HEADER HORMONE/GROWTH FACTOR 05-JUN-02 1LXI TITLE REFINEMENT OF BMP7 CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BMP7, OSTEOGENIC PROTEIN 1, OP-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP7; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL: OVARY CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 OTHER_DETAILS: DHFR- KEYWDS CYSTINE-KNOT GROWTH FACTOR, HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GREENWALD,J.GROPPE,W.KWIATKOWSKI,S.CHOE REVDAT 5 30-OCT-24 1LXI 1 REMARK HETSYN REVDAT 4 29-JUL-20 1LXI 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 1LXI 1 VERSN REVDAT 2 24-FEB-09 1LXI 1 VERSN REVDAT 1 01-APR-03 1LXI 0 JRNL AUTH J.GREENWALD,J.GROPPE,P.GRAY,E.WIATER,W.KWIATKOWSKI,W.VALE, JRNL AUTH 2 S.CHOE JRNL TITL THE BMP7/ACTRII EXTRACELLULAR DOMAIN COMPLEX PROVIDES NEW JRNL TITL 2 INSIGHTS INTO THE COOPERATIVE NATURE OF RECEPTOR ASSEMBLY JRNL REF MOL.CELL V. 11 605 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 12667445 JRNL DOI 10.1016/S1097-2765(03)00094-7 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 14892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.29000 REMARK 3 B22 (A**2) : -1.29000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : -0.64000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.128 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 872 ; 0.030 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 742 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1198 ; 2.462 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1729 ; 1.424 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 107 ; 5.157 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 139 ;23.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 131 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 967 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 173 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 175 ; 0.306 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 650 ; 0.232 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2 ; 0.389 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 68 ; 0.409 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.120 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.309 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.255 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.667 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 528 ; 1.618 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 859 ; 2.880 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 344 ; 4.093 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 339 ; 6.526 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1LXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI 311 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15770 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1BMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MPD, 0.1M SODIUM ACETATE, PH 4.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.87467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.93733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.93733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.87467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: X-Y+1,-Y+2,1/3-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 175.44635 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 13.93733 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 ARG A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 PRO A 15 REMARK 465 LYS A 16 REMARK 465 ASN A 17 REMARK 465 GLN A 18 REMARK 465 GLU A 19 REMARK 465 ALA A 20 REMARK 465 LEU A 21 REMARK 465 ARG A 22 REMARK 465 MET A 23 REMARK 465 ALA A 24 REMARK 465 ASN A 25 REMARK 465 VAL A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 ASN A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 SER A 32 REMARK 465 ASP A 33 REMARK 465 GLN A 34 REMARK 465 ARG A 35 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 110 NH1 ARG A 134 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 244 O HOH A 244 5675 1.22 REMARK 500 SG CYS A 103 SG CYS A 103 5675 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 103 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 PHE A 117 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 HIS A 139 CA - C - O ANGL. DEV. = -17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 65 174.94 63.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BMP RELATED DB: PDB REMARK 900 THE SAME PROTEIN ORIGINALLY REFINED TO 2.8 ANGSTROMS. DBREF 1LXI A 1 139 UNP P18075 BMP7_HUMAN 293 431 SEQRES 1 A 139 SER THR GLY SER LYS GLN ARG SER GLN ASN ARG SER LYS SEQRES 2 A 139 THR PRO LYS ASN GLN GLU ALA LEU ARG MET ALA ASN VAL SEQRES 3 A 139 ALA GLU ASN SER SER SER ASP GLN ARG GLN ALA CYS LYS SEQRES 4 A 139 LYS HIS GLU LEU TYR VAL SER PHE ARG ASP LEU GLY TRP SEQRES 5 A 139 GLN ASP TRP ILE ILE ALA PRO GLU GLY TYR ALA ALA TYR SEQRES 6 A 139 TYR CYS GLU GLY GLU CYS ALA PHE PRO LEU ASN SER TYR SEQRES 7 A 139 MET ASN ALA THR ASN HIS ALA ILE VAL GLN THR LEU VAL SEQRES 8 A 139 HIS PHE ILE ASN PRO GLU THR VAL PRO LYS PRO CYS CYS SEQRES 9 A 139 ALA PRO THR GLN LEU ASN ALA ILE SER VAL LEU TYR PHE SEQRES 10 A 139 ASP ASP SER SER ASN VAL ILE LEU LYS LYS TYR ARG ASN SEQRES 11 A 139 MET VAL VAL ARG ALA CYS GLY CYS HIS MODRES 1LXI ASN A 80 ASN GLYCOSYLATION SITE HET NAG A 180 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *71(H2 O) HELIX 1 1 PHE A 47 GLY A 51 1 5 HELIX 2 2 ASN A 76 ASN A 80 5 5 HELIX 3 3 THR A 82 ASN A 95 1 14 SHEET 1 A 2 LYS A 39 HIS A 41 0 SHEET 2 A 2 TYR A 66 GLU A 68 -1 O TYR A 66 N HIS A 41 SHEET 1 B 2 TYR A 44 SER A 46 0 SHEET 2 B 2 GLY A 61 ALA A 63 -1 O TYR A 62 N VAL A 45 SHEET 1 C 3 ILE A 56 ALA A 58 0 SHEET 2 C 3 CYS A 104 PHE A 117 -1 O LEU A 115 N ALA A 58 SHEET 3 C 3 VAL A 123 CYS A 138 -1 O TYR A 128 N ILE A 112 SSBOND 1 CYS A 38 CYS A 104 1555 1555 2.04 SSBOND 2 CYS A 67 CYS A 136 1555 1555 2.03 SSBOND 3 CYS A 71 CYS A 138 1555 1555 2.13 LINK ND2 ASN A 80 C1 NAG A 180 1555 1555 1.46 CISPEP 1 ALA A 58 PRO A 59 0 -2.92 CISPEP 2 PHE A 73 PRO A 74 0 3.31 CRYST1 101.294 101.294 41.812 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009872 0.005700 0.000000 0.00000 SCALE2 0.000000 0.011399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023917 0.00000 TER 836 HIS A 139 HETATM 837 C1 NAG A 180 2.832 90.716 18.267 1.00 48.47 C HETATM 838 C2 NAG A 180 2.108 89.594 19.002 1.00 48.30 C HETATM 839 C3 NAG A 180 2.788 89.335 20.343 1.00 53.26 C HETATM 840 C4 NAG A 180 4.245 88.989 20.096 1.00 57.56 C HETATM 841 C5 NAG A 180 4.920 90.125 19.343 1.00 58.14 C HETATM 842 C6 NAG A 180 6.380 89.720 19.115 1.00 58.66 C HETATM 843 C7 NAG A 180 -0.283 88.972 18.995 1.00 45.31 C HETATM 844 C8 NAG A 180 -1.680 89.469 19.232 1.00 45.87 C HETATM 845 N2 NAG A 180 0.680 89.841 19.179 1.00 40.39 N HETATM 846 O3 NAG A 180 2.189 88.273 21.028 1.00 48.83 O HETATM 847 O4 NAG A 180 4.902 88.734 21.322 1.00 60.88 O HETATM 848 O5 NAG A 180 4.206 90.349 18.131 1.00 50.18 O HETATM 849 O6 NAG A 180 7.265 90.648 19.687 1.00 65.90 O HETATM 850 O7 NAG A 180 -0.153 87.774 18.680 1.00 47.40 O HETATM 851 O HOH A 181 5.467 99.005 9.772 1.00 26.38 O HETATM 852 O HOH A 182 -4.110 94.394 2.288 1.00 28.90 O HETATM 853 O HOH A 183 -12.033 100.824 12.681 1.00 33.65 O HETATM 854 O HOH A 184 2.969 70.269 20.148 1.00 38.00 O HETATM 855 O HOH A 185 3.536 67.247 19.720 1.00 38.52 O HETATM 856 O HOH A 186 8.615 71.648 4.844 1.00 39.04 O HETATM 857 O HOH A 187 -7.262 82.481 10.533 1.00 32.88 O HETATM 858 O HOH A 188 -11.918 101.106 10.049 1.00 38.94 O HETATM 859 O HOH A 189 -2.497 75.009 20.122 1.00 35.05 O HETATM 860 O HOH A 190 3.599 72.893 19.314 1.00 45.40 O HETATM 861 O HOH A 191 -10.039 87.138 19.211 1.00 39.00 O HETATM 862 O HOH A 192 11.483 76.383 14.051 1.00 45.57 O HETATM 863 O HOH A 193 -7.325 67.116 14.595 1.00 46.00 O HETATM 864 O HOH A 194 -7.725 71.923 20.355 1.00 46.65 O HETATM 865 O HOH A 195 2.337 79.462 20.096 1.00 41.74 O HETATM 866 O HOH A 196 -2.766 96.005 5.409 1.00 33.53 O HETATM 867 O HOH A 197 -2.227 86.588 21.309 1.00 42.05 O HETATM 868 O HOH A 198 -2.930 80.797 22.455 1.00 41.58 O HETATM 869 O HOH A 199 -9.352 89.068 10.698 1.00 42.07 O HETATM 870 O HOH A 200 16.406 60.540 9.311 1.00 36.80 O HETATM 871 O HOH A 201 -14.042 94.994 6.692 1.00 40.55 O HETATM 872 O HOH A 202 13.386 66.759 6.881 1.00 46.12 O HETATM 873 O HOH A 203 -9.035 96.677 18.899 1.00 48.41 O HETATM 874 O HOH A 204 0.337 97.701 16.418 1.00 46.50 O HETATM 875 O HOH A 205 -7.567 79.556 22.962 1.00 44.97 O HETATM 876 O HOH A 206 0.305 72.889 11.061 1.00 51.62 O HETATM 877 O HOH A 207 -10.507 92.677 10.728 1.00 41.91 O HETATM 878 O HOH A 208 -10.193 86.855 12.154 1.00 43.68 O HETATM 879 O HOH A 209 4.165 77.543 20.917 1.00 44.56 O HETATM 880 O HOH A 210 8.810 68.874 16.928 1.00 57.70 O HETATM 881 O HOH A 211 -8.441 61.987 16.901 1.00 54.66 O HETATM 882 O HOH A 212 16.818 61.151 6.591 1.00 46.12 O HETATM 883 O HOH A 213 -3.094 72.935 21.981 1.00 48.14 O HETATM 884 O HOH A 214 -5.281 83.735 9.383 1.00 38.48 O HETATM 885 O HOH A 215 -1.708 52.958 5.289 1.00 44.54 O HETATM 886 O HOH A 216 -14.670 101.792 10.434 1.00 44.46 O HETATM 887 O HOH A 217 5.082 89.636 15.980 1.00 46.92 O HETATM 888 O HOH A 218 -11.833 85.747 17.611 1.00 52.01 O HETATM 889 O HOH A 219 14.833 67.955 12.489 1.00 54.34 O HETATM 890 O HOH A 220 -4.871 91.390 20.941 1.00 60.52 O HETATM 891 O HOH A 221 -4.839 94.134 22.116 1.00 44.74 O HETATM 892 O HOH A 222 -8.524 102.819 23.371 1.00 46.42 O HETATM 893 O HOH A 223 4.344 91.634 7.418 1.00 60.02 O HETATM 894 O HOH A 224 18.970 61.764 5.881 1.00 58.95 O HETATM 895 O HOH A 225 -5.680 72.651 22.881 1.00 61.45 O HETATM 896 O HOH A 226 -3.543 55.293 15.552 1.00 54.47 O HETATM 897 O HOH A 227 4.279 81.568 21.543 1.00 57.28 O HETATM 898 O HOH A 228 1.066 56.079 14.246 1.00 60.06 O HETATM 899 O HOH A 229 1.325 63.996 20.661 1.00 48.73 O HETATM 900 O HOH A 230 14.251 52.388 -0.881 1.00 66.78 O HETATM 901 O HOH A 231 8.260 82.856 10.902 1.00 44.44 O HETATM 902 O HOH A 232 1.958 106.116 9.359 1.00 70.77 O HETATM 903 O HOH A 233 -6.906 101.179 23.512 1.00 49.79 O HETATM 904 O HOH A 234 2.406 65.995 22.075 1.00 56.45 O HETATM 905 O HOH A 235 -1.131 50.612 6.329 1.00 65.67 O HETATM 906 O HOH A 236 -17.076 98.819 9.586 1.00 70.27 O HETATM 907 O HOH A 237 -12.573 103.373 17.525 1.00 49.98 O HETATM 908 O HOH A 238 -15.282 97.091 2.084 1.00 55.02 O HETATM 909 O HOH A 239 -8.096 85.738 10.700 1.00 43.48 O HETATM 910 O HOH A 240 10.486 65.138 18.107 1.00 55.28 O HETATM 911 O HOH A 241 -16.263 102.110 8.199 1.00 53.31 O HETATM 912 O HOH A 242 6.593 73.796 18.277 1.00 66.22 O HETATM 913 O HOH A 243 8.688 64.523 19.658 1.00 71.14 O HETATM 914 O HOH A 244 1.246 87.639 7.573 1.00 67.87 O HETATM 915 O HOH A 245 -0.963 100.226 16.030 1.00 52.87 O HETATM 916 O HOH A 246 5.074 91.885 13.816 1.00 52.90 O HETATM 917 O HOH A 247 -10.055 91.317 5.926 1.00 64.42 O HETATM 918 O HOH A 248 4.183 95.618 12.604 1.00 65.19 O HETATM 919 O HOH A 249 -16.444 108.135 8.069 1.00 55.05 O HETATM 920 O HOH A 250 -14.220 98.787 11.979 1.00 69.37 O HETATM 921 O HOH A 251 -7.673 69.741 15.080 1.00 56.92 O CONECT 20 554 CONECT 270 814 CONECT 298 824 CONECT 371 837 CONECT 554 20 CONECT 814 270 CONECT 824 298 CONECT 837 371 838 848 CONECT 838 837 839 845 CONECT 839 838 840 846 CONECT 840 839 841 847 CONECT 841 840 842 848 CONECT 842 841 849 CONECT 843 844 845 850 CONECT 844 843 CONECT 845 838 843 CONECT 846 839 CONECT 847 840 CONECT 848 837 841 CONECT 849 842 CONECT 850 843 MASTER 375 0 1 3 7 0 0 6 913 1 21 11 END