HEADER OXIDOREDUCTASE 06-JUN-02 1LY4 TITLE ANALYSIS OF QUINAZOLINE AND PYRIDO[2,3D]PYRIMIDINE N9-C10 REVERSED TITLE 2 BRIDGE ANTIFOLATES IN COMPLEX WITH NADP+ AND PNEUMOCYSTIS CARINII TITLE 3 DIHYDROFOLATE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PNEUMOCYSTIS CARINII; SOURCE 3 ORGANISM_TAXID: 4754; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21C; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS PCDHFR, N9-C10 REVERSED BRIDGE PYRIDOPYRIMIDINE ANTIFOLATE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CODY,N.GALITSKY,J.R.LUFT,W.PANGBORN,S.F.QUEENER,A.GANGJEE REVDAT 4 14-FEB-24 1LY4 1 REMARK REVDAT 3 24-FEB-09 1LY4 1 VERSN REVDAT 2 12-APR-05 1LY4 1 REMARK SCALE1 SCALE2 SCALE3 REVDAT 1 28-AUG-02 1LY4 0 JRNL AUTH V.CODY,N.GALITSKY,J.R.LUFT,W.PANGBORN,S.F.QUEENER,A.GANGJEE JRNL TITL ANALYSIS OF QUINAZOLINE AND PYRIDO[2,3-D]PYRIMIDINE N9-C10 JRNL TITL 2 REVERSED-BRIDGE ANTIFOLATES IN COMPLEX WITH NADP+ AND JRNL TITL 3 PNEUMOCYSTIS CARINII DIHYDROFOLATE REDUCTASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 1393 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 12198294 JRNL DOI 10.1107/S0907444902010442 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.N.CHAMPNESS,A.ACHARI,S.P.BALLANTINE,P.K.BRYANT,C.J.DELVES, REMARK 1 AUTH 2 D.K.STAMMERS REMARK 1 TITL THE STRUCTURE OF PNEUMOCYSTIS CARINII DIHYDROFOLATE REMARK 1 TITL 2 REDUCTASE TO 1.9 A RESOLUTION REMARK 1 REF STRUCTURE V. 2 915 1994 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.CODY,N.GALITSKY,D.RAK,J.R.LUFT,W.PANGBORN,S.F.QUEENER REMARK 1 TITL LIGAND-INDUCED CONFORMATIONAL CHANGES IN THE CRYSTAL REMARK 1 TITL 2 STRUCTURES OF PNEUMOCYSTIS CARINII DIHYDROFOLATE REDUCTASE REMARK 1 TITL 3 COMPLEXES WITH FOLATE AND NADP+ REMARK 1 REF BIOCHEMISTRY V. 38 4303 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI982728M REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 8544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 8544 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.063 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418,1.5621,1.7321 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8544 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PROTEIN REMARK 200 STARTING MODEL: PDB ENTRY 1CD2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES/KCL, PEG 2000, PH 6.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.56400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 216 O HOH A 219 1.80 REMARK 500 OE1 GLU A 50 O HOH A 238 2.06 REMARK 500 O LEU A 104 OG1 THR A 108 2.08 REMARK 500 C VAL A 43 O HOH A 215 2.09 REMARK 500 O THR A 45 OG SER A 48 2.15 REMARK 500 O HOH A 210 O HOH A 234 2.17 REMARK 500 O ASN A 83 N SER A 85 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 2 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 GLN A 3 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 SER A 6 O - C - N ANGL. DEV. = 10.9 DEGREES REMARK 500 LEU A 9 CB - CG - CD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 LEU A 9 CA - C - O ANGL. DEV. = -14.6 DEGREES REMARK 500 LEU A 13 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU A 13 CB - CG - CD2 ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 21 NH1 - CZ - NH2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LYS A 28 C - N - CA ANGL. DEV. = 23.9 DEGREES REMARK 500 GLU A 32 CG - CD - OE1 ANGL. DEV. = 13.7 DEGREES REMARK 500 PHE A 36 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 38 N - CA - CB ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 38 NH1 - CZ - NH2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 MET A 52 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 MET A 52 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 VAL A 55 CA - CB - CG2 ANGL. DEV. = -9.5 DEGREES REMARK 500 ARG A 59 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 59 CD - NE - CZ ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 GLU A 63 OE1 - CD - OE2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 75 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 87 CB - CG - OD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ALA A 95 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 LYS A 96 CB - CA - C ANGL. DEV. = 14.4 DEGREES REMARK 500 LYS A 96 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 LYS A 96 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 LEU A 98 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 HIS A 100 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 HIS A 100 CA - CB - CG ANGL. DEV. = -11.2 DEGREES REMARK 500 HIS A 100 O - C - N ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU A 103 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 GLU A 103 CA - C - O ANGL. DEV. = -12.7 DEGREES REMARK 500 TYR A 106 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 106 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 107 NH1 - CZ - NH2 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -8.6 DEGREES REMARK 500 GLU A 112 CB - CG - CD ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 GLY A 125 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 GLN A 127 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 ALA A 132 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 87 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 4 -68.57 -150.90 REMARK 500 THR A 15 -9.78 -57.48 REMARK 500 TYR A 17 12.15 84.18 REMARK 500 PRO A 26 15.17 -36.93 REMARK 500 THR A 45 -47.52 -25.90 REMARK 500 PRO A 66 136.48 -35.74 REMARK 500 ARG A 82 -37.67 -39.49 REMARK 500 ASN A 83 57.45 -113.78 REMARK 500 GLU A 84 94.14 -48.80 REMARK 500 SER A 85 -78.54 -63.53 REMARK 500 LEU A 86 -154.45 -143.36 REMARK 500 ASP A 87 121.43 -176.72 REMARK 500 TYR A 109 -142.66 -109.59 REMARK 500 SER A 111 -124.58 -64.60 REMARK 500 GLU A 112 45.76 -73.96 REMARK 500 ASN A 118 -90.60 -104.45 REMARK 500 ASP A 149 57.84 -99.47 REMARK 500 VAL A 181 -97.51 -74.08 REMARK 500 THR A 183 151.53 -27.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 204 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COQ A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LY3 RELATED DB: PDB REMARK 900 ANALYSIS OF QUINAZOLINE AND PYRIDOPYRIMIDINE N9-C10 REVERSED BRIDGE REMARK 900 ANTIFOLATES IN COMPLEX WITH NADP+ AND PNEUMOCYSTIS CARINII REMARK 900 DIHYDROFOLATE REDUCTASE REMARK 900 RELATED ID: 1CD2 RELATED DB: PDB REMARK 900 LIGAND INDUCED CONFORMATIONAL CHANGES IN THE CRYSTAL STRUCTURES OF REMARK 900 PNEUMOCYSTIS CARINII DIHYDROFOLATE REDUCTASE COMPLEXES WITH FOLATE REMARK 900 AND NADP+ REMARK 900 RELATED ID: 1D8R RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES ON BIO-ACTIVE COMPOUNDS. CRYSTAL STRUCTURE AND REMARK 900 MOLECULAR MODELING STUDIES ON THE PNEUMOCYSTIS CARINII REMARK 900 DIHYDROFOLATE REDUCTASE COFACTOR COMPLEX WITH TAB, A HIGHLY REMARK 900 SELECTIVE ANTIFOLATE REMARK 900 RELATED ID: 1DAJ RELATED DB: PDB REMARK 900 COMPARISON OF TERNARY COMPLEXES OF PNEUMOCYSTIS CARINII AND WILD REMARK 900 TYPE HUMAN DIHYDROFOLATE REDUCTASE WITH COENZYME NADPH AND A NOVEL REMARK 900 CLASSICAL ANTITUMOR FURO[2,3D]PYRIMIDINE ANTIFOLATE DBREF 1LY4 A 1 206 UNP P16184 DYR_PNECA 1 206 SEQRES 1 A 206 MET ASN GLN GLN LYS SER LEU THR LEU ILE VAL ALA LEU SEQRES 2 A 206 THR THR SER TYR GLY ILE GLY ARG SER ASN SER LEU PRO SEQRES 3 A 206 TRP LYS LEU LYS LYS GLU ILE SER TYR PHE LYS ARG VAL SEQRES 4 A 206 THR SER PHE VAL PRO THR PHE ASP SER PHE GLU SER MET SEQRES 5 A 206 ASN VAL VAL LEU MET GLY ARG LYS THR TRP GLU SER ILE SEQRES 6 A 206 PRO LEU GLN PHE ARG PRO LEU LYS GLY ARG ILE ASN VAL SEQRES 7 A 206 VAL ILE THR ARG ASN GLU SER LEU ASP LEU GLY ASN GLY SEQRES 8 A 206 ILE HIS SER ALA LYS SER LEU ASP HIS ALA LEU GLU LEU SEQRES 9 A 206 LEU TYR ARG THR TYR GLY SER GLU SER SER VAL GLN ILE SEQRES 10 A 206 ASN ARG ILE PHE VAL ILE GLY GLY ALA GLN LEU TYR LYS SEQRES 11 A 206 ALA ALA MET ASP HIS PRO LYS LEU ASP ARG ILE MET ALA SEQRES 12 A 206 THR ILE ILE TYR LYS ASP ILE HIS CYS ASP VAL PHE PHE SEQRES 13 A 206 PRO LEU LYS PHE ARG ASP LYS GLU TRP SER SER VAL TRP SEQRES 14 A 206 LYS LYS GLU LYS HIS SER ASP LEU GLU SER TRP VAL GLY SEQRES 15 A 206 THR LYS VAL PRO HIS GLY LYS ILE ASN GLU ASP GLY PHE SEQRES 16 A 206 ASP TYR GLU PHE GLU MET TRP THR ARG ASP LEU HET NAP A 207 48 HET COQ A 307 25 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM COQ 2,4-DIAMINO-6-[N-(3',5'-DIMETHOXYBENZYL)-N- HETNAM 2 COQ METHYLAMINO]PYRIDO[2,3-D]PYRIMIDINE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 COQ C17 H20 N6 O2 FORMUL 4 HOH *33(H2 O) HELIX 1 1 LYS A 31 PHE A 42 1 12 HELIX 2 2 ARG A 59 ILE A 65 1 7 HELIX 3 3 SER A 97 TYR A 109 1 13 HELIX 4 4 GLY A 125 MET A 133 1 9 HELIX 5 5 ASP A 162 SER A 166 5 5 HELIX 6 6 LYS A 173 VAL A 181 1 9 SHEET 1 A 8 HIS A 93 ALA A 95 0 SHEET 2 A 8 ARG A 75 ILE A 80 1 N VAL A 79 O ALA A 95 SHEET 3 A 8 SER A 51 GLY A 58 1 N MET A 57 O ILE A 80 SHEET 4 A 8 GLN A 116 GLY A 124 1 O PHE A 121 N VAL A 54 SHEET 5 A 8 LEU A 7 THR A 14 1 N THR A 8 O ILE A 120 SHEET 6 A 8 LEU A 138 TYR A 147 1 O THR A 144 N VAL A 11 SHEET 7 A 8 PHE A 195 THR A 203 -1 O TRP A 202 N ILE A 141 SHEET 8 A 8 LYS A 170 LYS A 171 -1 N LYS A 170 O THR A 203 SHEET 1 B 8 HIS A 93 ALA A 95 0 SHEET 2 B 8 ARG A 75 ILE A 80 1 N VAL A 79 O ALA A 95 SHEET 3 B 8 SER A 51 GLY A 58 1 N MET A 57 O ILE A 80 SHEET 4 B 8 GLN A 116 GLY A 124 1 O PHE A 121 N VAL A 54 SHEET 5 B 8 LEU A 7 THR A 14 1 N THR A 8 O ILE A 120 SHEET 6 B 8 LEU A 138 TYR A 147 1 O THR A 144 N VAL A 11 SHEET 7 B 8 PHE A 195 THR A 203 -1 O TRP A 202 N ILE A 141 SHEET 8 B 8 ILE A 190 GLU A 192 -1 N ILE A 190 O TYR A 197 SHEET 1 C 2 GLY A 18 GLY A 20 0 SHEET 2 C 2 VAL A 154 PHE A 155 -1 N VAL A 154 O GLY A 20 CISPEP 1 ARG A 70 PRO A 71 0 -5.08 CISPEP 2 GLY A 124 GLY A 125 0 3.39 SITE 1 AC1 25 ALA A 12 ILE A 19 GLY A 20 ASN A 23 SITE 2 AC1 25 SER A 24 TRP A 27 GLY A 58 ARG A 59 SITE 3 AC1 25 LYS A 60 THR A 61 SER A 64 ILE A 80 SITE 4 AC1 25 THR A 81 ARG A 82 ASN A 83 LYS A 96 SITE 5 AC1 25 ILE A 123 GLY A 125 ALA A 126 GLN A 127 SITE 6 AC1 25 LEU A 128 TYR A 129 ALA A 131 HOH A 222 SITE 7 AC1 25 COQ A 307 SITE 1 AC2 13 ILE A 10 LEU A 25 GLU A 32 ILE A 33 SITE 2 AC2 13 PHE A 36 ILE A 65 PRO A 66 PHE A 69 SITE 3 AC2 13 LEU A 72 ILE A 123 TYR A 129 THR A 144 SITE 4 AC2 13 NAP A 207 CRYST1 37.047 43.128 60.730 90.00 94.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026993 0.000000 0.002172 0.00000 SCALE2 0.000000 0.023187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016520 0.00000