 41 ? ? 0.061 'SIDE CHAIN' 8 3 C A 27 ? ? 0.082 'SIDE CHAIN' 9 3 A A 31 ? ? 0.066 'SIDE CHAIN' 10 3 U A 33 ? ? 0.094 'SIDE CHAIN' 11 3 A A 35 ? ? 0.086 'SIDE CHAIN' 12 3 A A 36 ? ? 0.099 'SIDE CHAIN' 13 3 G A 37 ? ? 0.069 'SIDE CHAIN' 14 3 U A 41 ? ? 0.069 'SIDE CHAIN' 15 4 A A 31 ? ? 0.074 'SIDE CHAIN' 16 4 U A 33 ? ? 0.082 'SIDE CHAIN' 17 4 A A 35 ? ? 0.210 'SIDE CHAIN' 18 4 G A 43 ? ? 0.079 'SIDE CHAIN' 19 5 G A 30 ? ? 0.061 'SIDE CHAIN' 20 5 A A 31 ? ? 0.066 'SIDE CHAIN' 21 5 U A 33 ? ? 0.062 'SIDE CHAIN' 22 5 A A 35 ? ? 0.146 'SIDE CHAIN' 23 5 G A 37 ? ? 0.063 'SIDE CHAIN' 24 5 A A 38 ? ? 0.056 'SIDE CHAIN' 25 6 C A 27 ? ? 0.066 'SIDE CHAIN' 26 6 A A 31 ? ? 0.094 'SIDE CHAIN' 27 6 U A 33 ? ? 0.091 'SIDE CHAIN' 28 6 A A 35 ? ? 0.063 'SIDE CHAIN' 29 6 G A 37 ? ? 0.074 'SIDE CHAIN' 30 6 G A 43 ? ? 0.061 'SIDE CHAIN' 31 7 C A 27 ? ? 0.086 'SIDE CHAIN' 32 7 A A 29 ? ? 0.061 'SIDE CHAIN' 33 7 A A 31 ? ? 0.066 'SIDE CHAIN' 34 7 U A 33 ? ? 0.160 'SIDE CHAIN' 35 7 A A 36 ? ? 0.087 'SIDE CHAIN' 36 8 C A 28 ? ? 0.087 'SIDE CHAIN' 37 8 A A 31 ? ? 0.086 'SIDE CHAIN' 38 8 G A 37 ? ? 0.060 'SIDE CHAIN' 39 8 A A 38 ? ? 0.091 'SIDE CHAIN' 40 9 A A 31 ? ? 0.082 'SIDE CHAIN' 41 9 U A 33 ? ? 0.079 'SIDE CHAIN' 42 9 A A 36 ? ? 0.085 'SIDE CHAIN' 43 9 G A 42 ? ? 0.056 'SIDE CHAIN' 44 10 A A 31 ? ? 0.079 'SIDE CHAIN' 45 10 U A 33 ? ? 0.218 'SIDE CHAIN' 46 10 G A 37 ? ? 0.057 'SIDE CHAIN' 47 10 A A 38 ? ? 0.067 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1LUX 'double helix' 1LUX 'a-form double helix' 1LUX 'hairpin loop' 1LUX 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 17 1_555 0.675 -0.267 0.385 8.473 -20.951 -4.112 1 A_C27:G43_A A 27 ? A 43 ? 19 1 1 A C 2 1_555 A G 16 1_555 -0.460 -0.043 0.059 11.278 -20.714 -2.360 2 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A A 3 1_555 A U 15 1_555 -0.530 -0.133 -0.090 -2.003 -16.862 -1.510 3 A_A29:U41_A A 29 ? A 41 ? 20 1 1 A G 4 1_555 A 5MC 14 1_555 0.175 -0.039 -0.033 -8.360 -19.144 -2.090 4 A_G30:5MC40_A A 30 ? A 40 ? 19 1 1 A A 5 1_555 A U 13 1_555 -0.527 -0.203 -0.062 -5.808 -21.995 0.074 5 A_A31:U39_A A 31 ? A 39 ? 20 1 1 A OMC 6 1_555 A A 12 1_555 2.502 -0.328 0.077 -10.151 -3.011 -2.349 6 A_OMC32:A38_A A 32 ? A 38 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 17 1_555 A C 2 1_555 A G 16 1_555 -0.666 -1.830 2.877 -2.004 7.371 30.865 -4.454 0.914 2.424 13.591 3.695 31.774 1 AA_C27C28:G42G43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A C 2 1_555 A G 16 1_555 A A 3 1_555 A U 15 1_555 -0.262 -1.486 3.242 -0.592 21.274 35.687 -4.108 0.314 2.076 31.503 0.877 41.373 2 AA_C28A29:U41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A A 3 1_555 A U 15 1_555 A G 4 1_555 A 5MC 14 1_555 0.243 -2.063 3.232 -0.592 15.230 29.916 -5.696 -0.503 1.975 27.381 1.065 33.495 3 AA_A29G30:5MC40U41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A G 4 1_555 A 5MC 14 1_555 A A 5 1_555 A U 13 1_555 0.256 -1.853 2.991 -0.534 11.586 30.630 -4.923 -0.530 2.161 21.010 0.969 32.703 4 AA_G30A31:U395MC40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A A 5 1_555 A U 13 1_555 A OMC 6 1_555 A A 12 1_555 -0.263 -1.194 3.183 1.680 7.122 47.198 -2.013 0.451 2.973 8.832 -2.083 47.730 5 AA_A31OMC32:A38U39_AA A 31 ? A 39 ? A 32 ? A 38 ? #