data_1LYB # _entry.id 1LYB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LYB pdb_00001lyb 10.2210/pdb1lyb/pdb WWPDB D_1000174857 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-02-27 5 'Structure model' 1 4 2017-11-29 6 'Structure model' 2 0 2020-07-29 7 'Structure model' 3 0 2023-11-15 8 'Structure model' 3 1 2024-10-23 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' Other 11 6 'Structure model' 'Atomic model' 12 6 'Structure model' 'Data collection' 13 6 'Structure model' 'Derived calculations' 14 6 'Structure model' 'Structure summary' 15 7 'Structure model' 'Atomic model' 16 7 'Structure model' 'Data collection' 17 7 'Structure model' 'Database references' 18 7 'Structure model' 'Structure summary' 19 8 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' pdbx_database_status 2 5 'Structure model' struct_conf 3 5 'Structure model' struct_conf_type 4 6 'Structure model' atom_site 5 6 'Structure model' chem_comp 6 6 'Structure model' entity 7 6 'Structure model' pdbx_branch_scheme 8 6 'Structure model' pdbx_chem_comp_identifier 9 6 'Structure model' pdbx_entity_branch 10 6 'Structure model' pdbx_entity_branch_descriptor 11 6 'Structure model' pdbx_entity_branch_link 12 6 'Structure model' pdbx_entity_branch_list 13 6 'Structure model' pdbx_entity_nonpoly 14 6 'Structure model' pdbx_nonpoly_scheme 15 6 'Structure model' pdbx_struct_assembly_gen 16 6 'Structure model' struct_asym 17 6 'Structure model' struct_conn 18 6 'Structure model' struct_site 19 6 'Structure model' struct_site_gen 20 7 'Structure model' atom_site 21 7 'Structure model' chem_comp 22 7 'Structure model' chem_comp_atom 23 7 'Structure model' chem_comp_bond 24 7 'Structure model' database_2 25 8 'Structure model' pdbx_entry_details 26 8 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_pdbx_database_status.process_site' 2 6 'Structure model' '_atom_site.B_iso_or_equiv' 3 6 'Structure model' '_atom_site.Cartn_x' 4 6 'Structure model' '_atom_site.Cartn_y' 5 6 'Structure model' '_atom_site.Cartn_z' 6 6 'Structure model' '_atom_site.auth_asym_id' 7 6 'Structure model' '_atom_site.auth_atom_id' 8 6 'Structure model' '_atom_site.auth_comp_id' 9 6 'Structure model' '_atom_site.auth_seq_id' 10 6 'Structure model' '_atom_site.label_asym_id' 11 6 'Structure model' '_atom_site.label_atom_id' 12 6 'Structure model' '_atom_site.label_comp_id' 13 6 'Structure model' '_atom_site.label_entity_id' 14 6 'Structure model' '_atom_site.type_symbol' 15 6 'Structure model' '_chem_comp.name' 16 6 'Structure model' '_chem_comp.type' 17 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 6 'Structure model' '_struct_conn.pdbx_dist_value' 19 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 6 'Structure model' '_struct_conn.pdbx_role' 21 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 7 'Structure model' '_atom_site.auth_atom_id' 36 7 'Structure model' '_atom_site.label_atom_id' 37 7 'Structure model' '_chem_comp.pdbx_synonyms' 38 7 'Structure model' '_database_2.pdbx_DOI' 39 7 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LYB _pdbx_database_status.recvd_initial_deposition_date 1993-04-22 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baldwin, E.T.' 1 'Bhat, T.N.' 2 'Gulnik, S.' 3 'Erickson, J.W.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structures of native and inhibited forms of human cathepsin D: implications for lysosomal targeting and drug design.' Proc.Natl.Acad.Sci.USA 90 6796 6800 1993 PNASA6 US 0027-8424 0040 ? 8393577 10.1073/pnas.90.14.6796 1 'Human Liver Cathepsin D. Purification, Crystallization and Preliminary X-Ray Diffraction Analysis of a Lysosomal Enzyme' J.Mol.Biol. 227 265 ? 1992 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baldwin, E.T.' 1 ? primary 'Bhat, T.N.' 2 ? primary 'Gulnik, S.' 3 ? primary 'Hosur, M.V.' 4 ? primary 'Sowder 2nd., R.C.' 5 ? primary 'Cachau, R.E.' 6 ? primary 'Collins, J.' 7 ? primary 'Silva, A.M.' 8 ? primary 'Erickson, J.W.' 9 ? 1 'Gulnik, S.' 10 ? 1 'Baldwin, E.T.' 11 ? 1 'Tarasova, N.' 12 ? 1 'Erickson, J.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'CATHEPSIN D' 10688.941 2 3.4.23.5 ? ? ? 2 polymer nat 'CATHEPSIN D' 26270.207 2 3.4.23.5 ? ? ? 3 polymer man PEPSTATIN 685.891 2 ? ? ? ? 4 branched man ;alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 748.682 2 ? ? ? ? 5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 6 water nat water 18.015 44 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGS GSLSGYLSQDTVSVPCQ ; ;GPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGS GSLSGYLSQDTVSVPCQ ; A,C ? 2 'polypeptide(L)' no no ;GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC EKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA A ; ;GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC EKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA A ; B,D ? 3 'polypeptide(L)' no yes '(IVA)VV(STA)A(STA)' XVVXAX I,J ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 ILE n 1 4 PRO n 1 5 GLU n 1 6 VAL n 1 7 LEU n 1 8 LYS n 1 9 ASN n 1 10 TYR n 1 11 MET n 1 12 ASP n 1 13 ALA n 1 14 GLN n 1 15 TYR n 1 16 TYR n 1 17 GLY n 1 18 GLU n 1 19 ILE n 1 20 GLY n 1 21 ILE n 1 22 GLY n 1 23 THR n 1 24 PRO n 1 25 PRO n 1 26 GLN n 1 27 CYS n 1 28 PHE n 1 29 THR n 1 30 VAL n 1 31 VAL n 1 32 PHE n 1 33 ASP n 1 34 THR n 1 35 GLY n 1 36 SER n 1 37 SER n 1 38 ASN n 1 39 LEU n 1 40 TRP n 1 41 VAL n 1 42 PRO n 1 43 SER n 1 44 ILE n 1 45 HIS n 1 46 CYS n 1 47 LYS n 1 48 LEU n 1 49 LEU n 1 50 ASP n 1 51 ILE n 1 52 ALA n 1 53 CYS n 1 54 TRP n 1 55 ILE n 1 56 HIS n 1 57 HIS n 1 58 LYS n 1 59 TYR n 1 60 ASN n 1 61 SER n 1 62 ASP n 1 63 LYS n 1 64 SER n 1 65 SER n 1 66 THR n 1 67 TYR n 1 68 VAL n 1 69 LYS n 1 70 ASN n 1 71 GLY n 1 72 THR n 1 73 SER n 1 74 PHE n 1 75 ASP n 1 76 ILE n 1 77 HIS n 1 78 TYR n 1 79 GLY n 1 80 SER n 1 81 GLY n 1 82 SER n 1 83 LEU n 1 84 SER n 1 85 GLY n 1 86 TYR n 1 87 LEU n 1 88 SER n 1 89 GLN n 1 90 ASP n 1 91 THR n 1 92 VAL n 1 93 SER n 1 94 VAL n 1 95 PRO n 1 96 CYS n 1 97 GLN n 2 1 GLY n 2 2 GLY n 2 3 VAL n 2 4 LYS n 2 5 VAL n 2 6 GLU n 2 7 ARG n 2 8 GLN n 2 9 VAL n 2 10 PHE n 2 11 GLY n 2 12 GLU n 2 13 ALA n 2 14 THR n 2 15 LYS n 2 16 GLN n 2 17 PRO n 2 18 GLY n 2 19 ILE n 2 20 THR n 2 21 PHE n 2 22 ILE n 2 23 ALA n 2 24 ALA n 2 25 LYS n 2 26 PHE n 2 27 ASP n 2 28 GLY n 2 29 ILE n 2 30 LEU n 2 31 GLY n 2 32 MET n 2 33 ALA n 2 34 TYR n 2 35 PRO n 2 36 ARG n 2 37 ILE n 2 38 SER n 2 39 VAL n 2 40 ASN n 2 41 ASN n 2 42 VAL n 2 43 LEU n 2 44 PRO n 2 45 VAL n 2 46 PHE n 2 47 ASP n 2 48 ASN n 2 49 LEU n 2 50 MET n 2 51 GLN n 2 52 GLN n 2 53 LYS n 2 54 LEU n 2 55 VAL n 2 56 ASP n 2 57 GLN n 2 58 ASN n 2 59 ILE n 2 60 PHE n 2 61 SER n 2 62 PHE n 2 63 TYR n 2 64 LEU n 2 65 SER n 2 66 ARG n 2 67 ASP n 2 68 PRO n 2 69 ASP n 2 70 ALA n 2 71 GLN n 2 72 PRO n 2 73 GLY n 2 74 GLY n 2 75 GLU n 2 76 LEU n 2 77 MET n 2 78 LEU n 2 79 GLY n 2 80 GLY n 2 81 THR n 2 82 ASP n 2 83 SER n 2 84 LYS n 2 85 TYR n 2 86 TYR n 2 87 LYS n 2 88 GLY n 2 89 SER n 2 90 LEU n 2 91 SER n 2 92 TYR n 2 93 LEU n 2 94 ASN n 2 95 VAL n 2 96 THR n 2 97 ARG n 2 98 LYS n 2 99 ALA n 2 100 TYR n 2 101 TRP n 2 102 GLN n 2 103 VAL n 2 104 HIS n 2 105 LEU n 2 106 ASP n 2 107 GLN n 2 108 VAL n 2 109 GLU n 2 110 VAL n 2 111 ALA n 2 112 SER n 2 113 GLY n 2 114 LEU n 2 115 THR n 2 116 LEU n 2 117 CYS n 2 118 LYS n 2 119 GLU n 2 120 GLY n 2 121 CYS n 2 122 GLU n 2 123 ALA n 2 124 ILE n 2 125 VAL n 2 126 ASP n 2 127 THR n 2 128 GLY n 2 129 THR n 2 130 SER n 2 131 LEU n 2 132 MET n 2 133 VAL n 2 134 GLY n 2 135 PRO n 2 136 VAL n 2 137 ASP n 2 138 GLU n 2 139 VAL n 2 140 ARG n 2 141 GLU n 2 142 LEU n 2 143 GLN n 2 144 LYS n 2 145 ALA n 2 146 ILE n 2 147 GLY n 2 148 ALA n 2 149 VAL n 2 150 PRO n 2 151 LEU n 2 152 ILE n 2 153 GLN n 2 154 GLY n 2 155 GLU n 2 156 TYR n 2 157 MET n 2 158 ILE n 2 159 PRO n 2 160 CYS n 2 161 GLU n 2 162 LYS n 2 163 VAL n 2 164 SER n 2 165 THR n 2 166 LEU n 2 167 PRO n 2 168 ALA n 2 169 ILE n 2 170 THR n 2 171 LEU n 2 172 LYS n 2 173 LEU n 2 174 GLY n 2 175 GLY n 2 176 LYS n 2 177 GLY n 2 178 TYR n 2 179 LYS n 2 180 LEU n 2 181 SER n 2 182 PRO n 2 183 GLU n 2 184 ASP n 2 185 TYR n 2 186 THR n 2 187 LEU n 2 188 LYS n 2 189 VAL n 2 190 SER n 2 191 GLN n 2 192 ALA n 2 193 GLY n 2 194 LYS n 2 195 THR n 2 196 LEU n 2 197 CYS n 2 198 LEU n 2 199 SER n 2 200 GLY n 2 201 PHE n 2 202 MET n 2 203 GLY n 2 204 MET n 2 205 ASP n 2 206 ILE n 2 207 PRO n 2 208 PRO n 2 209 PRO n 2 210 SER n 2 211 GLY n 2 212 PRO n 2 213 LEU n 2 214 TRP n 2 215 ILE n 2 216 LEU n 2 217 GLY n 2 218 ASP n 2 219 VAL n 2 220 PHE n 2 221 ILE n 2 222 GLY n 2 223 ARG n 2 224 TYR n 2 225 TYR n 2 226 THR n 2 227 VAL n 2 228 PHE n 2 229 ASP n 2 230 ARG n 2 231 ASP n 2 232 ASN n 2 233 ASN n 2 234 ARG n 2 235 VAL n 2 236 GLY n 2 237 PHE n 2 238 ALA n 2 239 GLU n 2 240 ALA n 2 241 ALA n 3 1 IVA n 3 2 VAL n 3 3 VAL n 3 4 STA n 3 5 ALA n 3 6 STA n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces argenteolus subsp. toyonakensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 285516 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? LIVER ? ? ? ? ? ? ? LIVER ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? LIVER ? ? ? ? ? ? ? LIVER ? ? ? ? ? # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c6-d1' WURCS PDB2Glycan 1.1.0 3 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 4 4 MAN C1 O1 3 BMA O6 HO6 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IVA non-polymer . 'ISOVALERIC ACID' ? 'C5 H10 O2' 102.132 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 STA peptide-like . STATINE ? 'C8 H17 N O3' 175.225 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 TRP 40 40 40 TRP TRP A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 TRP 54 54 54 TRP TRP A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 CYS 96 96 96 CYS CYS A . n A 1 97 GLN 97 97 97 GLN GLN A . n B 2 1 GLY 1 106 106 GLY GLY B . n B 2 2 GLY 2 107 107 GLY GLY B . n B 2 3 VAL 3 108 108 VAL VAL B . n B 2 4 LYS 4 109 109 LYS LYS B . n B 2 5 VAL 5 110 110 VAL VAL B . n B 2 6 GLU 6 111 111 GLU GLU B . n B 2 7 ARG 7 112 112 ARG ARG B . n B 2 8 GLN 8 113 113 GLN GLN B . n B 2 9 VAL 9 114 114 VAL VAL B . n B 2 10 PHE 10 115 115 PHE PHE B . n B 2 11 GLY 11 116 116 GLY GLY B . n B 2 12 GLU 12 117 117 GLU GLU B . n B 2 13 ALA 13 118 118 ALA ALA B . n B 2 14 THR 14 119 119 THR THR B . n B 2 15 LYS 15 120 120 LYS LYS B . n B 2 16 GLN 16 121 121 GLN GLN B . n B 2 17 PRO 17 122 122 PRO PRO B . n B 2 18 GLY 18 123 123 GLY GLY B . n B 2 19 ILE 19 124 124 ILE ILE B . n B 2 20 THR 20 125 125 THR THR B . n B 2 21 PHE 21 126 126 PHE PHE B . n B 2 22 ILE 22 127 127 ILE ILE B . n B 2 23 ALA 23 128 128 ALA ALA B . n B 2 24 ALA 24 129 129 ALA ALA B . n B 2 25 LYS 25 130 130 LYS LYS B . n B 2 26 PHE 26 131 131 PHE PHE B . n B 2 27 ASP 27 132 132 ASP ASP B . n B 2 28 GLY 28 133 133 GLY GLY B . n B 2 29 ILE 29 134 134 ILE ILE B . n B 2 30 LEU 30 135 135 LEU LEU B . n B 2 31 GLY 31 136 136 GLY GLY B . n B 2 32 MET 32 137 137 MET MET B . n B 2 33 ALA 33 138 138 ALA ALA B . n B 2 34 TYR 34 139 139 TYR TYR B . n B 2 35 PRO 35 140 140 PRO PRO B . n B 2 36 ARG 36 141 141 ARG ARG B . n B 2 37 ILE 37 142 142 ILE ILE B . n B 2 38 SER 38 143 143 SER SER B . n B 2 39 VAL 39 144 144 VAL VAL B . n B 2 40 ASN 40 145 145 ASN ASN B . n B 2 41 ASN 41 146 146 ASN ASN B . n B 2 42 VAL 42 147 147 VAL VAL B . n B 2 43 LEU 43 148 148 LEU LEU B . n B 2 44 PRO 44 149 149 PRO PRO B . n B 2 45 VAL 45 150 150 VAL VAL B . n B 2 46 PHE 46 151 151 PHE PHE B . n B 2 47 ASP 47 152 152 ASP ASP B . n B 2 48 ASN 48 153 153 ASN ASN B . n B 2 49 LEU 49 154 154 LEU LEU B . n B 2 50 MET 50 155 155 MET MET B . n B 2 51 GLN 51 156 156 GLN GLN B . n B 2 52 GLN 52 157 157 GLN GLN B . n B 2 53 LYS 53 158 158 LYS LYS B . n B 2 54 LEU 54 159 159 LEU LEU B . n B 2 55 VAL 55 160 160 VAL VAL B . n B 2 56 ASP 56 161 161 ASP ASP B . n B 2 57 GLN 57 162 162 GLN GLN B . n B 2 58 ASN 58 163 163 ASN ASN B . n B 2 59 ILE 59 164 164 ILE ILE B . n B 2 60 PHE 60 165 165 PHE PHE B . n B 2 61 SER 61 166 166 SER SER B . n B 2 62 PHE 62 167 167 PHE PHE B . n B 2 63 TYR 63 168 168 TYR TYR B . n B 2 64 LEU 64 169 169 LEU LEU B . n B 2 65 SER 65 170 170 SER SER B . n B 2 66 ARG 66 171 171 ARG ARG B . n B 2 67 ASP 67 172 172 ASP ASP B . n B 2 68 PRO 68 173 173 PRO PRO B . n B 2 69 ASP 69 174 174 ASP ASP B . n B 2 70 ALA 70 175 175 ALA ALA B . n B 2 71 GLN 71 176 176 GLN GLN B . n B 2 72 PRO 72 177 177 PRO PRO B . n B 2 73 GLY 73 178 178 GLY GLY B . n B 2 74 GLY 74 179 179 GLY GLY B . n B 2 75 GLU 75 180 180 GLU GLU B . n B 2 76 LEU 76 181 181 LEU LEU B . n B 2 77 MET 77 182 182 MET MET B . n B 2 78 LEU 78 183 183 LEU LEU B . n B 2 79 GLY 79 184 184 GLY GLY B . n B 2 80 GLY 80 185 185 GLY GLY B . n B 2 81 THR 81 186 186 THR THR B . n B 2 82 ASP 82 187 187 ASP ASP B . n B 2 83 SER 83 188 188 SER SER B . n B 2 84 LYS 84 189 189 LYS LYS B . n B 2 85 TYR 85 190 190 TYR TYR B . n B 2 86 TYR 86 191 191 TYR TYR B . n B 2 87 LYS 87 192 192 LYS LYS B . n B 2 88 GLY 88 193 193 GLY GLY B . n B 2 89 SER 89 194 194 SER SER B . n B 2 90 LEU 90 195 195 LEU LEU B . n B 2 91 SER 91 196 196 SER SER B . n B 2 92 TYR 92 197 197 TYR TYR B . n B 2 93 LEU 93 198 198 LEU LEU B . n B 2 94 ASN 94 199 199 ASN ASN B . n B 2 95 VAL 95 200 200 VAL VAL B . n B 2 96 THR 96 201 201 THR THR B . n B 2 97 ARG 97 202 202 ARG ARG B . n B 2 98 LYS 98 203 203 LYS LYS B . n B 2 99 ALA 99 204 204 ALA ALA B . n B 2 100 TYR 100 205 205 TYR TYR B . n B 2 101 TRP 101 206 206 TRP TRP B . n B 2 102 GLN 102 207 207 GLN GLN B . n B 2 103 VAL 103 208 208 VAL VAL B . n B 2 104 HIS 104 209 209 HIS HIS B . n B 2 105 LEU 105 210 210 LEU LEU B . n B 2 106 ASP 106 211 211 ASP ASP B . n B 2 107 GLN 107 212 212 GLN GLN B . n B 2 108 VAL 108 213 213 VAL VAL B . n B 2 109 GLU 109 214 214 GLU GLU B . n B 2 110 VAL 110 215 215 VAL VAL B . n B 2 111 ALA 111 216 216 ALA ALA B . n B 2 112 SER 112 217 217 SER SER B . n B 2 113 GLY 113 218 218 GLY GLY B . n B 2 114 LEU 114 219 219 LEU LEU B . n B 2 115 THR 115 220 220 THR THR B . n B 2 116 LEU 116 221 221 LEU LEU B . n B 2 117 CYS 117 222 222 CYS CYS B . n B 2 118 LYS 118 223 223 LYS LYS B . n B 2 119 GLU 119 224 224 GLU GLU B . n B 2 120 GLY 120 225 225 GLY GLY B . n B 2 121 CYS 121 226 226 CYS CYS B . n B 2 122 GLU 122 227 227 GLU GLU B . n B 2 123 ALA 123 228 228 ALA ALA B . n B 2 124 ILE 124 229 229 ILE ILE B . n B 2 125 VAL 125 230 230 VAL VAL B . n B 2 126 ASP 126 231 231 ASP ASP B . n B 2 127 THR 127 232 232 THR THR B . n B 2 128 GLY 128 233 233 GLY GLY B . n B 2 129 THR 129 234 234 THR THR B . n B 2 130 SER 130 235 235 SER SER B . n B 2 131 LEU 131 236 236 LEU LEU B . n B 2 132 MET 132 237 237 MET MET B . n B 2 133 VAL 133 238 238 VAL VAL B . n B 2 134 GLY 134 239 239 GLY GLY B . n B 2 135 PRO 135 240 240 PRO PRO B . n B 2 136 VAL 136 241 241 VAL VAL B . n B 2 137 ASP 137 242 242 ASP ASP B . n B 2 138 GLU 138 243 243 GLU GLU B . n B 2 139 VAL 139 244 244 VAL VAL B . n B 2 140 ARG 140 245 245 ARG ARG B . n B 2 141 GLU 141 246 246 GLU GLU B . n B 2 142 LEU 142 247 247 LEU LEU B . n B 2 143 GLN 143 248 248 GLN GLN B . n B 2 144 LYS 144 249 249 LYS LYS B . n B 2 145 ALA 145 250 250 ALA ALA B . n B 2 146 ILE 146 251 251 ILE ILE B . n B 2 147 GLY 147 252 252 GLY GLY B . n B 2 148 ALA 148 253 253 ALA ALA B . n B 2 149 VAL 149 254 254 VAL VAL B . n B 2 150 PRO 150 255 255 PRO PRO B . n B 2 151 LEU 151 256 256 LEU LEU B . n B 2 152 ILE 152 257 257 ILE ILE B . n B 2 153 GLN 153 258 258 GLN GLN B . n B 2 154 GLY 154 259 259 GLY GLY B . n B 2 155 GLU 155 260 260 GLU GLU B . n B 2 156 TYR 156 261 261 TYR TYR B . n B 2 157 MET 157 262 262 MET MET B . n B 2 158 ILE 158 263 263 ILE ILE B . n B 2 159 PRO 159 264 264 PRO PRO B . n B 2 160 CYS 160 265 265 CYS CYS B . n B 2 161 GLU 161 266 266 GLU GLU B . n B 2 162 LYS 162 267 267 LYS LYS B . n B 2 163 VAL 163 268 268 VAL VAL B . n B 2 164 SER 164 269 269 SER SER B . n B 2 165 THR 165 270 270 THR THR B . n B 2 166 LEU 166 271 271 LEU LEU B . n B 2 167 PRO 167 272 272 PRO PRO B . n B 2 168 ALA 168 273 273 ALA ALA B . n B 2 169 ILE 169 274 274 ILE ILE B . n B 2 170 THR 170 275 275 THR THR B . n B 2 171 LEU 171 276 276 LEU LEU B . n B 2 172 LYS 172 277 277 LYS LYS B . n B 2 173 LEU 173 278 278 LEU LEU B . n B 2 174 GLY 174 279 279 GLY GLY B . n B 2 175 GLY 175 280 280 GLY GLY B . n B 2 176 LYS 176 281 281 LYS LYS B . n B 2 177 GLY 177 282 282 GLY GLY B . n B 2 178 TYR 178 283 283 TYR TYR B . n B 2 179 LYS 179 284 284 LYS LYS B . n B 2 180 LEU 180 285 285 LEU LEU B . n B 2 181 SER 181 286 286 SER SER B . n B 2 182 PRO 182 287 287 PRO PRO B . n B 2 183 GLU 183 288 288 GLU GLU B . n B 2 184 ASP 184 289 289 ASP ASP B . n B 2 185 TYR 185 290 290 TYR TYR B . n B 2 186 THR 186 291 291 THR THR B . n B 2 187 LEU 187 292 292 LEU LEU B . n B 2 188 LYS 188 293 293 LYS LYS B . n B 2 189 VAL 189 294 294 VAL VAL B . n B 2 190 SER 190 295 295 SER SER B . n B 2 191 GLN 191 296 296 GLN GLN B . n B 2 192 ALA 192 297 297 ALA ALA B . n B 2 193 GLY 193 298 298 GLY GLY B . n B 2 194 LYS 194 299 299 LYS LYS B . n B 2 195 THR 195 300 300 THR THR B . n B 2 196 LEU 196 301 301 LEU LEU B . n B 2 197 CYS 197 302 302 CYS CYS B . n B 2 198 LEU 198 303 303 LEU LEU B . n B 2 199 SER 199 304 304 SER SER B . n B 2 200 GLY 200 305 305 GLY GLY B . n B 2 201 PHE 201 306 306 PHE PHE B . n B 2 202 MET 202 307 307 MET MET B . n B 2 203 GLY 203 308 308 GLY GLY B . n B 2 204 MET 204 309 309 MET MET B . n B 2 205 ASP 205 310 310 ASP ASP B . n B 2 206 ILE 206 311 311 ILE ILE B . n B 2 207 PRO 207 312 312 PRO PRO B . n B 2 208 PRO 208 313 313 PRO PRO B . n B 2 209 PRO 209 314 314 PRO PRO B . n B 2 210 SER 210 315 315 SER SER B . n B 2 211 GLY 211 316 316 GLY GLY B . n B 2 212 PRO 212 317 317 PRO PRO B . n B 2 213 LEU 213 318 318 LEU LEU B . n B 2 214 TRP 214 319 319 TRP TRP B . n B 2 215 ILE 215 320 320 ILE ILE B . n B 2 216 LEU 216 321 321 LEU LEU B . n B 2 217 GLY 217 322 322 GLY GLY B . n B 2 218 ASP 218 323 323 ASP ASP B . n B 2 219 VAL 219 324 324 VAL VAL B . n B 2 220 PHE 220 325 325 PHE PHE B . n B 2 221 ILE 221 326 326 ILE ILE B . n B 2 222 GLY 222 327 327 GLY GLY B . n B 2 223 ARG 223 328 328 ARG ARG B . n B 2 224 TYR 224 329 329 TYR TYR B . n B 2 225 TYR 225 330 330 TYR TYR B . n B 2 226 THR 226 331 331 THR THR B . n B 2 227 VAL 227 332 332 VAL VAL B . n B 2 228 PHE 228 333 333 PHE PHE B . n B 2 229 ASP 229 334 334 ASP ASP B . n B 2 230 ARG 230 335 335 ARG ARG B . n B 2 231 ASP 231 336 336 ASP ASP B . n B 2 232 ASN 232 337 337 ASN ASN B . n B 2 233 ASN 233 338 338 ASN ASN B . n B 2 234 ARG 234 339 339 ARG ARG B . n B 2 235 VAL 235 340 340 VAL VAL B . n B 2 236 GLY 236 341 341 GLY GLY B . n B 2 237 PHE 237 342 342 PHE PHE B . n B 2 238 ALA 238 343 343 ALA ALA B . n B 2 239 GLU 239 344 344 GLU GLU B . n B 2 240 ALA 240 345 345 ALA ALA B . n B 2 241 ALA 241 346 346 ALA ALA B . n C 3 1 IVA 1 1 1 IVA IVA I . n C 3 2 VAL 2 2 2 VAL VAL I . n C 3 3 VAL 3 3 3 VAL VAL I . n C 3 4 STA 4 4 4 STA STA I . n C 3 5 ALA 5 5 5 ALA ALA I . n C 3 6 STA 6 6 6 STA STA I . n D 1 1 GLY 1 1 1 GLY GLY C . n D 1 2 PRO 2 2 2 PRO PRO C . n D 1 3 ILE 3 3 3 ILE ILE C . n D 1 4 PRO 4 4 4 PRO PRO C . n D 1 5 GLU 5 5 5 GLU GLU C . n D 1 6 VAL 6 6 6 VAL VAL C . n D 1 7 LEU 7 7 7 LEU LEU C . n D 1 8 LYS 8 8 8 LYS LYS C . n D 1 9 ASN 9 9 9 ASN ASN C . n D 1 10 TYR 10 10 10 TYR TYR C . n D 1 11 MET 11 11 11 MET MET C . n D 1 12 ASP 12 12 12 ASP ASP C . n D 1 13 ALA 13 13 13 ALA ALA C . n D 1 14 GLN 14 14 14 GLN GLN C . n D 1 15 TYR 15 15 15 TYR TYR C . n D 1 16 TYR 16 16 16 TYR TYR C . n D 1 17 GLY 17 17 17 GLY GLY C . n D 1 18 GLU 18 18 18 GLU GLU C . n D 1 19 ILE 19 19 19 ILE ILE C . n D 1 20 GLY 20 20 20 GLY GLY C . n D 1 21 ILE 21 21 21 ILE ILE C . n D 1 22 GLY 22 22 22 GLY GLY C . n D 1 23 THR 23 23 23 THR THR C . n D 1 24 PRO 24 24 24 PRO PRO C . n D 1 25 PRO 25 25 25 PRO PRO C . n D 1 26 GLN 26 26 26 GLN GLN C . n D 1 27 CYS 27 27 27 CYS CYS C . n D 1 28 PHE 28 28 28 PHE PHE C . n D 1 29 THR 29 29 29 THR THR C . n D 1 30 VAL 30 30 30 VAL VAL C . n D 1 31 VAL 31 31 31 VAL VAL C . n D 1 32 PHE 32 32 32 PHE PHE C . n D 1 33 ASP 33 33 33 ASP ASP C . n D 1 34 THR 34 34 34 THR THR C . n D 1 35 GLY 35 35 35 GLY GLY C . n D 1 36 SER 36 36 36 SER SER C . n D 1 37 SER 37 37 37 SER SER C . n D 1 38 ASN 38 38 38 ASN ASN C . n D 1 39 LEU 39 39 39 LEU LEU C . n D 1 40 TRP 40 40 40 TRP TRP C . n D 1 41 VAL 41 41 41 VAL VAL C . n D 1 42 PRO 42 42 42 PRO PRO C . n D 1 43 SER 43 43 43 SER SER C . n D 1 44 ILE 44 44 44 ILE ILE C . n D 1 45 HIS 45 45 45 HIS HIS C . n D 1 46 CYS 46 46 46 CYS CYS C . n D 1 47 LYS 47 47 47 LYS LYS C . n D 1 48 LEU 48 48 48 LEU LEU C . n D 1 49 LEU 49 49 49 LEU LEU C . n D 1 50 ASP 50 50 50 ASP ASP C . n D 1 51 ILE 51 51 51 ILE ILE C . n D 1 52 ALA 52 52 52 ALA ALA C . n D 1 53 CYS 53 53 53 CYS CYS C . n D 1 54 TRP 54 54 54 TRP TRP C . n D 1 55 ILE 55 55 55 ILE ILE C . n D 1 56 HIS 56 56 56 HIS HIS C . n D 1 57 HIS 57 57 57 HIS HIS C . n D 1 58 LYS 58 58 58 LYS LYS C . n D 1 59 TYR 59 59 59 TYR TYR C . n D 1 60 ASN 60 60 60 ASN ASN C . n D 1 61 SER 61 61 61 SER SER C . n D 1 62 ASP 62 62 62 ASP ASP C . n D 1 63 LYS 63 63 63 LYS LYS C . n D 1 64 SER 64 64 64 SER SER C . n D 1 65 SER 65 65 65 SER SER C . n D 1 66 THR 66 66 66 THR THR C . n D 1 67 TYR 67 67 67 TYR TYR C . n D 1 68 VAL 68 68 68 VAL VAL C . n D 1 69 LYS 69 69 69 LYS LYS C . n D 1 70 ASN 70 70 70 ASN ASN C . n D 1 71 GLY 71 71 71 GLY GLY C . n D 1 72 THR 72 72 72 THR THR C . n D 1 73 SER 73 73 73 SER SER C . n D 1 74 PHE 74 74 74 PHE PHE C . n D 1 75 ASP 75 75 75 ASP ASP C . n D 1 76 ILE 76 76 76 ILE ILE C . n D 1 77 HIS 77 77 77 HIS HIS C . n D 1 78 TYR 78 78 78 TYR TYR C . n D 1 79 GLY 79 79 79 GLY GLY C . n D 1 80 SER 80 80 80 SER SER C . n D 1 81 GLY 81 81 81 GLY GLY C . n D 1 82 SER 82 82 82 SER SER C . n D 1 83 LEU 83 83 83 LEU LEU C . n D 1 84 SER 84 84 84 SER SER C . n D 1 85 GLY 85 85 85 GLY GLY C . n D 1 86 TYR 86 86 86 TYR TYR C . n D 1 87 LEU 87 87 87 LEU LEU C . n D 1 88 SER 88 88 88 SER SER C . n D 1 89 GLN 89 89 89 GLN GLN C . n D 1 90 ASP 90 90 90 ASP ASP C . n D 1 91 THR 91 91 91 THR THR C . n D 1 92 VAL 92 92 92 VAL VAL C . n D 1 93 SER 93 93 93 SER SER C . n D 1 94 VAL 94 94 94 VAL VAL C . n D 1 95 PRO 95 95 95 PRO PRO C . n D 1 96 CYS 96 96 96 CYS CYS C . n D 1 97 GLN 97 97 97 GLN GLN C . n E 2 1 GLY 1 106 106 GLY GLY D . n E 2 2 GLY 2 107 107 GLY GLY D . n E 2 3 VAL 3 108 108 VAL VAL D . n E 2 4 LYS 4 109 109 LYS LYS D . n E 2 5 VAL 5 110 110 VAL VAL D . n E 2 6 GLU 6 111 111 GLU GLU D . n E 2 7 ARG 7 112 112 ARG ARG D . n E 2 8 GLN 8 113 113 GLN GLN D . n E 2 9 VAL 9 114 114 VAL VAL D . n E 2 10 PHE 10 115 115 PHE PHE D . n E 2 11 GLY 11 116 116 GLY GLY D . n E 2 12 GLU 12 117 117 GLU GLU D . n E 2 13 ALA 13 118 118 ALA ALA D . n E 2 14 THR 14 119 119 THR THR D . n E 2 15 LYS 15 120 120 LYS LYS D . n E 2 16 GLN 16 121 121 GLN GLN D . n E 2 17 PRO 17 122 122 PRO PRO D . n E 2 18 GLY 18 123 123 GLY GLY D . n E 2 19 ILE 19 124 124 ILE ILE D . n E 2 20 THR 20 125 125 THR THR D . n E 2 21 PHE 21 126 126 PHE PHE D . n E 2 22 ILE 22 127 127 ILE ILE D . n E 2 23 ALA 23 128 128 ALA ALA D . n E 2 24 ALA 24 129 129 ALA ALA D . n E 2 25 LYS 25 130 130 LYS LYS D . n E 2 26 PHE 26 131 131 PHE PHE D . n E 2 27 ASP 27 132 132 ASP ASP D . n E 2 28 GLY 28 133 133 GLY GLY D . n E 2 29 ILE 29 134 134 ILE ILE D . n E 2 30 LEU 30 135 135 LEU LEU D . n E 2 31 GLY 31 136 136 GLY GLY D . n E 2 32 MET 32 137 137 MET MET D . n E 2 33 ALA 33 138 138 ALA ALA D . n E 2 34 TYR 34 139 139 TYR TYR D . n E 2 35 PRO 35 140 140 PRO PRO D . n E 2 36 ARG 36 141 141 ARG ARG D . n E 2 37 ILE 37 142 142 ILE ILE D . n E 2 38 SER 38 143 143 SER SER D . n E 2 39 VAL 39 144 144 VAL VAL D . n E 2 40 ASN 40 145 145 ASN ASN D . n E 2 41 ASN 41 146 146 ASN ASN D . n E 2 42 VAL 42 147 147 VAL VAL D . n E 2 43 LEU 43 148 148 LEU LEU D . n E 2 44 PRO 44 149 149 PRO PRO D . n E 2 45 VAL 45 150 150 VAL VAL D . n E 2 46 PHE 46 151 151 PHE PHE D . n E 2 47 ASP 47 152 152 ASP ASP D . n E 2 48 ASN 48 153 153 ASN ASN D . n E 2 49 LEU 49 154 154 LEU LEU D . n E 2 50 MET 50 155 155 MET MET D . n E 2 51 GLN 51 156 156 GLN GLN D . n E 2 52 GLN 52 157 157 GLN GLN D . n E 2 53 LYS 53 158 158 LYS LYS D . n E 2 54 LEU 54 159 159 LEU LEU D . n E 2 55 VAL 55 160 160 VAL VAL D . n E 2 56 ASP 56 161 161 ASP ASP D . n E 2 57 GLN 57 162 162 GLN GLN D . n E 2 58 ASN 58 163 163 ASN ASN D . n E 2 59 ILE 59 164 164 ILE ILE D . n E 2 60 PHE 60 165 165 PHE PHE D . n E 2 61 SER 61 166 166 SER SER D . n E 2 62 PHE 62 167 167 PHE PHE D . n E 2 63 TYR 63 168 168 TYR TYR D . n E 2 64 LEU 64 169 169 LEU LEU D . n E 2 65 SER 65 170 170 SER SER D . n E 2 66 ARG 66 171 171 ARG ARG D . n E 2 67 ASP 67 172 172 ASP ASP D . n E 2 68 PRO 68 173 173 PRO PRO D . n E 2 69 ASP 69 174 174 ASP ASP D . n E 2 70 ALA 70 175 175 ALA ALA D . n E 2 71 GLN 71 176 176 GLN GLN D . n E 2 72 PRO 72 177 177 PRO PRO D . n E 2 73 GLY 73 178 178 GLY GLY D . n E 2 74 GLY 74 179 179 GLY GLY D . n E 2 75 GLU 75 180 180 GLU GLU D . n E 2 76 LEU 76 181 181 LEU LEU D . n E 2 77 MET 77 182 182 MET MET D . n E 2 78 LEU 78 183 183 LEU LEU D . n E 2 79 GLY 79 184 184 GLY GLY D . n E 2 80 GLY 80 185 185 GLY GLY D . n E 2 81 THR 81 186 186 THR THR D . n E 2 82 ASP 82 187 187 ASP ASP D . n E 2 83 SER 83 188 188 SER SER D . n E 2 84 LYS 84 189 189 LYS LYS D . n E 2 85 TYR 85 190 190 TYR TYR D . n E 2 86 TYR 86 191 191 TYR TYR D . n E 2 87 LYS 87 192 192 LYS LYS D . n E 2 88 GLY 88 193 193 GLY GLY D . n E 2 89 SER 89 194 194 SER SER D . n E 2 90 LEU 90 195 195 LEU LEU D . n E 2 91 SER 91 196 196 SER SER D . n E 2 92 TYR 92 197 197 TYR TYR D . n E 2 93 LEU 93 198 198 LEU LEU D . n E 2 94 ASN 94 199 199 ASN ASN D . n E 2 95 VAL 95 200 200 VAL VAL D . n E 2 96 THR 96 201 201 THR THR D . n E 2 97 ARG 97 202 202 ARG ARG D . n E 2 98 LYS 98 203 203 LYS LYS D . n E 2 99 ALA 99 204 204 ALA ALA D . n E 2 100 TYR 100 205 205 TYR TYR D . n E 2 101 TRP 101 206 206 TRP TRP D . n E 2 102 GLN 102 207 207 GLN GLN D . n E 2 103 VAL 103 208 208 VAL VAL D . n E 2 104 HIS 104 209 209 HIS HIS D . n E 2 105 LEU 105 210 210 LEU LEU D . n E 2 106 ASP 106 211 211 ASP ASP D . n E 2 107 GLN 107 212 212 GLN GLN D . n E 2 108 VAL 108 213 213 VAL VAL D . n E 2 109 GLU 109 214 214 GLU GLU D . n E 2 110 VAL 110 215 215 VAL VAL D . n E 2 111 ALA 111 216 216 ALA ALA D . n E 2 112 SER 112 217 217 SER SER D . n E 2 113 GLY 113 218 218 GLY GLY D . n E 2 114 LEU 114 219 219 LEU LEU D . n E 2 115 THR 115 220 220 THR THR D . n E 2 116 LEU 116 221 221 LEU LEU D . n E 2 117 CYS 117 222 222 CYS CYS D . n E 2 118 LYS 118 223 223 LYS LYS D . n E 2 119 GLU 119 224 224 GLU GLU D . n E 2 120 GLY 120 225 225 GLY GLY D . n E 2 121 CYS 121 226 226 CYS CYS D . n E 2 122 GLU 122 227 227 GLU GLU D . n E 2 123 ALA 123 228 228 ALA ALA D . n E 2 124 ILE 124 229 229 ILE ILE D . n E 2 125 VAL 125 230 230 VAL VAL D . n E 2 126 ASP 126 231 231 ASP ASP D . n E 2 127 THR 127 232 232 THR THR D . n E 2 128 GLY 128 233 233 GLY GLY D . n E 2 129 THR 129 234 234 THR THR D . n E 2 130 SER 130 235 235 SER SER D . n E 2 131 LEU 131 236 236 LEU LEU D . n E 2 132 MET 132 237 237 MET MET D . n E 2 133 VAL 133 238 238 VAL VAL D . n E 2 134 GLY 134 239 239 GLY GLY D . n E 2 135 PRO 135 240 240 PRO PRO D . n E 2 136 VAL 136 241 241 VAL VAL D . n E 2 137 ASP 137 242 242 ASP ASP D . n E 2 138 GLU 138 243 243 GLU GLU D . n E 2 139 VAL 139 244 244 VAL VAL D . n E 2 140 ARG 140 245 245 ARG ARG D . n E 2 141 GLU 141 246 246 GLU GLU D . n E 2 142 LEU 142 247 247 LEU LEU D . n E 2 143 GLN 143 248 248 GLN GLN D . n E 2 144 LYS 144 249 249 LYS LYS D . n E 2 145 ALA 145 250 250 ALA ALA D . n E 2 146 ILE 146 251 251 ILE ILE D . n E 2 147 GLY 147 252 252 GLY GLY D . n E 2 148 ALA 148 253 253 ALA ALA D . n E 2 149 VAL 149 254 254 VAL VAL D . n E 2 150 PRO 150 255 255 PRO PRO D . n E 2 151 LEU 151 256 256 LEU LEU D . n E 2 152 ILE 152 257 257 ILE ILE D . n E 2 153 GLN 153 258 258 GLN GLN D . n E 2 154 GLY 154 259 259 GLY GLY D . n E 2 155 GLU 155 260 260 GLU GLU D . n E 2 156 TYR 156 261 261 TYR TYR D . n E 2 157 MET 157 262 262 MET MET D . n E 2 158 ILE 158 263 263 ILE ILE D . n E 2 159 PRO 159 264 264 PRO PRO D . n E 2 160 CYS 160 265 265 CYS CYS D . n E 2 161 GLU 161 266 266 GLU GLU D . n E 2 162 LYS 162 267 267 LYS LYS D . n E 2 163 VAL 163 268 268 VAL VAL D . n E 2 164 SER 164 269 269 SER SER D . n E 2 165 THR 165 270 270 THR THR D . n E 2 166 LEU 166 271 271 LEU LEU D . n E 2 167 PRO 167 272 272 PRO PRO D . n E 2 168 ALA 168 273 273 ALA ALA D . n E 2 169 ILE 169 274 274 ILE ILE D . n E 2 170 THR 170 275 275 THR THR D . n E 2 171 LEU 171 276 276 LEU LEU D . n E 2 172 LYS 172 277 277 LYS LYS D . n E 2 173 LEU 173 278 278 LEU LEU D . n E 2 174 GLY 174 279 279 GLY GLY D . n E 2 175 GLY 175 280 280 GLY GLY D . n E 2 176 LYS 176 281 281 LYS LYS D . n E 2 177 GLY 177 282 282 GLY GLY D . n E 2 178 TYR 178 283 283 TYR TYR D . n E 2 179 LYS 179 284 284 LYS LYS D . n E 2 180 LEU 180 285 285 LEU LEU D . n E 2 181 SER 181 286 286 SER SER D . n E 2 182 PRO 182 287 287 PRO PRO D . n E 2 183 GLU 183 288 288 GLU GLU D . n E 2 184 ASP 184 289 289 ASP ASP D . n E 2 185 TYR 185 290 290 TYR TYR D . n E 2 186 THR 186 291 291 THR THR D . n E 2 187 LEU 187 292 292 LEU LEU D . n E 2 188 LYS 188 293 293 LYS LYS D . n E 2 189 VAL 189 294 294 VAL VAL D . n E 2 190 SER 190 295 295 SER SER D . n E 2 191 GLN 191 296 296 GLN GLN D . n E 2 192 ALA 192 297 297 ALA ALA D . n E 2 193 GLY 193 298 298 GLY GLY D . n E 2 194 LYS 194 299 299 LYS LYS D . n E 2 195 THR 195 300 300 THR THR D . n E 2 196 LEU 196 301 301 LEU LEU D . n E 2 197 CYS 197 302 302 CYS CYS D . n E 2 198 LEU 198 303 303 LEU LEU D . n E 2 199 SER 199 304 304 SER SER D . n E 2 200 GLY 200 305 305 GLY GLY D . n E 2 201 PHE 201 306 306 PHE PHE D . n E 2 202 MET 202 307 307 MET MET D . n E 2 203 GLY 203 308 308 GLY GLY D . n E 2 204 MET 204 309 309 MET MET D . n E 2 205 ASP 205 310 310 ASP ASP D . n E 2 206 ILE 206 311 311 ILE ILE D . n E 2 207 PRO 207 312 312 PRO PRO D . n E 2 208 PRO 208 313 313 PRO PRO D . n E 2 209 PRO 209 314 314 PRO PRO D . n E 2 210 SER 210 315 315 SER SER D . n E 2 211 GLY 211 316 316 GLY GLY D . n E 2 212 PRO 212 317 317 PRO PRO D . n E 2 213 LEU 213 318 318 LEU LEU D . n E 2 214 TRP 214 319 319 TRP TRP D . n E 2 215 ILE 215 320 320 ILE ILE D . n E 2 216 LEU 216 321 321 LEU LEU D . n E 2 217 GLY 217 322 322 GLY GLY D . n E 2 218 ASP 218 323 323 ASP ASP D . n E 2 219 VAL 219 324 324 VAL VAL D . n E 2 220 PHE 220 325 325 PHE PHE D . n E 2 221 ILE 221 326 326 ILE ILE D . n E 2 222 GLY 222 327 327 GLY GLY D . n E 2 223 ARG 223 328 328 ARG ARG D . n E 2 224 TYR 224 329 329 TYR TYR D . n E 2 225 TYR 225 330 330 TYR TYR D . n E 2 226 THR 226 331 331 THR THR D . n E 2 227 VAL 227 332 332 VAL VAL D . n E 2 228 PHE 228 333 333 PHE PHE D . n E 2 229 ASP 229 334 334 ASP ASP D . n E 2 230 ARG 230 335 335 ARG ARG D . n E 2 231 ASP 231 336 336 ASP ASP D . n E 2 232 ASN 232 337 337 ASN ASN D . n E 2 233 ASN 233 338 338 ASN ASN D . n E 2 234 ARG 234 339 339 ARG ARG D . n E 2 235 VAL 235 340 340 VAL VAL D . n E 2 236 GLY 236 341 341 GLY GLY D . n E 2 237 PHE 237 342 342 PHE PHE D . n E 2 238 ALA 238 343 343 ALA ALA D . n E 2 239 GLU 239 344 344 GLU GLU D . n E 2 240 ALA 240 345 345 ALA ALA D . n E 2 241 ALA 241 346 346 ALA ALA D . n F 3 1 IVA 1 1 1 IVA IVA J . n F 3 2 VAL 2 2 2 VAL VAL J . n F 3 3 VAL 3 3 3 VAL VAL J . n F 3 4 STA 4 4 4 STA STA J . n F 3 5 ALA 5 5 5 ALA ALA J . n F 3 6 STA 6 6 6 STA STA J . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero G 4 NAG 1 E NAG 1 A NAG 1 n G 4 NAG 2 E NAG 2 A NAG 2 n G 4 BMA 3 E BMA 3 A MAN 3 n G 4 MAN 4 E MAN 4 A MAN 8 n H 4 NAG 1 F NAG 1 C NAG 1 n H 4 NAG 2 F NAG 2 C NAG 2 n H 4 BMA 3 F BMA 3 C MAN 3 n H 4 MAN 4 F MAN 4 C MAN 8 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NAG 1 1 1 NAG NAG B . J 5 NAG 1 1 1 NAG NAG D . K 6 HOH 1 102 1 HOH HOH A . K 6 HOH 2 103 2 HOH HOH A . K 6 HOH 3 104 3 HOH HOH A . K 6 HOH 4 105 4 HOH HOH A . K 6 HOH 5 106 5 HOH HOH A . K 6 HOH 6 107 6 HOH HOH A . K 6 HOH 7 108 10 HOH HOH A . K 6 HOH 8 109 11 HOH HOH A . K 6 HOH 9 110 28 HOH HOH A . L 6 HOH 1 29 9 HOH HOH B . L 6 HOH 2 32 12 HOH HOH B . L 6 HOH 3 33 13 HOH HOH B . L 6 HOH 4 34 15 HOH HOH B . L 6 HOH 5 35 21 HOH HOH B . L 6 HOH 6 36 22 HOH HOH B . L 6 HOH 7 37 24 HOH HOH B . L 6 HOH 8 38 25 HOH HOH B . L 6 HOH 9 39 26 HOH HOH B . L 6 HOH 10 41 29 HOH HOH B . L 6 HOH 11 42 118 HOH HOH B . L 6 HOH 12 43 120 HOH HOH B . L 6 HOH 13 44 122 HOH HOH B . M 6 HOH 1 102 1 HOH HOH C . M 6 HOH 2 103 2 HOH HOH C . M 6 HOH 3 104 4 HOH HOH C . M 6 HOH 4 105 5 HOH HOH C . M 6 HOH 5 106 6 HOH HOH C . M 6 HOH 6 107 9 HOH HOH C . M 6 HOH 7 108 10 HOH HOH C . M 6 HOH 8 109 11 HOH HOH C . M 6 HOH 9 110 28 HOH HOH C . N 6 HOH 1 3 3 HOH HOH D . N 6 HOH 2 10 12 HOH HOH D . N 6 HOH 3 11 13 HOH HOH D . N 6 HOH 4 12 15 HOH HOH D . N 6 HOH 5 13 21 HOH HOH D . N 6 HOH 6 14 22 HOH HOH D . N 6 HOH 7 15 24 HOH HOH D . N 6 HOH 8 16 25 HOH HOH D . N 6 HOH 9 17 26 HOH HOH D . N 6 HOH 10 19 29 HOH HOH D . N 6 HOH 11 20 118 HOH HOH D . N 6 HOH 12 21 120 HOH HOH D . N 6 HOH 13 22 122 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 97 ? CG ? A GLN 97 CG 2 1 Y 1 A GLN 97 ? CD ? A GLN 97 CD 3 1 Y 1 A GLN 97 ? OE1 ? A GLN 97 OE1 4 1 Y 1 A GLN 97 ? NE2 ? A GLN 97 NE2 5 1 Y 1 C GLN 97 ? CG ? D GLN 97 CG 6 1 Y 1 C GLN 97 ? CD ? D GLN 97 CD 7 1 Y 1 C GLN 97 ? OE1 ? D GLN 97 OE1 8 1 Y 1 C GLN 97 ? NE2 ? D GLN 97 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.0 ? 1 X-PLOR refinement 3.0 ? 2 X-PLOR phasing 3.0 ? 3 # _cell.entry_id 1LYB _cell.length_a 125.900 _cell.length_b 125.900 _cell.length_c 104.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1LYB _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1LYB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.16 _exptl_crystal.density_percent_sol 61.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1LYB _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.179 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THERE ARE TWO N-LINKED OLIGOSACCHARIDES ATTACHED AT RESIDUES ASN 70 AND ASN 199 OF EACH MOLECULE. FOUR SUGARS WERE INCLUDED FOR REFINEMENT AT ASN 70 AND A SINGLE N-LINKED NAG AT ASN 199. THE SUGARS ARE LINKED AS FOLLOWS: ASN A 70 -- NAG A 1 -- NAG A 2 -- MAN A 3 -- MAN A 8 ASN B 199 -- NAG B 1 ASN C 70 -- NAG C 1 -- NAG C 2 -- MAN C 3 -- MAN C 8 ASN D 199 -- NAG D 1 ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 5282 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 128 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 5454 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.2 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.735300 _struct_ncs_oper.matrix[1][2] 0.674700 _struct_ncs_oper.matrix[1][3] -0.064150 _struct_ncs_oper.matrix[2][1] 0.608800 _struct_ncs_oper.matrix[2][2] -0.699200 _struct_ncs_oper.matrix[2][3] -0.374800 _struct_ncs_oper.matrix[3][1] -0.297800 _struct_ncs_oper.matrix[3][2] 0.236600 _struct_ncs_oper.matrix[3][3] -0.924900 _struct_ncs_oper.vector[1] -9.57840 _struct_ncs_oper.vector[2] 129.91299 _struct_ncs_oper.vector[3] 10.65180 # _database_PDB_matrix.entry_id 1LYB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1LYB _struct.title 'CRYSTAL STRUCTURES OF NATIVE AND INHIBITED FORMS OF HUMAN CATHEPSIN D: IMPLICATIONS FOR LYSOSOMAL TARGETING AND DRUG DESIGN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LYB _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'LYSOSOMAL ASPARTIC PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 6 ? L N N 6 ? M N N 6 ? N N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP CATD_HUMAN 1 P07339 1 ;MQPSSLLPLALCLLAAPASALVRIPLHKFTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVPAVTEGPIPEVLKNYMDAQYY GEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPC QSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQ PGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL IQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRD NNRVGFAEAARL ; ? 2 UNP CATD_HUMAN 2 P07339 1 ;MQPSSLLPLALCLLAAPASALVRIPLHKFTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVPAVTEGPIPEVLKNYMDAQYY GEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPC QSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQ PGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL IQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRD NNRVGFAEAARL ; ? 3 PDB 1LYB 3 1LYB ? XVVXAX ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LYB A 1 ? 97 ? P07339 65 ? 161 ? 1 97 2 2 1LYB B 1 ? 241 ? P07339 170 ? 410 ? 106 346 3 1 1LYB C 1 ? 97 ? P07339 65 ? 161 ? 1 97 4 2 1LYB D 1 ? 241 ? P07339 170 ? 410 ? 106 346 5 3 1LYB I 1 ? 6 ? 1LYB 1 ? 6 ? 1 6 6 3 1LYB J 1 ? 6 ? 1LYB 1 ? 6 ? 1 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA hexameric 6 2 software_defined_assembly PQS trimeric 3 3 software_defined_assembly PQS trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 20830 ? 1 MORE -94 ? 1 'SSA (A^2)' 26050 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,G,I,K,L 1 2 D,E,F,H,J,M,N 2 1 A,B,C,G,I,K,L 3 1 D,E,F,H,J,M,N # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_664 -y+1,x-y+1,z-1/3 -0.5000000000 -0.8660254038 0.0000000000 62.9500000000 0.8660254038 -0.5000000000 0.0000000000 109.0325983365 0.0000000000 0.0000000000 1.0000000000 -34.7000000000 # _struct_biol.id 1 _struct_biol.details ;THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAINS *A* AND *B* WHEN APPLIED TO CHAINS *C* AND *D*, RESPECTIVELY. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 A11 LYS A 47 ? ILE A 55 ? LYS A 47 ILE A 55 1 ? 9 HELX_P HELX_P2 A21 ILE B 19 ? ALA B 24 ? ILE B 124 ALA B 129 1 ? 6 HELX_P HELX_P3 A31 PRO B 44 ? LEU B 54 ? PRO B 149 LEU B 159 1 ? 11 HELX_P HELX_P4 A41 PRO B 135 ? GLY B 147 ? PRO B 240 GLY B 252 1 ? 13 HELX_P HELX_P5 A51 PRO B 159 ? LEU B 166 ? PRO B 264 LEU B 271 1 ? 8 HELX_P HELX_P6 A61 SER B 181 ? THR B 186 ? SER B 286 THR B 291 1 ? 6 HELX_P HELX_P7 A71 GLY B 217 ? GLY B 222 ? GLY B 322 GLY B 327 1 ? 6 HELX_P HELX_P8 A12 LYS D 47 ? ILE D 55 ? LYS C 47 ILE C 55 1 ? 9 HELX_P HELX_P9 A22 ILE E 19 ? ALA E 24 ? ILE D 124 ALA D 129 1 ? 6 HELX_P HELX_P10 A32 PRO E 44 ? LEU E 54 ? PRO D 149 LEU D 159 1 ? 11 HELX_P HELX_P11 A42 PRO E 135 ? GLY E 147 ? PRO D 240 GLY D 252 1 ? 13 HELX_P HELX_P12 A52 PRO E 159 ? LEU E 166 ? PRO D 264 LEU D 271 1 ? 8 HELX_P HELX_P13 A62 SER E 181 ? THR E 186 ? SER D 286 THR D 291 1 ? 6 HELX_P HELX_P14 A72 GLY E 217 ? GLY E 222 ? GLY D 322 GLY D 327 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 27 A CYS 96 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 46 A CYS 53 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? B CYS 117 SG ? ? ? 1_555 B CYS 121 SG ? ? B CYS 222 B CYS 226 1_555 ? ? ? ? ? ? ? 2.001 ? ? disulf4 disulf ? ? B CYS 160 SG ? ? ? 1_555 B CYS 197 SG ? ? B CYS 265 B CYS 302 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf5 disulf ? ? D CYS 27 SG ? ? ? 1_555 D CYS 96 SG ? ? C CYS 27 C CYS 96 1_555 ? ? ? ? ? ? ? 2.018 ? ? disulf6 disulf ? ? D CYS 46 SG ? ? ? 1_555 D CYS 53 SG ? ? C CYS 46 C CYS 53 1_555 ? ? ? ? ? ? ? 1.987 ? ? disulf7 disulf ? ? E CYS 117 SG ? ? ? 1_555 E CYS 121 SG ? ? D CYS 222 D CYS 226 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf8 disulf ? ? E CYS 160 SG ? ? ? 1_555 E CYS 197 SG ? ? D CYS 265 D CYS 302 1_555 ? ? ? ? ? ? ? 2.024 ? ? covale1 covale one ? A ASN 70 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 70 E NAG 1 1_555 ? ? ? ? ? ? ? 1.485 ? N-Glycosylation covale2 covale one ? I NAG . C1 ? ? ? 1_555 B ASN 94 ND2 ? ? B NAG 1 B ASN 199 1_555 ? ? ? ? ? ? ? 1.487 ? N-Glycosylation covale3 covale both ? C IVA 1 C ? ? ? 1_555 C VAL 2 N ? ? I IVA 1 I VAL 2 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale4 covale both ? C VAL 3 C ? ? ? 1_555 C STA 4 N ? ? I VAL 3 I STA 4 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale5 covale both ? C STA 4 C ? ? ? 1_555 C ALA 5 N ? ? I STA 4 I ALA 5 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? C ALA 5 C ? ? ? 1_555 C STA 6 N ? ? I ALA 5 I STA 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale one ? D ASN 70 ND2 ? ? ? 1_555 H NAG . C1 ? ? C ASN 70 F NAG 1 1_555 ? ? ? ? ? ? ? 1.462 ? N-Glycosylation covale8 covale one ? J NAG . C1 ? ? ? 1_555 E ASN 94 ND2 ? ? D NAG 1 D ASN 199 1_555 ? ? ? ? ? ? ? 1.483 ? N-Glycosylation covale9 covale both ? F IVA 1 C ? ? ? 1_555 F VAL 2 N ? ? J IVA 1 J VAL 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale10 covale both ? F VAL 3 C ? ? ? 1_555 F STA 4 N ? ? J VAL 3 J STA 4 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale11 covale both ? F STA 4 C ? ? ? 1_555 F ALA 5 N ? ? J STA 4 J ALA 5 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale12 covale both ? F ALA 5 C ? ? ? 1_555 F STA 6 N ? ? J ALA 5 J STA 6 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale13 covale both ? G NAG . O4 ? ? ? 1_555 G NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale14 covale both ? G NAG . O4 ? ? ? 1_555 G BMA . C1 ? ? E NAG 2 E BMA 3 1_555 ? ? ? ? ? ? ? 1.407 ? ? covale15 covale both ? G BMA . O6 ? ? ? 1_555 G MAN . C1 ? ? E BMA 3 E MAN 4 1_555 ? ? ? ? ? ? ? 1.458 ? ? covale16 covale both ? H NAG . O4 ? ? ? 1_555 H NAG . C1 ? ? F NAG 1 F NAG 2 1_555 ? ? ? ? ? ? ? 1.463 ? ? covale17 covale both ? H NAG . O4 ? ? ? 1_555 H BMA . C1 ? ? F NAG 2 F BMA 3 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale18 covale both ? H BMA . O6 ? ? ? 1_555 H MAN . C1 ? ? F BMA 3 F MAN 4 1_555 ? ? ? ? ? ? ? 1.417 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 IVA C 1 ? . . . . IVA I 1 ? 1_555 . . . . . . . ? 1 IVA None 'Non-standard residue' 2 STA C 4 ? . . . . STA I 4 ? 1_555 . . . . . . . ? 1 STA None 'Non-standard residue' 3 STA C 6 ? . . . . STA I 6 ? 1_555 . . . . . . . ? 1 STA None 'Non-standard residue' 4 IVA F 1 ? . . . . IVA J 1 ? 1_555 . . . . . . . ? 1 IVA None 'Non-standard residue' 5 STA F 4 ? . . . . STA J 4 ? 1_555 . . . . . . . ? 1 STA None 'Non-standard residue' 6 STA F 6 ? . . . . STA J 6 ? 1_555 . . . . . . . ? 1 STA None 'Non-standard residue' 7 NAG G . ? ASN A 70 ? NAG E 1 ? 1_555 ASN A 70 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 8 NAG H . ? ASN D 70 ? NAG F 1 ? 1_555 ASN C 70 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 9 NAG I . ? ASN B 94 ? NAG B 1 ? 1_555 ASN B 199 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 10 NAG J . ? ASN E 94 ? NAG D 1 ? 1_555 ASN D 199 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 11 CYS A 27 ? CYS A 96 ? CYS A 27 ? 1_555 CYS A 96 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS A 46 ? CYS A 53 ? CYS A 46 ? 1_555 CYS A 53 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS B 117 ? CYS B 121 ? CYS B 222 ? 1_555 CYS B 226 ? 1_555 SG SG . . . None 'Disulfide bridge' 14 CYS B 160 ? CYS B 197 ? CYS B 265 ? 1_555 CYS B 302 ? 1_555 SG SG . . . None 'Disulfide bridge' 15 CYS D 27 ? CYS D 96 ? CYS C 27 ? 1_555 CYS C 96 ? 1_555 SG SG . . . None 'Disulfide bridge' 16 CYS D 46 ? CYS D 53 ? CYS C 46 ? 1_555 CYS C 53 ? 1_555 SG SG . . . None 'Disulfide bridge' 17 CYS E 117 ? CYS E 121 ? CYS D 222 ? 1_555 CYS D 226 ? 1_555 SG SG . . . None 'Disulfide bridge' 18 CYS E 160 ? CYS E 197 ? CYS D 265 ? 1_555 CYS D 302 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 23 A . ? THR 23 A PRO 24 A ? PRO 24 A 1 -3.00 2 VAL 94 A . ? VAL 94 A PRO 95 A ? PRO 95 A 1 -6.94 3 GLN 71 B . ? GLN 176 B PRO 72 B ? PRO 177 B 1 -23.69 4 PRO 208 B . ? PRO 313 B PRO 209 B ? PRO 314 B 1 10.09 5 GLY 211 B . ? GLY 316 B PRO 212 B ? PRO 317 B 1 8.40 6 GLY 1 D . ? GLY 1 C PRO 2 D ? PRO 2 C 1 -1.44 7 THR 23 D . ? THR 23 C PRO 24 D ? PRO 24 C 1 -11.14 8 VAL 94 D . ? VAL 94 C PRO 95 D ? PRO 95 C 1 -17.72 9 GLN 71 E . ? GLN 176 D PRO 72 E ? PRO 177 D 1 -11.29 10 PRO 208 E . ? PRO 313 D PRO 209 E ? PRO 314 D 1 14.65 11 GLY 211 E . ? GLY 316 D PRO 212 E ? PRO 317 D 1 -12.99 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details I1 ? 6 ? II1 ? 4 ? 1A1 ? 9 ? 1B1 ? 9 ? 2A1 ? 7 ? 2B1 ? 7 ? I2 ? 6 ? II2 ? 4 ? 1A2 ? 9 ? 1B2 ? 9 ? 2A2 ? 7 ? 2B2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense I1 1 2 ? anti-parallel I1 2 3 ? anti-parallel I1 3 4 ? anti-parallel I1 4 5 ? anti-parallel I1 5 6 ? anti-parallel II1 1 2 ? anti-parallel II1 2 3 ? anti-parallel II1 3 4 ? anti-parallel 1A1 1 2 ? anti-parallel 1A1 2 3 ? anti-parallel 1A1 3 4 ? parallel 1A1 4 5 ? anti-parallel 1A1 5 6 ? parallel 1A1 6 7 ? anti-parallel 1A1 7 8 ? anti-parallel 1A1 8 9 ? anti-parallel 1B1 1 2 ? anti-parallel 1B1 2 3 ? anti-parallel 1B1 3 4 ? parallel 1B1 4 5 ? anti-parallel 1B1 5 6 ? parallel 1B1 6 7 ? anti-parallel 1B1 7 8 ? anti-parallel 1B1 8 9 ? anti-parallel 2A1 1 2 ? anti-parallel 2A1 2 3 ? anti-parallel 2A1 3 4 ? anti-parallel 2A1 4 5 ? parallel 2A1 5 6 ? anti-parallel 2A1 6 7 ? parallel 2B1 1 2 ? anti-parallel 2B1 2 3 ? anti-parallel 2B1 3 4 ? anti-parallel 2B1 4 5 ? parallel 2B1 5 6 ? anti-parallel 2B1 6 7 ? parallel I2 1 2 ? anti-parallel I2 2 3 ? anti-parallel I2 3 4 ? anti-parallel I2 4 5 ? anti-parallel I2 5 6 ? anti-parallel II2 1 2 ? anti-parallel II2 2 3 ? anti-parallel II2 3 4 ? anti-parallel 1A2 1 2 ? anti-parallel 1A2 2 3 ? anti-parallel 1A2 3 4 ? parallel 1A2 4 5 ? anti-parallel 1A2 5 6 ? parallel 1A2 6 7 ? anti-parallel 1A2 7 8 ? anti-parallel 1A2 8 9 ? anti-parallel 1B2 1 2 ? anti-parallel 1B2 2 3 ? anti-parallel 1B2 3 4 ? parallel 1B2 4 5 ? anti-parallel 1B2 5 6 ? parallel 1B2 6 7 ? anti-parallel 1B2 7 8 ? anti-parallel 1B2 8 9 ? anti-parallel 2A2 1 2 ? anti-parallel 2A2 2 3 ? anti-parallel 2A2 3 4 ? anti-parallel 2A2 4 5 ? parallel 2A2 5 6 ? anti-parallel 2A2 6 7 ? parallel 2B2 1 2 ? anti-parallel 2B2 2 3 ? anti-parallel 2B2 3 4 ? anti-parallel 2B2 4 5 ? parallel 2B2 5 6 ? anti-parallel 2B2 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id I1 1 ILE A 3 ? LEU A 7 ? ILE A 3 LEU A 7 I1 2 GLY B 73 ? GLY B 79 ? GLY B 178 GLY B 184 I1 3 ILE B 59 ? SER B 65 ? ILE B 164 SER B 170 I1 4 TYR B 225 ? ASP B 229 ? TYR B 330 ASP B 334 I1 5 ASN B 232 ? ALA B 241 ? ASN B 337 ALA B 346 I1 6 TYR B 85 ? VAL B 95 ? TYR B 190 VAL B 200 II1 1 VAL B 149 ? LEU B 151 ? VAL B 254 LEU B 256 II1 2 GLU B 155 ? ILE B 158 ? GLU B 260 ILE B 263 II1 3 LEU B 196 ? SER B 199 ? LEU B 301 SER B 304 II1 4 GLN B 191 ? GLY B 193 ? GLN B 296 GLY B 298 1A1 1 VAL A 68 ? TYR A 78 ? VAL A 68 TYR A 78 1A1 2 GLY A 81 ? ASP A 90 ? GLY A 81 ASP A 90 1A1 3 GLN B 8 ? LYS B 15 ? GLN B 113 LYS B 120 1A1 4 ASN A 38 ? SER A 43 ? ASN A 38 SER A 43 1A1 5 PHE B 26 ? MET B 32 ? PHE B 131 MET B 137 1A1 6 GLN A 26 ? ASP A 33 ? GLN A 26 ASP A 33 1A1 7 GLN A 14 ? GLY A 22 ? GLN A 14 GLY A 22 1A1 8 LYS A 8 ? TYR A 10 ? LYS A 8 TYR A 10 1A1 9 VAL B 5 ? ARG B 7 ? VAL B 110 ARG B 112 1B1 1 VAL A 68 ? TYR A 78 ? VAL A 68 TYR A 78 1B1 2 GLY A 81 ? ASP A 90 ? GLY A 81 ASP A 90 1B1 3 GLN B 8 ? LYS B 15 ? GLN B 113 LYS B 120 1B1 4 ASN A 38 ? SER A 43 ? ASN A 38 SER A 43 1B1 5 PHE B 26 ? MET B 32 ? PHE B 131 MET B 137 1B1 6 GLN A 26 ? ASP A 33 ? GLN A 26 ASP A 33 1B1 7 GLN A 14 ? GLY A 22 ? GLN A 14 GLY A 22 1B1 8 THR A 91 ? CYS A 96 ? THR A 91 CYS A 96 1B1 9 VAL B 5 ? ARG B 7 ? VAL B 110 ARG B 112 2A1 1 LYS B 176 ? LEU B 180 ? LYS B 281 LEU B 285 2A1 2 ALA B 168 ? LEU B 173 ? ALA B 273 LEU B 278 2A1 3 TRP B 101 ? ALA B 111 ? TRP B 206 ALA B 216 2A1 4 LEU B 114 ? LEU B 116 ? LEU B 219 LEU B 221 2A1 5 LEU B 114 ? LYS B 118 ? LEU B 219 LYS B 223 2A1 6 THR B 129 ? GLY B 134 ? THR B 234 GLY B 239 2A1 7 GLY B 200 ? MET B 204 ? GLY B 305 MET B 309 2B1 1 LYS B 176 ? LEU B 180 ? LYS B 281 LEU B 285 2B1 2 ALA B 168 ? LEU B 173 ? ALA B 273 LEU B 278 2B1 3 TRP B 101 ? ALA B 111 ? TRP B 206 ALA B 216 2B1 4 CYS B 121 ? ASP B 126 ? CYS B 226 ASP B 231 2B1 5 LEU B 114 ? LYS B 118 ? LEU B 219 LYS B 223 2B1 6 THR B 129 ? GLY B 134 ? THR B 234 GLY B 239 2B1 7 GLY B 200 ? MET B 204 ? GLY B 305 MET B 309 I2 1 ILE D 3 ? LEU D 7 ? ILE C 3 LEU C 7 I2 2 GLY E 73 ? GLY E 79 ? GLY D 178 GLY D 184 I2 3 ILE E 59 ? SER E 65 ? ILE D 164 SER D 170 I2 4 TYR E 225 ? ASP E 229 ? TYR D 330 ASP D 334 I2 5 ASN E 232 ? ALA E 241 ? ASN D 337 ALA D 346 I2 6 TYR E 85 ? VAL E 95 ? TYR D 190 VAL D 200 II2 1 VAL E 149 ? LEU E 151 ? VAL D 254 LEU D 256 II2 2 GLU E 155 ? ILE E 158 ? GLU D 260 ILE D 263 II2 3 LEU E 196 ? SER E 199 ? LEU D 301 SER D 304 II2 4 GLN E 191 ? GLY E 193 ? GLN D 296 GLY D 298 1A2 1 VAL D 68 ? TYR D 78 ? VAL C 68 TYR C 78 1A2 2 GLY D 81 ? ASP D 90 ? GLY C 81 ASP C 90 1A2 3 GLN E 8 ? LYS E 15 ? GLN D 113 LYS D 120 1A2 4 ASN D 38 ? SER D 43 ? ASN C 38 SER C 43 1A2 5 PHE E 26 ? MET E 32 ? PHE D 131 MET D 137 1A2 6 GLN D 26 ? ASP D 33 ? GLN C 26 ASP C 33 1A2 7 GLN D 14 ? GLY D 22 ? GLN C 14 GLY C 22 1A2 8 LYS D 8 ? TYR D 10 ? LYS C 8 TYR C 10 1A2 9 VAL E 5 ? ARG E 7 ? VAL D 110 ARG D 112 1B2 1 VAL D 68 ? TYR D 78 ? VAL C 68 TYR C 78 1B2 2 GLY D 81 ? ASP D 90 ? GLY C 81 ASP C 90 1B2 3 GLN E 8 ? LYS E 15 ? GLN D 113 LYS D 120 1B2 4 ASN D 38 ? SER D 43 ? ASN C 38 SER C 43 1B2 5 PHE E 26 ? MET E 32 ? PHE D 131 MET D 137 1B2 6 GLN D 26 ? ASP D 33 ? GLN C 26 ASP C 33 1B2 7 GLN D 14 ? GLY D 22 ? GLN C 14 GLY C 22 1B2 8 THR D 91 ? CYS D 96 ? THR C 91 CYS C 96 1B2 9 VAL E 5 ? ARG E 7 ? VAL D 110 ARG D 112 2A2 1 LYS E 176 ? LEU E 180 ? LYS D 281 LEU D 285 2A2 2 ALA E 168 ? LEU E 173 ? ALA D 273 LEU D 278 2A2 3 TRP E 101 ? ALA E 111 ? TRP D 206 ALA D 216 2A2 4 LEU E 114 ? LEU E 116 ? LEU D 219 LEU D 221 2A2 5 LEU E 114 ? LYS E 118 ? LEU D 219 LYS D 223 2A2 6 THR E 129 ? GLY E 134 ? THR D 234 GLY D 239 2A2 7 GLY E 200 ? MET E 204 ? GLY D 305 MET D 309 2B2 1 LYS E 176 ? LEU E 180 ? LYS D 281 LEU D 285 2B2 2 ALA E 168 ? LEU E 173 ? ALA D 273 LEU D 278 2B2 3 TRP E 101 ? ALA E 111 ? TRP D 206 ALA D 216 2B2 4 CYS E 121 ? ASP E 126 ? CYS D 226 ASP D 231 2B2 5 LEU E 114 ? LYS E 118 ? LEU D 219 LYS D 223 2B2 6 THR E 129 ? GLY E 134 ? THR D 234 GLY D 239 2B2 7 GLY E 200 ? MET E 204 ? GLY D 305 MET D 309 # _pdbx_entry_details.entry_id 1LYB _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 NE2 A HIS 45 ? ? CD2 A HIS 45 ? ? 1.306 1.373 -0.067 0.011 N 2 1 NE2 A HIS 57 ? ? CD2 A HIS 57 ? ? 1.305 1.373 -0.068 0.011 N 3 1 NE2 A HIS 77 ? ? CD2 A HIS 77 ? ? 1.302 1.373 -0.071 0.011 N 4 1 NE2 B HIS 209 ? ? CD2 B HIS 209 ? ? 1.300 1.373 -0.073 0.011 N 5 1 NE2 C HIS 45 ? ? CD2 C HIS 45 ? ? 1.305 1.373 -0.068 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD1 A TRP 40 ? ? CG A TRP 40 ? ? CD2 A TRP 40 ? ? 112.56 106.30 6.26 0.80 N 2 1 CE2 A TRP 40 ? ? CD2 A TRP 40 ? ? CG A TRP 40 ? ? 101.47 107.30 -5.83 0.80 N 3 1 CD1 A TRP 54 ? ? CG A TRP 54 ? ? CD2 A TRP 54 ? ? 112.32 106.30 6.02 0.80 N 4 1 CB A TYR 67 ? ? CG A TYR 67 ? ? CD2 A TYR 67 ? ? 117.40 121.00 -3.60 0.60 N 5 1 CD1 B TRP 206 ? ? CG B TRP 206 ? ? CD2 B TRP 206 ? ? 111.74 106.30 5.44 0.80 N 6 1 CE2 B TRP 206 ? ? CD2 B TRP 206 ? ? CG B TRP 206 ? ? 102.34 107.30 -4.96 0.80 N 7 1 CD1 B TRP 319 ? ? CG B TRP 319 ? ? CD2 B TRP 319 ? ? 112.52 106.30 6.22 0.80 N 8 1 CE2 B TRP 319 ? ? CD2 B TRP 319 ? ? CG B TRP 319 ? ? 101.31 107.30 -5.99 0.80 N 9 1 CG B TRP 319 ? ? CD2 B TRP 319 ? ? CE3 B TRP 319 ? ? 139.44 133.90 5.54 0.90 N 10 1 NE B ARG 335 ? ? CZ B ARG 335 ? ? NH1 B ARG 335 ? ? 123.59 120.30 3.29 0.50 N 11 1 CD1 C TRP 40 ? ? CG C TRP 40 ? ? CD2 C TRP 40 ? ? 113.30 106.30 7.00 0.80 N 12 1 CB C TRP 40 ? ? CG C TRP 40 ? ? CD1 C TRP 40 ? ? 116.87 127.00 -10.13 1.30 N 13 1 CE2 C TRP 40 ? ? CD2 C TRP 40 ? ? CG C TRP 40 ? ? 100.56 107.30 -6.74 0.80 N 14 1 CG C TRP 40 ? ? CD2 C TRP 40 ? ? CE3 C TRP 40 ? ? 141.62 133.90 7.72 0.90 N 15 1 CB C TYR 59 ? ? CG C TYR 59 ? ? CD2 C TYR 59 ? ? 116.59 121.00 -4.41 0.60 N 16 1 NE D ARG 112 ? ? CZ D ARG 112 ? ? NH1 D ARG 112 ? ? 123.76 120.30 3.46 0.50 N 17 1 NE D ARG 112 ? ? CZ D ARG 112 ? ? NH2 D ARG 112 ? ? 116.59 120.30 -3.71 0.50 N 18 1 CD1 D TRP 206 ? ? CG D TRP 206 ? ? CD2 D TRP 206 ? ? 111.64 106.30 5.34 0.80 N 19 1 CE2 D TRP 206 ? ? CD2 D TRP 206 ? ? CG D TRP 206 ? ? 102.00 107.30 -5.30 0.80 N 20 1 N D LEU 256 ? ? CA D LEU 256 ? ? C D LEU 256 ? ? 91.06 111.00 -19.94 2.70 N 21 1 CD1 D TRP 319 ? ? CG D TRP 319 ? ? CD2 D TRP 319 ? ? 112.57 106.30 6.27 0.80 N 22 1 CE2 D TRP 319 ? ? CD2 D TRP 319 ? ? CG D TRP 319 ? ? 101.48 107.30 -5.82 0.80 N 23 1 NE D ARG 328 ? ? CZ D ARG 328 ? ? NH1 D ARG 328 ? ? 123.57 120.30 3.27 0.50 N 24 1 NE D ARG 339 ? ? CZ D ARG 339 ? ? NH1 D ARG 339 ? ? 123.65 120.30 3.35 0.50 N 25 1 NE D ARG 339 ? ? CZ D ARG 339 ? ? NH2 D ARG 339 ? ? 116.96 120.30 -3.34 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 12 ? ? 57.96 2.17 2 1 ASN A 70 ? ? -141.56 -53.57 3 1 PRO A 95 ? ? -65.65 -165.03 4 1 ASP B 174 ? ? -116.12 58.73 5 1 THR B 201 ? ? -89.23 -74.97 6 1 ALA B 204 ? ? -135.79 -65.16 7 1 GLN B 212 ? ? 179.97 155.91 8 1 CYS B 222 ? ? 39.62 55.87 9 1 LEU B 256 ? ? -106.41 -90.59 10 1 GLN B 258 ? ? 29.08 77.53 11 1 GLN B 296 ? ? -128.41 -73.09 12 1 ALA B 297 ? ? -92.39 -64.68 13 1 LYS B 299 ? ? 61.55 166.56 14 1 THR B 300 ? ? 61.55 -19.05 15 1 VAL I 2 ? ? 82.53 113.63 16 1 THR C 34 ? ? -66.16 0.18 17 1 ASN C 70 ? ? -152.11 -50.55 18 1 PRO C 95 ? ? -76.12 -166.59 19 1 ALA D 204 ? ? -129.77 -71.86 20 1 GLU D 224 ? ? 117.48 -3.38 21 1 LEU D 256 ? ? -113.40 -110.32 22 1 SER D 269 ? ? -52.26 -10.00 23 1 TYR D 290 ? ? -97.95 31.85 24 1 ALA D 297 ? ? 68.87 -77.62 25 1 THR D 300 ? ? -56.91 97.58 26 1 VAL J 2 ? ? 121.03 113.26 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY A 1 ? ? PRO A 2 ? ? -33.56 2 1 STA I 4 ? ? ALA I 5 ? ? -115.61 3 1 PRO D 312 ? ? PRO D 313 ? ? 149.72 4 1 STA J 4 ? ? ALA J 5 ? ? -119.65 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 STA I 4 ? ? 31.75 2 1 STA J 4 ? ? 27.81 # _pdbx_molecule_features.prd_id PRD_000557 _pdbx_molecule_features.name Pepstatin _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class 'Enzyme inhibitor' _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000557 C 2 PRD_000557 F # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 70 A ASN 70 ? ASN 'GLYCOSYLATION SITE' 2 B ASN 94 B ASN 199 ? ASN 'GLYCOSYLATION SITE' 3 D ASN 70 C ASN 70 ? ASN 'GLYCOSYLATION SITE' 4 E ASN 94 D ASN 199 ? ASN 'GLYCOSYLATION SITE' # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THERE ARE SEVERAL BIFURCATED SHEETS IN THIS STRUCTURE. THESE ARE REPRESENTED BY TWO SHEETS WHICH HAVE ONE OR MORE IDENTICAL STRANDS. SHEETS *1A1* AND *1B1* AND SHEETS *1A2* AND *1B2* REPRESENT ONE BIFURCATED SHEET IN EACH MOLECULE. SHEETS *2A1* AND *2B1* AND *2A2* AND *2B2* REPRESENT ONE BIFURCATED SHEET IN EACH MOLECULE. ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 IVA CA C N N 207 IVA CB C N N 208 IVA CG1 C N N 209 IVA CG2 C N N 210 IVA C C N N 211 IVA O O N N 212 IVA OXT O N N 213 IVA HA1 H N N 214 IVA HA2 H N N 215 IVA HB H N N 216 IVA HG11 H N N 217 IVA HG12 H N N 218 IVA HG13 H N N 219 IVA HG21 H N N 220 IVA HG22 H N N 221 IVA HG23 H N N 222 IVA HXT H N N 223 LEU N N N N 224 LEU CA C N S 225 LEU C C N N 226 LEU O O N N 227 LEU CB C N N 228 LEU CG C N N 229 LEU CD1 C N N 230 LEU CD2 C N N 231 LEU OXT O N N 232 LEU H H N N 233 LEU H2 H N N 234 LEU HA H N N 235 LEU HB2 H N N 236 LEU HB3 H N N 237 LEU HG H N N 238 LEU HD11 H N N 239 LEU HD12 H N N 240 LEU HD13 H N N 241 LEU HD21 H N N 242 LEU HD22 H N N 243 LEU HD23 H N N 244 LEU HXT H N N 245 LYS N N N N 246 LYS CA C N S 247 LYS C C N N 248 LYS O O N N 249 LYS CB C N N 250 LYS CG C N N 251 LYS CD C N N 252 LYS CE C N N 253 LYS NZ N N N 254 LYS OXT O N N 255 LYS H H N N 256 LYS H2 H N N 257 LYS HA H N N 258 LYS HB2 H N N 259 LYS HB3 H N N 260 LYS HG2 H N N 261 LYS HG3 H N N 262 LYS HD2 H N N 263 LYS HD3 H N N 264 LYS HE2 H N N 265 LYS HE3 H N N 266 LYS HZ1 H N N 267 LYS HZ2 H N N 268 LYS HZ3 H N N 269 LYS HXT H N N 270 MAN C1 C N S 271 MAN C2 C N S 272 MAN C3 C N S 273 MAN C4 C N S 274 MAN C5 C N R 275 MAN C6 C N N 276 MAN O1 O N N 277 MAN O2 O N N 278 MAN O3 O N N 279 MAN O4 O N N 280 MAN O5 O N N 281 MAN O6 O N N 282 MAN H1 H N N 283 MAN H2 H N N 284 MAN H3 H N N 285 MAN H4 H N N 286 MAN H5 H N N 287 MAN H61 H N N 288 MAN H62 H N N 289 MAN HO1 H N N 290 MAN HO2 H N N 291 MAN HO3 H N N 292 MAN HO4 H N N 293 MAN HO6 H N N 294 MET N N N N 295 MET CA C N S 296 MET C C N N 297 MET O O N N 298 MET CB C N N 299 MET CG C N N 300 MET SD S N N 301 MET CE C N N 302 MET OXT O N N 303 MET H H N N 304 MET H2 H N N 305 MET HA H N N 306 MET HB2 H N N 307 MET HB3 H N N 308 MET HG2 H N N 309 MET HG3 H N N 310 MET HE1 H N N 311 MET HE2 H N N 312 MET HE3 H N N 313 MET HXT H N N 314 NAG C1 C N R 315 NAG C2 C N R 316 NAG C3 C N R 317 NAG C4 C N S 318 NAG C5 C N R 319 NAG C6 C N N 320 NAG C7 C N N 321 NAG C8 C N N 322 NAG N2 N N N 323 NAG O1 O N N 324 NAG O3 O N N 325 NAG O4 O N N 326 NAG O5 O N N 327 NAG O6 O N N 328 NAG O7 O N N 329 NAG H1 H N N 330 NAG H2 H N N 331 NAG H3 H N N 332 NAG H4 H N N 333 NAG H5 H N N 334 NAG H61 H N N 335 NAG H62 H N N 336 NAG H81 H N N 337 NAG H82 H N N 338 NAG H83 H N N 339 NAG HN2 H N N 340 NAG HO1 H N N 341 NAG HO3 H N N 342 NAG HO4 H N N 343 NAG HO6 H N N 344 PHE N N N N 345 PHE CA C N S 346 PHE C C N N 347 PHE O O N N 348 PHE CB C N N 349 PHE CG C Y N 350 PHE CD1 C Y N 351 PHE CD2 C Y N 352 PHE CE1 C Y N 353 PHE CE2 C Y N 354 PHE CZ C Y N 355 PHE OXT O N N 356 PHE H H N N 357 PHE H2 H N N 358 PHE HA H N N 359 PHE HB2 H N N 360 PHE HB3 H N N 361 PHE HD1 H N N 362 PHE HD2 H N N 363 PHE HE1 H N N 364 PHE HE2 H N N 365 PHE HZ H N N 366 PHE HXT H N N 367 PRO N N N N 368 PRO CA C N S 369 PRO C C N N 370 PRO O O N N 371 PRO CB C N N 372 PRO CG C N N 373 PRO CD C N N 374 PRO OXT O N N 375 PRO H H N N 376 PRO HA H N N 377 PRO HB2 H N N 378 PRO HB3 H N N 379 PRO HG2 H N N 380 PRO HG3 H N N 381 PRO HD2 H N N 382 PRO HD3 H N N 383 PRO HXT H N N 384 SER N N N N 385 SER CA C N S 386 SER C C N N 387 SER O O N N 388 SER CB C N N 389 SER OG O N N 390 SER OXT O N N 391 SER H H N N 392 SER H2 H N N 393 SER HA H N N 394 SER HB2 H N N 395 SER HB3 H N N 396 SER HG H N N 397 SER HXT H N N 398 STA N N N N 399 STA CA C N S 400 STA CB C N N 401 STA CG C N N 402 STA CD1 C N N 403 STA CD2 C N N 404 STA CH C N S 405 STA OH O N N 406 STA CM C N N 407 STA C C N N 408 STA O O N N 409 STA OXT O N N 410 STA H H N N 411 STA H2 H N N 412 STA HA H N N 413 STA HB1 H N N 414 STA HB2 H N N 415 STA HG H N N 416 STA HD11 H N N 417 STA HD12 H N N 418 STA HD13 H N N 419 STA HD21 H N N 420 STA HD22 H N N 421 STA HD23 H N N 422 STA HC H N N 423 STA HH H N N 424 STA HM1 H N N 425 STA HM2 H N N 426 STA HXT H N N 427 THR N N N N 428 THR CA C N S 429 THR C C N N 430 THR O O N N 431 THR CB C N R 432 THR OG1 O N N 433 THR CG2 C N N 434 THR OXT O N N 435 THR H H N N 436 THR H2 H N N 437 THR HA H N N 438 THR HB H N N 439 THR HG1 H N N 440 THR HG21 H N N 441 THR HG22 H N N 442 THR HG23 H N N 443 THR HXT H N N 444 TRP N N N N 445 TRP CA C N S 446 TRP C C N N 447 TRP O O N N 448 TRP CB C N N 449 TRP CG C Y N 450 TRP CD1 C Y N 451 TRP CD2 C Y N 452 TRP NE1 N Y N 453 TRP CE2 C Y N 454 TRP CE3 C Y N 455 TRP CZ2 C Y N 456 TRP CZ3 C Y N 457 TRP CH2 C Y N 458 TRP OXT O N N 459 TRP H H N N 460 TRP H2 H N N 461 TRP HA H N N 462 TRP HB2 H N N 463 TRP HB3 H N N 464 TRP HD1 H N N 465 TRP HE1 H N N 466 TRP HE3 H N N 467 TRP HZ2 H N N 468 TRP HZ3 H N N 469 TRP HH2 H N N 470 TRP HXT H N N 471 TYR N N N N 472 TYR CA C N S 473 TYR C C N N 474 TYR O O N N 475 TYR CB C N N 476 TYR CG C Y N 477 TYR CD1 C Y N 478 TYR CD2 C Y N 479 TYR CE1 C Y N 480 TYR CE2 C Y N 481 TYR CZ C Y N 482 TYR OH O N N 483 TYR OXT O N N 484 TYR H H N N 485 TYR H2 H N N 486 TYR HA H N N 487 TYR HB2 H N N 488 TYR HB3 H N N 489 TYR HD1 H N N 490 TYR HD2 H N N 491 TYR HE1 H N N 492 TYR HE2 H N N 493 TYR HH H N N 494 TYR HXT H N N 495 VAL N N N N 496 VAL CA C N S 497 VAL C C N N 498 VAL O O N N 499 VAL CB C N N 500 VAL CG1 C N N 501 VAL CG2 C N N 502 VAL OXT O N N 503 VAL H H N N 504 VAL H2 H N N 505 VAL HA H N N 506 VAL HB H N N 507 VAL HG11 H N N 508 VAL HG12 H N N 509 VAL HG13 H N N 510 VAL HG21 H N N 511 VAL HG22 H N N 512 VAL HG23 H N N 513 VAL HXT H N N 514 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 IVA CA CB sing N N 197 IVA CA C sing N N 198 IVA CA HA1 sing N N 199 IVA CA HA2 sing N N 200 IVA CB CG1 sing N N 201 IVA CB CG2 sing N N 202 IVA CB HB sing N N 203 IVA CG1 HG11 sing N N 204 IVA CG1 HG12 sing N N 205 IVA CG1 HG13 sing N N 206 IVA CG2 HG21 sing N N 207 IVA CG2 HG22 sing N N 208 IVA CG2 HG23 sing N N 209 IVA C O doub N N 210 IVA C OXT sing N N 211 IVA OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MAN C1 C2 sing N N 258 MAN C1 O1 sing N N 259 MAN C1 O5 sing N N 260 MAN C1 H1 sing N N 261 MAN C2 C3 sing N N 262 MAN C2 O2 sing N N 263 MAN C2 H2 sing N N 264 MAN C3 C4 sing N N 265 MAN C3 O3 sing N N 266 MAN C3 H3 sing N N 267 MAN C4 C5 sing N N 268 MAN C4 O4 sing N N 269 MAN C4 H4 sing N N 270 MAN C5 C6 sing N N 271 MAN C5 O5 sing N N 272 MAN C5 H5 sing N N 273 MAN C6 O6 sing N N 274 MAN C6 H61 sing N N 275 MAN C6 H62 sing N N 276 MAN O1 HO1 sing N N 277 MAN O2 HO2 sing N N 278 MAN O3 HO3 sing N N 279 MAN O4 HO4 sing N N 280 MAN O6 HO6 sing N N 281 MET N CA sing N N 282 MET N H sing N N 283 MET N H2 sing N N 284 MET CA C sing N N 285 MET CA CB sing N N 286 MET CA HA sing N N 287 MET C O doub N N 288 MET C OXT sing N N 289 MET CB CG sing N N 290 MET CB HB2 sing N N 291 MET CB HB3 sing N N 292 MET CG SD sing N N 293 MET CG HG2 sing N N 294 MET CG HG3 sing N N 295 MET SD CE sing N N 296 MET CE HE1 sing N N 297 MET CE HE2 sing N N 298 MET CE HE3 sing N N 299 MET OXT HXT sing N N 300 NAG C1 C2 sing N N 301 NAG C1 O1 sing N N 302 NAG C1 O5 sing N N 303 NAG C1 H1 sing N N 304 NAG C2 C3 sing N N 305 NAG C2 N2 sing N N 306 NAG C2 H2 sing N N 307 NAG C3 C4 sing N N 308 NAG C3 O3 sing N N 309 NAG C3 H3 sing N N 310 NAG C4 C5 sing N N 311 NAG C4 O4 sing N N 312 NAG C4 H4 sing N N 313 NAG C5 C6 sing N N 314 NAG C5 O5 sing N N 315 NAG C5 H5 sing N N 316 NAG C6 O6 sing N N 317 NAG C6 H61 sing N N 318 NAG C6 H62 sing N N 319 NAG C7 C8 sing N N 320 NAG C7 N2 sing N N 321 NAG C7 O7 doub N N 322 NAG C8 H81 sing N N 323 NAG C8 H82 sing N N 324 NAG C8 H83 sing N N 325 NAG N2 HN2 sing N N 326 NAG O1 HO1 sing N N 327 NAG O3 HO3 sing N N 328 NAG O4 HO4 sing N N 329 NAG O6 HO6 sing N N 330 PHE N CA sing N N 331 PHE N H sing N N 332 PHE N H2 sing N N 333 PHE CA C sing N N 334 PHE CA CB sing N N 335 PHE CA HA sing N N 336 PHE C O doub N N 337 PHE C OXT sing N N 338 PHE CB CG sing N N 339 PHE CB HB2 sing N N 340 PHE CB HB3 sing N N 341 PHE CG CD1 doub Y N 342 PHE CG CD2 sing Y N 343 PHE CD1 CE1 sing Y N 344 PHE CD1 HD1 sing N N 345 PHE CD2 CE2 doub Y N 346 PHE CD2 HD2 sing N N 347 PHE CE1 CZ doub Y N 348 PHE CE1 HE1 sing N N 349 PHE CE2 CZ sing Y N 350 PHE CE2 HE2 sing N N 351 PHE CZ HZ sing N N 352 PHE OXT HXT sing N N 353 PRO N CA sing N N 354 PRO N CD sing N N 355 PRO N H sing N N 356 PRO CA C sing N N 357 PRO CA CB sing N N 358 PRO CA HA sing N N 359 PRO C O doub N N 360 PRO C OXT sing N N 361 PRO CB CG sing N N 362 PRO CB HB2 sing N N 363 PRO CB HB3 sing N N 364 PRO CG CD sing N N 365 PRO CG HG2 sing N N 366 PRO CG HG3 sing N N 367 PRO CD HD2 sing N N 368 PRO CD HD3 sing N N 369 PRO OXT HXT sing N N 370 SER N CA sing N N 371 SER N H sing N N 372 SER N H2 sing N N 373 SER CA C sing N N 374 SER CA CB sing N N 375 SER CA HA sing N N 376 SER C O doub N N 377 SER C OXT sing N N 378 SER CB OG sing N N 379 SER CB HB2 sing N N 380 SER CB HB3 sing N N 381 SER OG HG sing N N 382 SER OXT HXT sing N N 383 STA N CA sing N N 384 STA N H sing N N 385 STA N H2 sing N N 386 STA CA CB sing N N 387 STA CA CH sing N N 388 STA CA HA sing N N 389 STA CB CG sing N N 390 STA CB HB1 sing N N 391 STA CB HB2 sing N N 392 STA CG CD1 sing N N 393 STA CG CD2 sing N N 394 STA CG HG sing N N 395 STA CD1 HD11 sing N N 396 STA CD1 HD12 sing N N 397 STA CD1 HD13 sing N N 398 STA CD2 HD21 sing N N 399 STA CD2 HD22 sing N N 400 STA CD2 HD23 sing N N 401 STA CH OH sing N N 402 STA CH CM sing N N 403 STA CH HC sing N N 404 STA OH HH sing N N 405 STA CM C sing N N 406 STA CM HM1 sing N N 407 STA CM HM2 sing N N 408 STA C O doub N N 409 STA C OXT sing N N 410 STA OXT HXT sing N N 411 THR N CA sing N N 412 THR N H sing N N 413 THR N H2 sing N N 414 THR CA C sing N N 415 THR CA CB sing N N 416 THR CA HA sing N N 417 THR C O doub N N 418 THR C OXT sing N N 419 THR CB OG1 sing N N 420 THR CB CG2 sing N N 421 THR CB HB sing N N 422 THR OG1 HG1 sing N N 423 THR CG2 HG21 sing N N 424 THR CG2 HG22 sing N N 425 THR CG2 HG23 sing N N 426 THR OXT HXT sing N N 427 TRP N CA sing N N 428 TRP N H sing N N 429 TRP N H2 sing N N 430 TRP CA C sing N N 431 TRP CA CB sing N N 432 TRP CA HA sing N N 433 TRP C O doub N N 434 TRP C OXT sing N N 435 TRP CB CG sing N N 436 TRP CB HB2 sing N N 437 TRP CB HB3 sing N N 438 TRP CG CD1 doub Y N 439 TRP CG CD2 sing Y N 440 TRP CD1 NE1 sing Y N 441 TRP CD1 HD1 sing N N 442 TRP CD2 CE2 doub Y N 443 TRP CD2 CE3 sing Y N 444 TRP NE1 CE2 sing Y N 445 TRP NE1 HE1 sing N N 446 TRP CE2 CZ2 sing Y N 447 TRP CE3 CZ3 doub Y N 448 TRP CE3 HE3 sing N N 449 TRP CZ2 CH2 doub Y N 450 TRP CZ2 HZ2 sing N N 451 TRP CZ3 CH2 sing Y N 452 TRP CZ3 HZ3 sing N N 453 TRP CH2 HH2 sing N N 454 TRP OXT HXT sing N N 455 TYR N CA sing N N 456 TYR N H sing N N 457 TYR N H2 sing N N 458 TYR CA C sing N N 459 TYR CA CB sing N N 460 TYR CA HA sing N N 461 TYR C O doub N N 462 TYR C OXT sing N N 463 TYR CB CG sing N N 464 TYR CB HB2 sing N N 465 TYR CB HB3 sing N N 466 TYR CG CD1 doub Y N 467 TYR CG CD2 sing Y N 468 TYR CD1 CE1 sing Y N 469 TYR CD1 HD1 sing N N 470 TYR CD2 CE2 doub Y N 471 TYR CD2 HD2 sing N N 472 TYR CE1 CZ doub Y N 473 TYR CE1 HE1 sing N N 474 TYR CE2 CZ sing Y N 475 TYR CE2 HE2 sing N N 476 TYR CZ OH sing N N 477 TYR OH HH sing N N 478 TYR OXT HXT sing N N 479 VAL N CA sing N N 480 VAL N H sing N N 481 VAL N H2 sing N N 482 VAL CA C sing N N 483 VAL CA CB sing N N 484 VAL CA HA sing N N 485 VAL C O doub N N 486 VAL C OXT sing N N 487 VAL CB CG1 sing N N 488 VAL CB CG2 sing N N 489 VAL CB HB sing N N 490 VAL CG1 HG11 sing N N 491 VAL CG1 HG12 sing N N 492 VAL CG1 HG13 sing N N 493 VAL CG2 HG21 sing N N 494 VAL CG2 HG22 sing N N 495 VAL CG2 HG23 sing N N 496 VAL OXT HXT sing N N 497 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n 4 MAN 4 n # _atom_sites.entry_id 1LYB _atom_sites.fract_transf_matrix[1][1] 0.007943 _atom_sites.fract_transf_matrix[1][2] 0.004586 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009172 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009606 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'GLY A 1 - PRO A 2 OMEGA =326.44 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION' 2 'CIS PROLINE - PRO A 24' 3 'CIS PROLINE - PRO A 95' 4 'CIS PROLINE - PRO B 177' 5 'CIS PROLINE - PRO B 314' 6 'CIS PROLINE - PRO B 317' 7 'CIS PROLINE - PRO C 2' 8 'CIS PROLINE - PRO C 24' 9 'CIS PROLINE - PRO C 95' 10 'CIS PROLINE - PRO D 177' 11 'PRO D 312 - PRO D 313 OMEGA =149.72 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION' 12 'CIS PROLINE - PRO D 314' 13 'CIS PROLINE - PRO D 317' # loop_ _atom_type.symbol C H N O S # loop_