HEADER PHOSPHORYLATION 05-MAR-97 1LXD TITLE CRYSTAL STRUCTURE OF THE RAS INTERACTING DOMAIN OF RALGDS, A GUANINE TITLE 2 NUCLEOTIDE DISSOCIATION STIMULATOR OF RAL PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RALGDSB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN WHICH BINDS TO ACTIVE RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RALGDS C-TERMINAL DOMAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5-ALPHA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX98 FROM PGEX2T; SOURCE 10 EXPRESSION_SYSTEM_GENE: C-TERMINAL DOMAIN OF RALGDS FUSED TO SOURCE 11 GLUTATHIONINE S TRANSFERASE KEYWDS PHOSPHORYLATION, RALGDS, RAS BINDING, UBIQUITIN FOLD, CDC25 FAMILY, KEYWDS 2 SIGNAL TRANSDUCTION, CROSS-TALK EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,X.W.WENG,F.HOFER,G.S.MARTIN,S.H.KIM REVDAT 3 16-OCT-24 1LXD 1 SEQADV REVDAT 2 24-FEB-09 1LXD 1 VERSN REVDAT 1 11-MAR-98 1LXD 0 JRNL AUTH L.HUANG,X.WENG,F.HOFER,G.S.MARTIN,S.H.KIM JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE RAS-INTERACTING DOMAIN OF JRNL TITL 2 RALGDS. JRNL REF NAT.STRUCT.BIOL. V. 4 609 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9253406 JRNL DOI 10.1038/NSB0897-609 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.HUANG,J.JANCARIK,S.-H.KIM,F.HOFER,G.S.MARTIN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 THE RAS BINDING DOMAIN OF RALGDS, A GUANINE NUCLEOTIDE REMARK 1 TITL 3 DISSOCIATION STIMULATOR OF THE RAL PROTEIN REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 52 1033 1996 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.HOFER,S.FIELDS,C.SCHNEIDER,G.S.MARTIN REMARK 1 TITL ACTIVATED RAS INTERACTS WITH THE RAL GUANINE NUCLEOTIDE REMARK 1 TITL 2 DISSOCIATION STIMULATOR REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 11089 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.85 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 15000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 6209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.040 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 408 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.045 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 2.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NO RESTRAINTS. REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : P19.PRO REMARK 3 PARAMETER FILE 2 : P11.WAT REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : X19.PRO REMARK 3 TOPOLOGY FILE 2 : H11.WAT REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: H19A.PEP IS THE PEPTIDE BOND FIL REMARK 4 REMARK 4 1LXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6485 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25100 REMARK 200 FOR SHELL : 5.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MADSYS, X-PLOR 3.85 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIS STRUCTURE WAS SOLVED USING THE MAD DATA ON THE REMARK 200 SELENOMETHIONINE MUTANT OF THE PROTEIN AT X4A NSLS. BUT THE REMARK 200 STRUCTURE WAS REFINED AGAINST THE NATIVE DATA ABOVE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 20% PEG REMARK 280 8000, 0.1 M TRIS PH 8.5, AND 0.2 M CALCIUM ACETATE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.64100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.35700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.64100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.35700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 PRO A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 ASN A 10 REMARK 465 GLN A 11 REMARK 465 GLN A 12 REMARK 465 VAL A 13 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 LEU B 6 REMARK 465 PRO B 7 REMARK 465 LEU B 8 REMARK 465 TYR B 9 REMARK 465 ASN B 10 REMARK 465 GLN B 11 REMARK 465 GLN B 12 REMARK 465 VAL B 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 53 NE2 HIS A 53 CD2 -0.076 REMARK 500 GLU A 59 CD GLU A 59 OE2 -0.067 REMARK 500 HIS A 73 NE2 HIS A 73 CD2 -0.070 REMARK 500 HIS B 53 NE2 HIS B 53 CD2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 16 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 ASN A 29 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 58 N - CA - C ANGL. DEV. = 20.0 DEGREES REMARK 500 ASP A 58 CA - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 CYS B 16 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP B 26 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASN B 27 N - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 ASN B 29 OD1 - CG - ND2 ANGL. DEV. = -16.6 DEGREES REMARK 500 ASN B 29 CB - CG - ND2 ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG B 47 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 65 CA - C - N ANGL. DEV. = 22.8 DEGREES REMARK 500 LEU B 65 O - C - N ANGL. DEV. = -19.2 DEGREES REMARK 500 ARG B 100 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 -31.29 -37.26 REMARK 500 ASN A 29 -110.04 42.77 REMARK 500 ASP A 58 150.71 55.31 REMARK 500 GLU A 59 138.17 -8.52 REMARK 500 ASN A 82 108.90 -58.87 REMARK 500 TYR A 93 38.98 -64.98 REMARK 500 VAL B 25 -100.05 -99.09 REMARK 500 ASN B 27 28.74 -30.11 REMARK 500 SER B 38 -35.64 -29.94 REMARK 500 LEU B 66 67.36 98.50 REMARK 500 ASP B 72 -4.77 66.25 REMARK 500 ASN B 92 123.67 -39.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 29 MET A 30 -148.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 93 0.10 SIDE CHAIN REMARK 500 TYR B 31 0.07 SIDE CHAIN REMARK 500 TYR B 63 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 TERMINAL RESIDUE LYS 100 IN THE PDB FILE IS LYS 864 REMARK 999 IN THE RAT RALGDS SEQUENCE. DBREF 1LXD A 1 100 UNP Q03386 GNDS_RAT 694 864 DBREF 1LXD B 1 100 UNP Q03386 GNDS_RAT 694 864 SEQADV 1LXD A UNP Q03386 SER 696 DELETION SEQADV 1LXD A UNP Q03386 THR 697 DELETION SEQADV 1LXD A UNP Q03386 SER 698 DELETION SEQADV 1LXD A UNP Q03386 ASP 699 DELETION SEQADV 1LXD A UNP Q03386 VAL 700 DELETION SEQADV 1LXD A UNP Q03386 GLU 701 DELETION SEQADV 1LXD A UNP Q03386 GLU 702 DELETION SEQADV 1LXD A UNP Q03386 ILE 703 DELETION SEQADV 1LXD A UNP Q03386 ASN 704 DELETION SEQADV 1LXD A UNP Q03386 MET 705 DELETION SEQADV 1LXD A UNP Q03386 SER 706 DELETION SEQADV 1LXD A UNP Q03386 PHE 707 DELETION SEQADV 1LXD A UNP Q03386 VAL 708 DELETION SEQADV 1LXD A UNP Q03386 PRO 709 DELETION SEQADV 1LXD A UNP Q03386 GLU 710 DELETION SEQADV 1LXD A UNP Q03386 SER 711 DELETION SEQADV 1LXD A UNP Q03386 PRO 712 DELETION SEQADV 1LXD A UNP Q03386 ASP 713 DELETION SEQADV 1LXD A UNP Q03386 GLY 714 DELETION SEQADV 1LXD A UNP Q03386 GLN 715 DELETION SEQADV 1LXD A UNP Q03386 GLU 716 DELETION SEQADV 1LXD A UNP Q03386 LYS 717 DELETION SEQADV 1LXD A UNP Q03386 LYS 718 DELETION SEQADV 1LXD A UNP Q03386 PHE 719 DELETION SEQADV 1LXD A UNP Q03386 TRP 720 DELETION SEQADV 1LXD A UNP Q03386 GLU 721 DELETION SEQADV 1LXD A UNP Q03386 SER 722 DELETION SEQADV 1LXD A UNP Q03386 ALA 723 DELETION SEQADV 1LXD A UNP Q03386 SER 724 DELETION SEQADV 1LXD A UNP Q03386 GLN 725 DELETION SEQADV 1LXD A UNP Q03386 SER 726 DELETION SEQADV 1LXD A UNP Q03386 SER 727 DELETION SEQADV 1LXD A UNP Q03386 PRO 728 DELETION SEQADV 1LXD A UNP Q03386 GLU 729 DELETION SEQADV 1LXD A UNP Q03386 THR 730 DELETION SEQADV 1LXD A UNP Q03386 SER 731 DELETION SEQADV 1LXD A UNP Q03386 GLY 732 DELETION SEQADV 1LXD A UNP Q03386 ILE 733 DELETION SEQADV 1LXD A UNP Q03386 SER 734 DELETION SEQADV 1LXD A UNP Q03386 SER 735 DELETION SEQADV 1LXD A UNP Q03386 ALA 736 DELETION SEQADV 1LXD A UNP Q03386 SER 737 DELETION SEQADV 1LXD A UNP Q03386 SER 738 DELETION SEQADV 1LXD A UNP Q03386 SER 739 DELETION SEQADV 1LXD A UNP Q03386 THR 740 DELETION SEQADV 1LXD A UNP Q03386 SER 741 DELETION SEQADV 1LXD A UNP Q03386 SER 742 DELETION SEQADV 1LXD A UNP Q03386 SER 743 DELETION SEQADV 1LXD A UNP Q03386 SER 744 DELETION SEQADV 1LXD A UNP Q03386 ALA 745 DELETION SEQADV 1LXD A UNP Q03386 SER 746 DELETION SEQADV 1LXD A UNP Q03386 THR 747 DELETION SEQADV 1LXD A UNP Q03386 THR 748 DELETION SEQADV 1LXD A UNP Q03386 PRO 749 DELETION SEQADV 1LXD A UNP Q03386 VAL 750 DELETION SEQADV 1LXD A UNP Q03386 SER 751 DELETION SEQADV 1LXD A UNP Q03386 THR 752 DELETION SEQADV 1LXD A UNP Q03386 THR 753 DELETION SEQADV 1LXD A UNP Q03386 ARG 754 DELETION SEQADV 1LXD A UNP Q03386 THR 755 DELETION SEQADV 1LXD A UNP Q03386 HIS 756 DELETION SEQADV 1LXD A UNP Q03386 LYS 757 DELETION SEQADV 1LXD A UNP Q03386 ARG 758 DELETION SEQADV 1LXD A UNP Q03386 SER 759 DELETION SEQADV 1LXD A UNP Q03386 VAL 760 DELETION SEQADV 1LXD A UNP Q03386 SER 761 DELETION SEQADV 1LXD A UNP Q03386 GLY 762 DELETION SEQADV 1LXD A UNP Q03386 VAL 763 DELETION SEQADV 1LXD A UNP Q03386 CYS 764 DELETION SEQADV 1LXD A UNP Q03386 SER 765 DELETION SEQADV 1LXD A UNP Q03386 TYR 766 DELETION SEQADV 1LXD B UNP Q03386 SER 696 DELETION SEQADV 1LXD B UNP Q03386 THR 697 DELETION SEQADV 1LXD B UNP Q03386 SER 698 DELETION SEQADV 1LXD B UNP Q03386 ASP 699 DELETION SEQADV 1LXD B UNP Q03386 VAL 700 DELETION SEQADV 1LXD B UNP Q03386 GLU 701 DELETION SEQADV 1LXD B UNP Q03386 GLU 702 DELETION SEQADV 1LXD B UNP Q03386 ILE 703 DELETION SEQADV 1LXD B UNP Q03386 ASN 704 DELETION SEQADV 1LXD B UNP Q03386 MET 705 DELETION SEQADV 1LXD B UNP Q03386 SER 706 DELETION SEQADV 1LXD B UNP Q03386 PHE 707 DELETION SEQADV 1LXD B UNP Q03386 VAL 708 DELETION SEQADV 1LXD B UNP Q03386 PRO 709 DELETION SEQADV 1LXD B UNP Q03386 GLU 710 DELETION SEQADV 1LXD B UNP Q03386 SER 711 DELETION SEQADV 1LXD B UNP Q03386 PRO 712 DELETION SEQADV 1LXD B UNP Q03386 ASP 713 DELETION SEQADV 1LXD B UNP Q03386 GLY 714 DELETION SEQADV 1LXD B UNP Q03386 GLN 715 DELETION SEQADV 1LXD B UNP Q03386 GLU 716 DELETION SEQADV 1LXD B UNP Q03386 LYS 717 DELETION SEQADV 1LXD B UNP Q03386 LYS 718 DELETION SEQADV 1LXD B UNP Q03386 PHE 719 DELETION SEQADV 1LXD B UNP Q03386 TRP 720 DELETION SEQADV 1LXD B UNP Q03386 GLU 721 DELETION SEQADV 1LXD B UNP Q03386 SER 722 DELETION SEQADV 1LXD B UNP Q03386 ALA 723 DELETION SEQADV 1LXD B UNP Q03386 SER 724 DELETION SEQADV 1LXD B UNP Q03386 GLN 725 DELETION SEQADV 1LXD B UNP Q03386 SER 726 DELETION SEQADV 1LXD B UNP Q03386 SER 727 DELETION SEQADV 1LXD B UNP Q03386 PRO 728 DELETION SEQADV 1LXD B UNP Q03386 GLU 729 DELETION SEQADV 1LXD B UNP Q03386 THR 730 DELETION SEQADV 1LXD B UNP Q03386 SER 731 DELETION SEQADV 1LXD B UNP Q03386 GLY 732 DELETION SEQADV 1LXD B UNP Q03386 ILE 733 DELETION SEQADV 1LXD B UNP Q03386 SER 734 DELETION SEQADV 1LXD B UNP Q03386 SER 735 DELETION SEQADV 1LXD B UNP Q03386 ALA 736 DELETION SEQADV 1LXD B UNP Q03386 SER 737 DELETION SEQADV 1LXD B UNP Q03386 SER 738 DELETION SEQADV 1LXD B UNP Q03386 SER 739 DELETION SEQADV 1LXD B UNP Q03386 THR 740 DELETION SEQADV 1LXD B UNP Q03386 SER 741 DELETION SEQADV 1LXD B UNP Q03386 SER 742 DELETION SEQADV 1LXD B UNP Q03386 SER 743 DELETION SEQADV 1LXD B UNP Q03386 SER 744 DELETION SEQADV 1LXD B UNP Q03386 ALA 745 DELETION SEQADV 1LXD B UNP Q03386 SER 746 DELETION SEQADV 1LXD B UNP Q03386 THR 747 DELETION SEQADV 1LXD B UNP Q03386 THR 748 DELETION SEQADV 1LXD B UNP Q03386 PRO 749 DELETION SEQADV 1LXD B UNP Q03386 VAL 750 DELETION SEQADV 1LXD B UNP Q03386 SER 751 DELETION SEQADV 1LXD B UNP Q03386 THR 752 DELETION SEQADV 1LXD B UNP Q03386 THR 753 DELETION SEQADV 1LXD B UNP Q03386 ARG 754 DELETION SEQADV 1LXD B UNP Q03386 THR 755 DELETION SEQADV 1LXD B UNP Q03386 HIS 756 DELETION SEQADV 1LXD B UNP Q03386 LYS 757 DELETION SEQADV 1LXD B UNP Q03386 ARG 758 DELETION SEQADV 1LXD B UNP Q03386 SER 759 DELETION SEQADV 1LXD B UNP Q03386 VAL 760 DELETION SEQADV 1LXD B UNP Q03386 SER 761 DELETION SEQADV 1LXD B UNP Q03386 GLY 762 DELETION SEQADV 1LXD B UNP Q03386 VAL 763 DELETION SEQADV 1LXD B UNP Q03386 CYS 764 DELETION SEQADV 1LXD B UNP Q03386 SER 765 DELETION SEQADV 1LXD B UNP Q03386 TYR 766 DELETION SEQRES 1 A 100 GLY SER SER SER SER LEU PRO LEU TYR ASN GLN GLN VAL SEQRES 2 A 100 GLY ASP CYS CYS ILE ILE ARG VAL SER LEU ASP VAL ASP SEQRES 3 A 100 ASN GLY ASN MET TYR LYS SER ILE LEU VAL THR SER GLN SEQRES 4 A 100 ASP LYS ALA PRO THR VAL ILE ARG LYS ALA MET ASP LYS SEQRES 5 A 100 HIS ASN LEU ASP GLU ASP GLU PRO GLU ASP TYR GLU LEU SEQRES 6 A 100 LEU GLN ILE ILE SER GLU ASP HIS LYS LEU LYS ILE PRO SEQRES 7 A 100 GLU ASN ALA ASN VAL PHE TYR ALA MET ASN SER ALA ALA SEQRES 8 A 100 ASN TYR ASP PHE ILE LEU LYS LYS ARG SEQRES 1 B 100 GLY SER SER SER SER LEU PRO LEU TYR ASN GLN GLN VAL SEQRES 2 B 100 GLY ASP CYS CYS ILE ILE ARG VAL SER LEU ASP VAL ASP SEQRES 3 B 100 ASN GLY ASN MET TYR LYS SER ILE LEU VAL THR SER GLN SEQRES 4 B 100 ASP LYS ALA PRO THR VAL ILE ARG LYS ALA MET ASP LYS SEQRES 5 B 100 HIS ASN LEU ASP GLU ASP GLU PRO GLU ASP TYR GLU LEU SEQRES 6 B 100 LEU GLN ILE ILE SER GLU ASP HIS LYS LEU LYS ILE PRO SEQRES 7 B 100 GLU ASN ALA ASN VAL PHE TYR ALA MET ASN SER ALA ALA SEQRES 8 B 100 ASN TYR ASP PHE ILE LEU LYS LYS ARG FORMUL 3 HOH *58(H2 O) HELIX 1 1 ALA A 42 HIS A 53 1 12 HELIX 2 2 PRO A 60 ASP A 62 5 3 HELIX 3 3 VAL A 83 ALA A 86 1 4 HELIX 4 4 ALA B 42 LYS B 52 1 11 HELIX 5 5 PRO B 60 ASP B 62 5 3 HELIX 6 6 VAL B 83 ALA B 86 1 4 SHEET 1 A 5 LYS A 32 THR A 37 0 SHEET 2 A 5 CYS A 16 LEU A 23 -1 N VAL A 21 O LYS A 32 SHEET 3 A 5 ASP A 94 LYS A 99 1 N PHE A 95 O ARG A 20 SHEET 4 A 5 TYR A 63 SER A 70 -1 N LEU A 66 O ILE A 96 SHEET 5 A 5 HIS A 73 LYS A 76 -1 N LEU A 75 O GLN A 67 SHEET 1 B 3 LYS B 32 THR B 37 0 SHEET 2 B 3 CYS B 16 LEU B 23 -1 N VAL B 21 O LYS B 32 SHEET 3 B 3 ASP B 94 LEU B 97 1 N PHE B 95 O ARG B 20 SHEET 1 C 2 LEU B 66 SER B 70 0 SHEET 2 C 2 HIS B 73 LYS B 76 -1 N LEU B 75 O GLN B 67 SSBOND 1 CYS A 16 CYS B 16 1555 1555 2.05 CISPEP 1 LEU B 65 LEU B 66 0 -16.09 CRYST1 105.282 30.714 51.326 90.00 94.57 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009498 0.000000 0.000759 0.00000 SCALE2 0.000000 0.032558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019545 0.00000 MTRIX1 1 -0.219734 -0.826478 -0.518316 90.18680 1 MTRIX2 1 -0.811699 -0.139838 0.567089 3.10410 1 MTRIX3 1 -0.541167 0.545325 -0.640124 130.45880 1