data_1LX5 # _entry.id 1LX5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LX5 RCSB RCSB016369 WWPDB D_1000016369 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1LXI _pdbx_database_related.details 'BMP7 crystal structure' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LX5 _pdbx_database_status.recvd_initial_deposition_date 2002-06-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Greenwald, J.' 1 'Groppe, J.' 2 'Kwiatkowski, W.' 3 'Choe, S.' 4 # _citation.id primary _citation.title ;The BMP7/ActRII Extracellular Domain Complex Provides New Insights into the Cooperative Nature of Receptor Assembly ; _citation.journal_abbrev Mol.Cell _citation.journal_volume 11 _citation.page_first 605 _citation.page_last 617 _citation.year 2003 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12667445 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(03)00094-7' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Greenwald, J.' 1 ? primary 'Groppe, J.' 2 ? primary 'Gray, P.' 3 ? primary 'Wiater, E.' 4 ? primary 'Kwiatkowski, W.' 5 ? primary 'Vale, W.' 6 ? primary 'Choe, S.' 7 ? # _cell.entry_id 1LX5 _cell.length_a 140.920 _cell.length_b 140.920 _cell.length_c 90.810 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1LX5 _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'bone morphogenetic protein 7' 15699.730 1 ? ? ? ? 2 polymer man 'Activin Type II Receptor' 12019.440 1 ? ? 'Extracellular Ligand Binding Domain, C-terminal truncation' ? 3 branched man ;alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-4)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1072.964 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'BMP7, Osteogenic protein 1, OP-1' 2 ACTR-II # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH ; ;STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH ; A ? 2 'polypeptide(L)' no no ;AILGRSETQECLFFNANWERDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCIEKKDSPE VYFCCCEGNMCNEKFSYFPEME ; ;AILGRSETQECLFFNANWERDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCIEKKDSPE VYFCCCEGNMCNEKFSYFPEME ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 GLY n 1 4 SER n 1 5 LYS n 1 6 GLN n 1 7 ARG n 1 8 SER n 1 9 GLN n 1 10 ASN n 1 11 ARG n 1 12 SER n 1 13 LYS n 1 14 THR n 1 15 PRO n 1 16 LYS n 1 17 ASN n 1 18 GLN n 1 19 GLU n 1 20 ALA n 1 21 LEU n 1 22 ARG n 1 23 MET n 1 24 ALA n 1 25 ASN n 1 26 VAL n 1 27 ALA n 1 28 GLU n 1 29 ASN n 1 30 SER n 1 31 SER n 1 32 SER n 1 33 ASP n 1 34 GLN n 1 35 ARG n 1 36 GLN n 1 37 ALA n 1 38 CYS n 1 39 LYS n 1 40 LYS n 1 41 HIS n 1 42 GLU n 1 43 LEU n 1 44 TYR n 1 45 VAL n 1 46 SER n 1 47 PHE n 1 48 ARG n 1 49 ASP n 1 50 LEU n 1 51 GLY n 1 52 TRP n 1 53 GLN n 1 54 ASP n 1 55 TRP n 1 56 ILE n 1 57 ILE n 1 58 ALA n 1 59 PRO n 1 60 GLU n 1 61 GLY n 1 62 TYR n 1 63 ALA n 1 64 ALA n 1 65 TYR n 1 66 TYR n 1 67 CYS n 1 68 GLU n 1 69 GLY n 1 70 GLU n 1 71 CYS n 1 72 ALA n 1 73 PHE n 1 74 PRO n 1 75 LEU n 1 76 ASN n 1 77 SER n 1 78 TYR n 1 79 MET n 1 80 ASN n 1 81 ALA n 1 82 THR n 1 83 ASN n 1 84 HIS n 1 85 ALA n 1 86 ILE n 1 87 VAL n 1 88 GLN n 1 89 THR n 1 90 LEU n 1 91 VAL n 1 92 HIS n 1 93 PHE n 1 94 ILE n 1 95 ASN n 1 96 PRO n 1 97 GLU n 1 98 THR n 1 99 VAL n 1 100 PRO n 1 101 LYS n 1 102 PRO n 1 103 CYS n 1 104 CYS n 1 105 ALA n 1 106 PRO n 1 107 THR n 1 108 GLN n 1 109 LEU n 1 110 ASN n 1 111 ALA n 1 112 ILE n 1 113 SER n 1 114 VAL n 1 115 LEU n 1 116 TYR n 1 117 PHE n 1 118 ASP n 1 119 ASP n 1 120 SER n 1 121 SER n 1 122 ASN n 1 123 VAL n 1 124 ILE n 1 125 LEU n 1 126 LYS n 1 127 LYS n 1 128 TYR n 1 129 ARG n 1 130 ASN n 1 131 MET n 1 132 VAL n 1 133 VAL n 1 134 ARG n 1 135 ALA n 1 136 CYS n 1 137 GLY n 1 138 CYS n 1 139 HIS n 2 1 ALA n 2 2 ILE n 2 3 LEU n 2 4 GLY n 2 5 ARG n 2 6 SER n 2 7 GLU n 2 8 THR n 2 9 GLN n 2 10 GLU n 2 11 CYS n 2 12 LEU n 2 13 PHE n 2 14 PHE n 2 15 ASN n 2 16 ALA n 2 17 ASN n 2 18 TRP n 2 19 GLU n 2 20 ARG n 2 21 ASP n 2 22 ARG n 2 23 THR n 2 24 ASN n 2 25 GLN n 2 26 THR n 2 27 GLY n 2 28 VAL n 2 29 GLU n 2 30 PRO n 2 31 CYS n 2 32 TYR n 2 33 GLY n 2 34 ASP n 2 35 LYS n 2 36 ASP n 2 37 LYS n 2 38 ARG n 2 39 ARG n 2 40 HIS n 2 41 CYS n 2 42 PHE n 2 43 ALA n 2 44 THR n 2 45 TRP n 2 46 LYS n 2 47 ASN n 2 48 ILE n 2 49 SER n 2 50 GLY n 2 51 SER n 2 52 ILE n 2 53 GLU n 2 54 ILE n 2 55 VAL n 2 56 LYS n 2 57 GLN n 2 58 GLY n 2 59 CYS n 2 60 TRP n 2 61 LEU n 2 62 ASP n 2 63 ASP n 2 64 ILE n 2 65 ASN n 2 66 CYS n 2 67 TYR n 2 68 ASP n 2 69 ARG n 2 70 THR n 2 71 ASP n 2 72 CYS n 2 73 ILE n 2 74 GLU n 2 75 LYS n 2 76 LYS n 2 77 ASP n 2 78 SER n 2 79 PRO n 2 80 GLU n 2 81 VAL n 2 82 TYR n 2 83 PHE n 2 84 CYS n 2 85 CYS n 2 86 CYS n 2 87 GLU n 2 88 GLY n 2 89 ASN n 2 90 MET n 2 91 CYS n 2 92 ASN n 2 93 GLU n 2 94 LYS n 2 95 PHE n 2 96 SER n 2 97 TYR n 2 98 PHE n 2 99 PRO n 2 100 GLU n 2 101 MET n 2 102 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo BMP7 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'Chinese hamster' 'Cricetulus griseus' 10029 Cricetulus ? ? ? ? ? ? ? ? ? ? 'OVARY CELLS' ? ? BACULOVIRUS ? ? ? ? ? DHFR- 2 1 sample ? ? ? 'house mouse' Mus ACVR2 ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Pichia pastoris' 4922 Pichia ? ? ? ? ? SMD1168 ? ? ? ? ? ? ? ? pPIC9K ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP BMP7_HUMAN 1 ;STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH ; 293 P18075 ? 2 UNP AVR2_MOUSE 2 ;AILGRSETQECLFFNANWERDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCIEKKDSPE VYFCCCEGNMCNEKFSYFPEME ; 20 P27038 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LX5 A 1 ? 139 ? P18075 293 ? 431 ? 1 139 2 2 1LX5 B 1 ? 102 ? P27038 20 ? 121 ? 1 102 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LX5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 73.79 _exptl_crystal.density_Matthews 4.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '1M sodium acetate, 0.1M imidazole, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 296K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2002-02-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.03 # _reflns.entry_id 1LX5 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 3.3 _reflns.d_resolution_low 30 _reflns.number_all 8320 _reflns.number_obs 8320 _reflns.percent_possible_obs 96.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 16.5 _reflns.B_iso_Wilson_estimate 145 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.d_res_high 3.3 _reflns_shell.d_res_low 3.42 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.332 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.entry_id 1LX5 _refine.ls_d_res_high 3.30 _refine.ls_d_res_low 27.12 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 8150 _refine.ls_number_reflns_obs 8150 _refine.ls_number_reflns_R_free 410 _refine.ls_percent_reflns_obs 96.71 _refine.ls_R_factor_all 0.24 _refine.ls_R_factor_obs 0.24 _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.279 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model isotropic _refine.B_iso_mean 69.6 _refine.aniso_B[1][1] -1.86 _refine.aniso_B[2][2] -1.86 _refine.aniso_B[3][3] 2.78 _refine.aniso_B[1][2] -0.93 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc 0.899 _refine.correlation_coeff_Fo_to_Fc_free 0.858 _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_overall_ESU_R 0.949 _refine.pdbx_overall_ESU_R_Free 0.435 _refine.overall_SU_ML 0.151 _refine.overall_SU_B 8.619 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1595 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 100 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1695 _refine_hist.d_res_high 3.30 _refine_hist.d_res_low 27.12 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.032 0.021 ? 1696 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.978 1.993 ? 2326 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.088 3.000 ? 196 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 24.949 15.000 ? 248 'X-RAY DIFFRACTION' ? r_chiral_restr 0.162 0.200 ? 265 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1262 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.342 0.300 ? 901 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.238 0.500 ? 190 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.372 0.300 ? 51 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.357 0.500 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.279 1.500 ? 988 'X-RAY DIFFRACTION' ? r_mcangle_it 2.512 2.000 ? 1582 'X-RAY DIFFRACTION' ? r_scbond_it 3.124 3.000 ? 708 'X-RAY DIFFRACTION' ? r_scangle_it 5.278 4.500 ? 744 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.30 _refine_ls_shell.d_res_low 3.386 _refine_ls_shell.number_reflns_R_work 566 _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.255 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1LX5 _struct.title 'Crystal Structure of the BMP7/ActRII Extracellular Domain Complex' _struct.pdbx_descriptor 'bone morphogenetic protein 7/Activin Type II Receptor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LX5 _struct_keywords.pdbx_keywords 'GROWTH FACTOR/GROWTH FACTOR RECEPTOR' _struct_keywords.text 'LIGAND-RECEPTOR COMPLEX, GROWTH FACTOR-GROWTH FACTOR RECEPTOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The second part of the biological assembly is generated by the two fold axis: y-x+1, y, -z+1' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 47 ? GLY A 51 ? PHE A 47 GLY A 51 1 ? 5 HELX_P HELX_P2 2 THR A 82 ? ASN A 95 ? THR A 82 ASN A 95 1 ? 14 HELX_P HELX_P3 3 ASN B 17 ? ARG B 22 ? ASN B 17 ARG B 22 1 ? 6 HELX_P HELX_P4 4 ASN B 47 ? SER B 51 ? ASN B 47 SER B 51 5 ? 5 HELX_P HELX_P5 5 ASP B 63 ? TYR B 67 ? ASP B 63 TYR B 67 5 ? 5 HELX_P HELX_P6 6 MET B 90 ? GLU B 93 ? MET B 90 GLU B 93 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 104 SG ? ? A CYS 38 A CYS 104 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf2 disulf ? ? A CYS 67 SG ? ? ? 1_555 A CYS 136 SG ? ? A CYS 67 A CYS 136 1_555 ? ? ? ? ? ? ? 2.076 ? ? disulf3 disulf ? ? A CYS 71 SG ? ? ? 1_555 A CYS 138 SG ? ? A CYS 71 A CYS 138 1_555 ? ? ? ? ? ? ? 2.075 ? ? disulf4 disulf ? ? A CYS 103 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 103 A CYS 103 11_656 ? ? ? ? ? ? ? 2.065 ? ? disulf5 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 41 SG ? ? B CYS 11 B CYS 41 1_555 ? ? ? ? ? ? ? 2.001 ? ? disulf6 disulf ? ? B CYS 31 SG ? ? ? 1_555 B CYS 59 SG ? ? B CYS 31 B CYS 59 1_555 ? ? ? ? ? ? ? 2.097 ? ? disulf7 disulf ? ? B CYS 66 SG ? ? ? 1_555 B CYS 85 SG ? ? B CYS 66 B CYS 85 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf8 disulf ? ? B CYS 72 SG ? ? ? 1_555 B CYS 84 SG ? ? B CYS 72 B CYS 84 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf9 disulf ? ? B CYS 86 SG ? ? ? 1_555 B CYS 91 SG ? ? B CYS 86 B CYS 91 1_555 ? ? ? ? ? ? ? 2.051 ? ? covale1 covale one ? A ASN 80 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 80 C NAG 1 1_555 ? ? ? ? ? ? ? 1.448 ? N-Glycosylation covale2 covale one ? B ASN 24 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 24 B NAG 124 1_555 ? ? ? ? ? ? ? 1.431 ? N-Glycosylation covale3 covale one ? B ASN 47 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 47 B NAG 147 1_555 ? ? ? ? ? ? ? 1.427 ? N-Glycosylation covale4 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale5 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.457 ? ? covale6 covale both ? C BMA . O3 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale7 covale both ? C BMA . O4 ? ? ? 1_555 C BMA . C1 ? ? C BMA 3 C BMA 5 1_555 ? ? ? ? ? ? ? 1.456 ? ? covale8 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 6 1_555 ? ? ? ? ? ? ? 1.440 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 58 A . ? ALA 58 A PRO 59 A ? PRO 59 A 1 3.00 2 PHE 73 A . ? PHE 73 A PRO 74 A ? PRO 74 A 1 -9.55 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 3 ? D ? 5 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel E 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 39 ? HIS A 41 ? LYS A 39 HIS A 41 A 2 TYR A 66 ? GLU A 68 ? TYR A 66 GLU A 68 B 1 TYR A 44 ? SER A 46 ? TYR A 44 SER A 46 B 2 GLY A 61 ? ALA A 63 ? GLY A 61 ALA A 63 C 1 ILE A 56 ? ALA A 58 ? ILE A 56 ALA A 58 C 2 CYS A 103 ? PHE A 117 ? CYS A 103 PHE A 117 C 3 VAL A 123 ? HIS A 139 ? VAL A 123 HIS A 139 D 1 THR B 26 ? PRO B 30 ? THR B 26 PRO B 30 D 2 GLU B 10 ? ASN B 15 ? GLU B 10 ASN B 15 D 3 GLU B 53 ? LEU B 61 ? GLU B 53 LEU B 61 D 4 ARG B 39 ? LYS B 46 ? ARG B 39 LYS B 46 D 5 TYR B 82 ? CYS B 86 ? TYR B 82 CYS B 86 E 1 CYS B 72 ? GLU B 74 ? CYS B 72 GLU B 74 E 2 PHE B 95 ? TYR B 97 ? PHE B 95 TYR B 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 39 ? N LYS A 39 O GLU A 68 ? O GLU A 68 B 1 2 N VAL A 45 ? N VAL A 45 O TYR A 62 ? O TYR A 62 C 1 2 N ALA A 58 ? N ALA A 58 O LEU A 115 ? O LEU A 115 C 2 3 N GLN A 108 ? N GLN A 108 O ARG A 134 ? O ARG A 134 D 1 2 O GLU B 29 ? O GLU B 29 N CYS B 11 ? N CYS B 11 D 2 3 N PHE B 14 ? N PHE B 14 O GLN B 57 ? O GLN B 57 D 3 4 O LYS B 56 ? O LYS B 56 N THR B 44 ? N THR B 44 D 4 5 N TRP B 45 ? N TRP B 45 O TYR B 82 ? O TYR B 82 E 1 2 N CYS B 72 ? N CYS B 72 O SER B 96 ? O SER B 96 # _database_PDB_matrix.entry_id 1LX5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LX5 _atom_sites.fract_transf_matrix[1][1] 0.007096 _atom_sites.fract_transf_matrix[1][2] 0.004097 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008194 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011012 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'ILE B 73 HAS WRONG CHIRALITY AT ATOM CB' 2 'NAG B 124 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 LYS 5 5 ? ? ? A . n A 1 6 GLN 6 6 ? ? ? A . n A 1 7 ARG 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 GLN 9 9 ? ? ? A . n A 1 10 ASN 10 10 ? ? ? A . n A 1 11 ARG 11 11 ? ? ? A . n A 1 12 SER 12 12 ? ? ? A . n A 1 13 LYS 13 13 ? ? ? A . n A 1 14 THR 14 14 ? ? ? A . n A 1 15 PRO 15 15 ? ? ? A . n A 1 16 LYS 16 16 ? ? ? A . n A 1 17 ASN 17 17 ? ? ? A . n A 1 18 GLN 18 18 ? ? ? A . n A 1 19 GLU 19 19 ? ? ? A . n A 1 20 ALA 20 20 ? ? ? A . n A 1 21 LEU 21 21 ? ? ? A . n A 1 22 ARG 22 22 ? ? ? A . n A 1 23 MET 23 23 ? ? ? A . n A 1 24 ALA 24 24 ? ? ? A . n A 1 25 ASN 25 25 ? ? ? A . n A 1 26 VAL 26 26 ? ? ? A . n A 1 27 ALA 27 27 ? ? ? A . n A 1 28 GLU 28 28 ? ? ? A . n A 1 29 ASN 29 29 ? ? ? A . n A 1 30 SER 30 30 ? ? ? A . n A 1 31 SER 31 31 ? ? ? A . n A 1 32 SER 32 32 ? ? ? A . n A 1 33 ASP 33 33 ? ? ? A . n A 1 34 GLN 34 34 ? ? ? A . n A 1 35 ARG 35 35 ? ? ? A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 TRP 55 55 55 TRP TRP A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 CYS 104 104 104 CYS CYS A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 MET 131 131 131 MET MET A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 CYS 136 136 136 CYS CYS A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 CYS 138 138 138 CYS CYS A . n A 1 139 HIS 139 139 139 HIS HIS A . n B 2 1 ALA 1 1 ? ? ? B . n B 2 2 ILE 2 2 ? ? ? B . n B 2 3 LEU 3 3 ? ? ? B . n B 2 4 GLY 4 4 ? ? ? B . n B 2 5 ARG 5 5 ? ? ? B . n B 2 6 SER 6 6 ? ? ? B . n B 2 7 GLU 7 7 7 GLU GLU B . n B 2 8 THR 8 8 8 THR THR B . n B 2 9 GLN 9 9 9 GLN GLN B . n B 2 10 GLU 10 10 10 GLU GLU B . n B 2 11 CYS 11 11 11 CYS CYS B . n B 2 12 LEU 12 12 12 LEU LEU B . n B 2 13 PHE 13 13 13 PHE PHE B . n B 2 14 PHE 14 14 14 PHE PHE B . n B 2 15 ASN 15 15 15 ASN ASN B . n B 2 16 ALA 16 16 16 ALA ALA B . n B 2 17 ASN 17 17 17 ASN ASN B . n B 2 18 TRP 18 18 18 TRP TRP B . n B 2 19 GLU 19 19 19 GLU GLU B . n B 2 20 ARG 20 20 20 ARG ARG B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 ARG 22 22 22 ARG ARG B . n B 2 23 THR 23 23 23 THR THR B . n B 2 24 ASN 24 24 24 ASN ASN B . n B 2 25 GLN 25 25 25 GLN GLN B . n B 2 26 THR 26 26 26 THR THR B . n B 2 27 GLY 27 27 27 GLY GLY B . n B 2 28 VAL 28 28 28 VAL VAL B . n B 2 29 GLU 29 29 29 GLU GLU B . n B 2 30 PRO 30 30 30 PRO PRO B . n B 2 31 CYS 31 31 31 CYS CYS B . n B 2 32 TYR 32 32 32 TYR TYR B . n B 2 33 GLY 33 33 33 GLY GLY B . n B 2 34 ASP 34 34 34 ASP ASP B . n B 2 35 LYS 35 35 35 LYS LYS B . n B 2 36 ASP 36 36 36 ASP ASP B . n B 2 37 LYS 37 37 37 LYS LYS B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 ARG 39 39 39 ARG ARG B . n B 2 40 HIS 40 40 40 HIS HIS B . n B 2 41 CYS 41 41 41 CYS CYS B . n B 2 42 PHE 42 42 42 PHE PHE B . n B 2 43 ALA 43 43 43 ALA ALA B . n B 2 44 THR 44 44 44 THR THR B . n B 2 45 TRP 45 45 45 TRP TRP B . n B 2 46 LYS 46 46 46 LYS LYS B . n B 2 47 ASN 47 47 47 ASN ASN B . n B 2 48 ILE 48 48 48 ILE ILE B . n B 2 49 SER 49 49 49 SER SER B . n B 2 50 GLY 50 50 50 GLY GLY B . n B 2 51 SER 51 51 51 SER SER B . n B 2 52 ILE 52 52 52 ILE ILE B . n B 2 53 GLU 53 53 53 GLU GLU B . n B 2 54 ILE 54 54 54 ILE ILE B . n B 2 55 VAL 55 55 55 VAL VAL B . n B 2 56 LYS 56 56 56 LYS LYS B . n B 2 57 GLN 57 57 57 GLN GLN B . n B 2 58 GLY 58 58 58 GLY GLY B . n B 2 59 CYS 59 59 59 CYS CYS B . n B 2 60 TRP 60 60 60 TRP TRP B . n B 2 61 LEU 61 61 61 LEU LEU B . n B 2 62 ASP 62 62 62 ASP ASP B . n B 2 63 ASP 63 63 63 ASP ASP B . n B 2 64 ILE 64 64 64 ILE ILE B . n B 2 65 ASN 65 65 65 ASN ASN B . n B 2 66 CYS 66 66 66 CYS CYS B . n B 2 67 TYR 67 67 67 TYR TYR B . n B 2 68 ASP 68 68 68 ASP ASP B . n B 2 69 ARG 69 69 69 ARG ARG B . n B 2 70 THR 70 70 70 THR THR B . n B 2 71 ASP 71 71 71 ASP ASP B . n B 2 72 CYS 72 72 72 CYS CYS B . n B 2 73 ILE 73 73 73 ILE ILE B . n B 2 74 GLU 74 74 74 GLU GLU B . n B 2 75 LYS 75 75 75 LYS LYS B . n B 2 76 LYS 76 76 76 LYS LYS B . n B 2 77 ASP 77 77 77 ASP ASP B . n B 2 78 SER 78 78 78 SER SER B . n B 2 79 PRO 79 79 79 PRO PRO B . n B 2 80 GLU 80 80 80 GLU GLU B . n B 2 81 VAL 81 81 81 VAL VAL B . n B 2 82 TYR 82 82 82 TYR TYR B . n B 2 83 PHE 83 83 83 PHE PHE B . n B 2 84 CYS 84 84 84 CYS CYS B . n B 2 85 CYS 85 85 85 CYS CYS B . n B 2 86 CYS 86 86 86 CYS CYS B . n B 2 87 GLU 87 87 87 GLU GLU B . n B 2 88 GLY 88 88 88 GLY GLY B . n B 2 89 ASN 89 89 89 ASN ASN B . n B 2 90 MET 90 90 90 MET MET B . n B 2 91 CYS 91 91 91 CYS CYS B . n B 2 92 ASN 92 92 92 ASN ASN B . n B 2 93 GLU 93 93 93 GLU GLU B . n B 2 94 LYS 94 94 94 LYS LYS B . n B 2 95 PHE 95 95 95 PHE PHE B . n B 2 96 SER 96 96 96 SER SER B . n B 2 97 TYR 97 97 97 TYR TYR B . n B 2 98 PHE 98 98 98 PHE PHE B . n B 2 99 PRO 99 99 99 PRO PRO B . n B 2 100 GLU 100 100 100 GLU GLU B . n B 2 101 MET 101 101 ? ? ? B . n B 2 102 GLU 102 102 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 124 124 NAG NAG B . E 4 NAG 1 147 147 NAG NAG B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 80 A ASN 80 ? ASN 'GLYCOSYLATION SITE' 2 B ASN 24 B ASN 24 ? ASN 'GLYCOSYLATION SITE' 3 B ASN 47 B ASN 47 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9240 ? 1 MORE 19 ? 1 'SSA (A^2)' 23220 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_656 -x+y+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 140.9200000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 90.8100000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-01 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2015-01-21 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Non-polymer description' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp 3 5 'Structure model' database_PDB_caveat 4 5 'Structure model' entity 5 5 'Structure model' pdbx_branch_scheme 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_entity_branch 8 5 'Structure model' pdbx_entity_branch_descriptor 9 5 'Structure model' pdbx_entity_branch_link 10 5 'Structure model' pdbx_entity_branch_list 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_nonpoly_scheme 13 5 'Structure model' pdbx_struct_assembly_gen 14 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 15 5 'Structure model' pdbx_validate_chiral 16 5 'Structure model' pdbx_validate_close_contact 17 5 'Structure model' struct_asym 18 5 'Structure model' struct_conn 19 5 'Structure model' struct_site 20 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_asym_id' 6 5 'Structure model' '_atom_site.auth_atom_id' 7 5 'Structure model' '_atom_site.auth_comp_id' 8 5 'Structure model' '_atom_site.auth_seq_id' 9 5 'Structure model' '_atom_site.label_asym_id' 10 5 'Structure model' '_atom_site.label_atom_id' 11 5 'Structure model' '_atom_site.label_comp_id' 12 5 'Structure model' '_atom_site.label_entity_id' 13 5 'Structure model' '_atom_site.type_symbol' 14 5 'Structure model' '_chem_comp.formula' 15 5 'Structure model' '_chem_comp.formula_weight' 16 5 'Structure model' '_chem_comp.id' 17 5 'Structure model' '_chem_comp.mon_nstd_flag' 18 5 'Structure model' '_chem_comp.name' 19 5 'Structure model' '_chem_comp.type' 20 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 21 5 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 22 5 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_2' 23 5 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 24 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 5 'Structure model' '_struct_conn.pdbx_role' 26 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 79.6058 35.7419 46.6469 0.3536 0.2030 0.1765 -0.0136 -0.0516 -0.0771 11.1753 3.0318 4.3349 2.9765 -4.2699 -1.3745 0.1544 -0.6758 -0.0741 0.6523 0.0301 -0.2111 0.0053 0.5906 -0.1845 'X-RAY DIFFRACTION' 2 ? refined 39.7127 51.4712 48.1483 0.3658 0.4955 0.3570 0.3626 -0.1133 0.0971 10.9636 11.8078 6.3631 -2.8195 -2.1549 3.0394 0.2772 0.7131 -0.1724 -1.0754 -0.3708 0.3208 -0.1584 -0.1821 0.0936 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 36 36 A 139 139 ? A A 'X-RAY DIFFRACTION' ? 2 2 B 9 9 B 100 100 ? B B 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 TRUNCATE 'data reduction' . ? 2 MLPHARE phasing . ? 3 REFMAC refinement 5.0 ? 4 HKL-2000 'data reduction' . ? 5 CCP4 'data scaling' '(TRUNCATE)' ? 6 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE SEQEUNCE FOR ACVR2 IS TRUNCATED. THE PROTEIN IN THE CRYSTAL ENDS AT GLU 102. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 118 ? ? N A ASN 122 ? ? 2.06 2 1 CG B ASN 24 ? ? C1 B NAG 124 ? ? 2.13 3 1 ND2 A ASN 80 ? ? C2 C NAG 1 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE2 B GLU 93 ? ? 1_555 OE2 B GLU 93 ? ? 4_765 1.86 2 1 CD B GLU 93 ? ? 1_555 OE2 B GLU 93 ? ? 4_765 2.02 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A LYS 39 ? ? CG A LYS 39 ? ? 1.904 1.521 0.383 0.027 N 2 1 CB A ASP 54 ? ? CG A ASP 54 ? ? 2.757 1.513 1.244 0.021 N 3 1 CG A GLU 60 ? ? CD A GLU 60 ? ? 1.622 1.515 0.107 0.015 N 4 1 CA A ALA 63 ? ? CB A ALA 63 ? ? 1.359 1.520 -0.161 0.021 N 5 1 CB A PHE 73 ? ? CG A PHE 73 ? ? 1.660 1.509 0.151 0.017 N 6 1 CB A TYR 78 ? ? CG A TYR 78 ? ? 2.017 1.512 0.505 0.015 N 7 1 CA A ILE 112 ? ? CB A ILE 112 ? ? 1.400 1.544 -0.144 0.023 N 8 1 CB A ARG 129 ? ? CG A ARG 129 ? ? 1.206 1.521 -0.315 0.027 N 9 1 CB B LYS 35 ? ? CG B LYS 35 ? ? 1.215 1.521 -0.306 0.027 N 10 1 CB B LYS 94 ? ? CG B LYS 94 ? ? 1.931 1.521 0.410 0.027 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LYS 39 ? ? CB A LYS 39 ? ? CG A LYS 39 ? ? 99.34 113.40 -14.06 2.20 N 2 1 CA A ASP 54 ? ? CB A ASP 54 ? ? CG A ASP 54 ? ? 93.99 113.40 -19.41 2.20 N 3 1 CB A ASP 54 ? ? CG A ASP 54 ? ? OD1 A ASP 54 ? ? 109.98 118.30 -8.32 0.90 N 4 1 N A PRO 74 ? ? CA A PRO 74 ? ? C A PRO 74 ? ? 96.19 112.10 -15.91 2.60 N 5 1 CA A TYR 78 ? ? CB A TYR 78 ? ? CG A TYR 78 ? ? 126.99 113.40 13.59 1.90 N 6 1 CA A LEU 90 ? ? CB A LEU 90 ? ? CG A LEU 90 ? ? 140.16 115.30 24.86 2.30 N 7 1 N A PRO 96 ? ? CD A PRO 96 ? ? CG A PRO 96 ? ? 93.50 103.20 -9.70 1.50 N 8 1 CB A ASP 118 ? ? CG A ASP 118 ? ? OD1 A ASP 118 ? ? 124.35 118.30 6.05 0.90 N 9 1 CA A ARG 129 ? ? CB A ARG 129 ? ? CG A ARG 129 ? ? 148.35 113.40 34.95 2.20 N 10 1 CB B ASP 21 ? ? CG B ASP 21 ? ? OD2 B ASP 21 ? ? 124.36 118.30 6.06 0.90 N 11 1 CB B ASP 36 ? ? CG B ASP 36 ? ? OD2 B ASP 36 ? ? 123.80 118.30 5.50 0.90 N 12 1 CA B LYS 37 ? ? CB B LYS 37 ? ? CG B LYS 37 ? ? 130.49 113.40 17.09 2.20 N 13 1 CB B ASP 62 ? ? CG B ASP 62 ? ? OD2 B ASP 62 ? ? 124.41 118.30 6.11 0.90 N 14 1 CB B ASP 68 ? ? CG B ASP 68 ? ? OD2 B ASP 68 ? ? 124.20 118.30 5.90 0.90 N 15 1 CA B ILE 73 ? ? CB B ILE 73 ? ? CG1 B ILE 73 ? ? 124.94 111.00 13.94 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 43 ? ? -166.36 118.25 2 1 ARG A 48 ? ? -48.21 -75.18 3 1 ALA A 58 ? ? -171.13 146.44 4 1 TYR A 65 ? ? 75.57 179.78 5 1 GLU A 68 ? ? 175.90 143.13 6 1 PHE A 73 ? ? -37.68 130.35 7 1 SER A 77 ? ? -58.34 175.39 8 1 ASN A 80 ? ? 25.03 59.15 9 1 ILE A 94 ? ? -82.09 -91.21 10 1 PRO A 96 ? ? -54.34 -6.39 11 1 THR A 98 ? ? -89.51 -82.95 12 1 GLN A 108 ? ? -160.84 117.90 13 1 LYS B 35 ? ? -8.00 77.75 14 1 ASP B 36 ? ? -160.42 -62.61 15 1 ILE B 48 ? ? -63.73 98.50 16 1 SER B 49 ? ? 41.99 72.07 17 1 LEU B 61 ? ? -35.56 147.59 18 1 ASP B 62 ? ? -30.35 122.94 19 1 ILE B 64 ? ? -57.94 -6.67 20 1 CYS B 66 ? ? -105.09 62.94 21 1 MET B 90 ? ? 46.73 22.37 22 1 PHE B 98 ? ? -152.58 82.75 23 1 PRO B 99 ? ? -38.22 160.85 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 78 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.111 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CB ? B ILE 73 ? PLANAR . 2 1 C1 ? B NAG 124 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLU 7 ? CG ? B GLU 7 CG 2 1 Y 1 B GLU 7 ? CD ? B GLU 7 CD 3 1 Y 1 B GLU 7 ? OE1 ? B GLU 7 OE1 4 1 Y 1 B GLU 7 ? OE2 ? B GLU 7 OE2 5 1 Y 1 B GLU 100 ? CG ? B GLU 100 CG 6 1 Y 1 B GLU 100 ? CD ? B GLU 100 CD 7 1 Y 1 B GLU 100 ? OE1 ? B GLU 100 OE1 8 1 Y 1 B GLU 100 ? OE2 ? B GLU 100 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A LYS 5 ? A LYS 5 6 1 Y 1 A GLN 6 ? A GLN 6 7 1 Y 1 A ARG 7 ? A ARG 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 A GLN 9 ? A GLN 9 10 1 Y 1 A ASN 10 ? A ASN 10 11 1 Y 1 A ARG 11 ? A ARG 11 12 1 Y 1 A SER 12 ? A SER 12 13 1 Y 1 A LYS 13 ? A LYS 13 14 1 Y 1 A THR 14 ? A THR 14 15 1 Y 1 A PRO 15 ? A PRO 15 16 1 Y 1 A LYS 16 ? A LYS 16 17 1 Y 1 A ASN 17 ? A ASN 17 18 1 Y 1 A GLN 18 ? A GLN 18 19 1 Y 1 A GLU 19 ? A GLU 19 20 1 Y 1 A ALA 20 ? A ALA 20 21 1 Y 1 A LEU 21 ? A LEU 21 22 1 Y 1 A ARG 22 ? A ARG 22 23 1 Y 1 A MET 23 ? A MET 23 24 1 Y 1 A ALA 24 ? A ALA 24 25 1 Y 1 A ASN 25 ? A ASN 25 26 1 Y 1 A VAL 26 ? A VAL 26 27 1 Y 1 A ALA 27 ? A ALA 27 28 1 Y 1 A GLU 28 ? A GLU 28 29 1 Y 1 A ASN 29 ? A ASN 29 30 1 Y 1 A SER 30 ? A SER 30 31 1 Y 1 A SER 31 ? A SER 31 32 1 Y 1 A SER 32 ? A SER 32 33 1 Y 1 A ASP 33 ? A ASP 33 34 1 Y 1 A GLN 34 ? A GLN 34 35 1 Y 1 A ARG 35 ? A ARG 35 36 1 Y 1 B ALA 1 ? B ALA 1 37 1 Y 1 B ILE 2 ? B ILE 2 38 1 Y 1 B LEU 3 ? B LEU 3 39 1 Y 1 B GLY 4 ? B GLY 4 40 1 Y 1 B ARG 5 ? B ARG 5 41 1 Y 1 B SER 6 ? B SER 6 42 1 Y 1 B MET 101 ? B MET 101 43 1 Y 1 B GLU 102 ? B GLU 102 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 C NAG 1 C NAG 180 n C 3 NAG 2 C NAG 2 C NAG 181 n C 3 BMA 3 C BMA 3 C MAN 182 n C 3 MAN 4 C MAN 4 C MAN 183 n C 3 BMA 5 C BMA 5 C MAN 185 n C 3 MAN 6 C MAN 6 C MAN 184 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'DManpa1-3[DManpb1-4][DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/3,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-2-3/a4-b1_b4-c1_c3-d1_c4-e1_c6-f1' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(4+1)][b-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 3 5 BMA C1 O1 3 BMA O4 HO4 sing ? 5 3 6 MAN C1 O1 3 BMA O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 3 MAN 4 n 3 BMA 5 n 3 MAN 6 n # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG #