HEADER VIRAL PROTEIN 04-JUN-02 1LX8 TITLE REGULATION OF DIRECTIONALITY IN BACTERIOPHAGE LAMBDA SITE-SPECIFIC TITLE 2 RECOMBINATION: STRUCTURE OF THE XIS PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCISIONASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: XIS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 GENE: XIS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RJ3386 (BL21-DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD33 KEYWDS DNA ARCHITECTURAL PROTEIN, 'WINGED'-HELIX PROTEIN, PHAGE EXCISION, KEYWDS 2 SITE-SPECIFIC DNA RECOMBINATION, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.D.SAM,C.PAPAGIANNIS,K.M.CONNOLLY,L.CORSELLI,J.IWAHARA,J.LEE, AUTHOR 2 M.PHILLIPS,J.M.WOJCIAK,R.C.JOHNSON,R.T.CLUBB REVDAT 4 22-MAY-24 1LX8 1 REMARK REVDAT 3 27-OCT-21 1LX8 1 REMARK SEQADV REVDAT 2 24-FEB-09 1LX8 1 VERSN REVDAT 1 10-JUN-03 1LX8 0 JRNL AUTH M.D.SAM,C.PAPAGIANNIS,K.M.CONNOLLY,L.CORSELLI,J.IWAHARA, JRNL AUTH 2 J.LEE,M.PHILLIPS,J.M.WOJCIAK,R.C.JOHNSON,R.T.CLUBB JRNL TITL REGULATION OF DIRECTIONALITY IN BACTERIOPHAGE LAMBDA JRNL TITL 2 SITE-SPECIFIC RECOMBINATION: STRUCTURE OF THE XIS PROTEIN JRNL REF J.MOL.BIOL. V. 324 791 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12460578 JRNL DOI 10.1016/S0022-2836(02)01150-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER, 1993 (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LX8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016372. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM XIS, 15N/13C LABELED REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNCA-J; REMARK 210 4D_13C/15N-SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE SGI6X, REMARK 210 NMRVIEW 4.1.3 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY AND REMARK 210 SIMULATED ANNEALING CALCULATIONS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 37 H ARG A 39 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 2 -154.50 -85.26 REMARK 500 1 PRO A 33 157.58 -41.82 REMARK 500 1 ASP A 37 66.25 -65.60 REMARK 500 1 ARG A 39 -25.07 -145.06 REMARK 500 1 ASP A 51 -92.32 -102.20 REMARK 500 1 LEU A 52 -76.46 -132.95 REMARK 500 1 ASN A 53 62.34 -168.94 REMARK 500 1 ARG A 54 71.69 -160.07 REMARK 500 2 ALA A 10 0.18 -60.49 REMARK 500 2 PRO A 15 -157.36 -83.88 REMARK 500 2 ARG A 16 -135.61 -148.05 REMARK 500 2 ASP A 37 65.62 -65.61 REMARK 500 2 HIS A 44 152.97 -40.48 REMARK 500 2 SER A 46 25.32 -151.46 REMARK 500 2 ASP A 51 -100.41 -104.64 REMARK 500 2 ARG A 54 77.56 53.85 REMARK 500 3 ARG A 14 68.49 -151.74 REMARK 500 3 ASP A 37 66.15 -65.43 REMARK 500 3 ARG A 39 -26.93 -145.96 REMARK 500 3 GLU A 45 0.41 -62.37 REMARK 500 3 ASP A 51 -120.36 -153.21 REMARK 500 3 LEU A 52 28.33 179.53 REMARK 500 4 TYR A 2 137.44 -171.93 REMARK 500 4 ARG A 14 77.47 -151.67 REMARK 500 4 ARG A 16 -145.76 -150.50 REMARK 500 4 SER A 28 41.18 74.06 REMARK 500 4 PHE A 31 129.36 -170.59 REMARK 500 4 ASP A 37 66.39 -65.84 REMARK 500 4 ARG A 39 -29.10 -145.21 REMARK 500 4 HIS A 44 167.75 -43.57 REMARK 500 4 GLU A 45 30.27 -81.44 REMARK 500 4 SER A 46 13.78 -144.79 REMARK 500 4 ASP A 51 -101.39 -151.67 REMARK 500 4 LEU A 52 -85.50 -132.46 REMARK 500 4 ASN A 53 -46.60 -175.96 REMARK 500 4 ARG A 54 152.74 -45.80 REMARK 500 5 GLN A 6 -73.11 -44.83 REMARK 500 5 ARG A 16 -133.04 -150.71 REMARK 500 5 ASP A 37 65.84 -65.23 REMARK 500 5 ARG A 39 -29.45 -142.34 REMARK 500 5 ASP A 51 -79.57 -121.61 REMARK 500 5 LEU A 52 -85.44 -130.88 REMARK 500 6 ALA A 10 0.92 -59.70 REMARK 500 6 PRO A 33 157.39 -44.77 REMARK 500 6 ASP A 37 67.34 -64.54 REMARK 500 6 ARG A 39 -28.18 -146.06 REMARK 500 6 HIS A 44 -99.67 -51.72 REMARK 500 6 GLU A 45 -37.17 -156.95 REMARK 500 6 SER A 46 1.19 -68.23 REMARK 500 6 ASP A 51 -109.87 -159.54 REMARK 500 REMARK 500 THIS ENTRY HAS 173 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1LX8 A 1 55 UNP P03699 VXIS_LAMBD 1 55 SEQADV 1LX8 SER A 28 UNP P03699 CYS 28 ENGINEERED MUTATION SEQRES 1 A 55 MET TYR LEU THR LEU GLN GLU TRP ASN ALA ARG GLN ARG SEQRES 2 A 55 ARG PRO ARG SER LEU GLU THR VAL ARG ARG TRP VAL ARG SEQRES 3 A 55 GLU SER ARG ILE PHE PRO PRO PRO VAL LYS ASP GLY ARG SEQRES 4 A 55 GLU TYR LEU PHE HIS GLU SER ALA VAL LYS VAL ASP LEU SEQRES 5 A 55 ASN ARG PRO HELIX 1 1 THR A 4 ARG A 11 1 8 HELIX 2 2 SER A 17 GLU A 27 1 11 SHEET 1 A 2 ILE A 30 PHE A 31 0 SHEET 2 A 2 VAL A 48 LYS A 49 -1 O VAL A 48 N PHE A 31 SHEET 1 B 2 VAL A 35 ASP A 37 0 SHEET 2 B 2 GLU A 40 LEU A 42 -1 O LEU A 42 N VAL A 35 CISPEP 1 PHE A 31 PRO A 32 1 -0.71 CISPEP 2 PHE A 31 PRO A 32 2 -0.51 CISPEP 3 PHE A 31 PRO A 32 3 -0.70 CISPEP 4 PHE A 31 PRO A 32 4 -1.16 CISPEP 5 PHE A 31 PRO A 32 5 -1.28 CISPEP 6 PHE A 31 PRO A 32 6 -1.01 CISPEP 7 PHE A 31 PRO A 32 7 -0.74 CISPEP 8 PHE A 31 PRO A 32 8 -0.35 CISPEP 9 PHE A 31 PRO A 32 9 -0.14 CISPEP 10 PHE A 31 PRO A 32 10 -0.74 CISPEP 11 PHE A 31 PRO A 32 11 -0.99 CISPEP 12 PHE A 31 PRO A 32 12 -0.67 CISPEP 13 PHE A 31 PRO A 32 13 -0.68 CISPEP 14 PHE A 31 PRO A 32 14 -0.73 CISPEP 15 PHE A 31 PRO A 32 15 -1.07 CISPEP 16 PHE A 31 PRO A 32 16 -1.15 CISPEP 17 PHE A 31 PRO A 32 17 -1.12 CISPEP 18 PHE A 31 PRO A 32 18 -0.53 CISPEP 19 PHE A 31 PRO A 32 19 -0.79 CISPEP 20 PHE A 31 PRO A 32 20 -0.92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1