HEADER HYDROLASE 01-FEB-75 1LYZ TITLE REAL-SPACE REFINEMENT OF THE STRUCTURE OF HEN EGG-WHITE LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEN EGG WHITE LYSOZYME; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS KEYWDS HYDROLASE (O-GLYCOSYL), HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.DIAMOND,D.C.PHILLIPS,C.C.F.BLAKE,A.C.T.NORTH REVDAT 12 29-NOV-17 1LYZ 1 HELIX REVDAT 11 24-FEB-09 1LYZ 1 VERSN REVDAT 10 16-OCT-87 1LYZ 1 FTNOTE TURN REVDAT 9 25-APR-86 1LYZ 3 SOURCE SEQRES ATOM REVDAT 8 07-FEB-84 1LYZ 1 FTNOTE REVDAT 7 30-SEP-83 1LYZ 1 REVDAT REVDAT 6 01-MAR-82 1LYZ 1 REMARK REVDAT 5 20-APR-81 1LYZ 1 SHEET REVDAT 4 31-DEC-80 1LYZ 1 REMARK REVDAT 3 01-NOV-77 1LYZ 1 COMPND SOURCE AUTHOR JRNL REVDAT 3 2 1 REMARK FORMUL SSBOND REVDAT 2 16-MAY-77 1LYZ 3 SEQRES ATOM REVDAT 1 12-APR-77 1LYZ 0 JRNL AUTH R.DIAMOND JRNL TITL REAL-SPACE REFINEMENT OF THE STRUCTURE OF HEN EGG-WHITE JRNL TITL 2 LYSOZYME. JRNL REF J.MOL.BIOL. V. 82 371 1974 JRNL REFN ISSN 0022-2836 JRNL PMID 4856347 JRNL DOI 10.1016/0022-2836(74)90598-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.C.PHILLIPS REMARK 1 TITL CRYSTALLOGRAPHIC STUDIES OF LYSOZYME AND ITS INTERACTIONS REMARK 1 TITL 2 WITH INHIBITORS AND SUBSTRATES REMARK 1 EDIT E.F.OSSERMAN, R.F.CANFIELD, S.BEYCHOK REMARK 1 REF LYSOZYME 9 1974 REMARK 1 PUBL ACADEMIC PRESS,NEW YORK REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH T.IMOTO,L.N.JOHNSON,A.C.T.NORTH,D.C.PHILLIPS,J.A.RUPLEY REMARK 1 TITL VERTEBRATE LYSOZYMES REMARK 1 EDIT P.BOYER REMARK 1 REF THE ENZYMES,THIRD EDITION V. 7 665 1972 REMARK 1 PUBL ACADEMIC PRESS,NEW YORK REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH C.R.BEDDELL,C.C.F.BLAKE,S.J.OATLEY REMARK 1 TITL AN X-RAY STUDY OF THE STRUCTURE AND BINDING PROPERTIES OF REMARK 1 TITL 2 IODINE-INACTIVATED LYSOZYME REMARK 1 REF J.MOL.BIOL. V. 97 643 1975 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.LEVITT REMARK 1 TITL ENERGY REFINEMENT OF HEN EGG-WHITE LYSOZYME REMARK 1 REF J.MOL.BIOL. V. 82 393 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH C.C.F.BLAKE,G.A.MAIR,A.C.T.NORTH,D.C.PHILLIPS,V.R.SARMA REMARK 1 TITL ON THE CONFORMATION OF THE HEN EGG-WHITE LYSOZYME MOLECULE REMARK 1 REF PROC.R.SOC.LONDON,SER.B V. 167 365 1967 REMARK 1 REFN ISSN 0080-4649 REMARK 1 REFERENCE 6 REMARK 1 AUTH C.C.F.BLAKE,L.N.JOHNSON,G.A.MAIR,A.C.T.NORTH,D.C.PHILLIPS, REMARK 1 AUTH 2 V.R.SARMA REMARK 1 TITL CRYSTALLOGRAPHIC STUDIES OF THE ACTIVITY OF HEN EGG-WHITE REMARK 1 TITL 2 LYSOZYME REMARK 1 REF PROC.R.SOC.LONDON,SER.B V. 167 378 1967 REMARK 1 REFN ISSN 0080-4649 REMARK 1 REFERENCE 7 REMARK 1 AUTH D.C.PHILLIPS REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF AN ENZYME MOLECULE REMARK 1 REF SCI.AM. V. 215 78 1966 REMARK 1 REFN ISSN 0036-8733 REMARK 1 REFERENCE 8 REMARK 1 AUTH C.C.F.BLAKE,D.F.KOENIG,G.A.MAIR,A.C.T.NORTH,D.C.PHILLIPS, REMARK 1 AUTH 2 V.R.SARMA REMARK 1 TITL STRUCTURE OF HEN EGG-WHITE LYSOZYME, A THREE-DIMENSIONAL REMARK 1 TITL 2 FOURIER SYNTHESIS AT 2 ANGSTROMS RESOLUTION REMARK 1 REF NATURE V. 206 757 1965 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 9 REMARK 1 AUTH L.N.JOHNSON,D.C.PHILLIPS REMARK 1 TITL STRUCTURE OF SOME CRYSTALLINE LYSOZYME-INHIBITOR COMPLEXES REMARK 1 TITL 2 DETERMINED BY X-RAY ANALYSIS AT 6 ANGSTROMS RESOLUTION REMARK 1 REF NATURE V. 206 761 1965 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 10 REMARK 1 EDIT R.J.FELDMANN REMARK 1 REF ATLAS OF MACROMOLECULAR 492 1976 REMARK 1 REF 2 STRUCTURE ON MICROFICHE REMARK 1 PUBL TRACOR JITCO INC.,ROCKVILLE,MD. REMARK 1 REFN REMARK 1 REFERENCE 11 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 138 1972 REMARK 1 REF 2 AND STRUCTURE (DATA SECTION) REMARK 1 PUBL NATIONAL BIOMEDICAL RESEARCH FOUNDATION, SILVER SPRING,MD. REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE TEMPERATURE FACTOR FIELDS OF THIS REMARK 3 ENTRY CONTAIN ELECTRON COUNTS INSTEAD, IN THE FORM THEY WERE REMARK 3 DEPOSITED. REMARK 4 REMARK 4 1LYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.95000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.55000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.42500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.55000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.47500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.42500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.47500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 218 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA A 122 NH1 ARG A 125 1.36 REMARK 500 NE2 GLN A 121 O HOH A 144 1.39 REMARK 500 OD1 ASP A 101 O HOH A 228 1.58 REMARK 500 O LYS A 97 OD1 ASP A 101 1.60 REMARK 500 O ALA A 10 N ALA A 11 1.66 REMARK 500 OD1 ASP A 119 NH2 ARG A 125 1.67 REMARK 500 O CYS A 30 N ALA A 31 1.76 REMARK 500 CD GLN A 121 O HOH A 144 1.86 REMARK 500 OG SER A 24 O HOH A 153 1.95 REMARK 500 O ASN A 106 NH2 ARG A 112 2.01 REMARK 500 NH1 ARG A 5 O TRP A 123 2.01 REMARK 500 CB ALA A 122 CZ ARG A 125 2.02 REMARK 500 CB ASP A 101 O HOH A 227 2.02 REMARK 500 CA ALA A 122 NE ARG A 125 2.08 REMARK 500 O HOH A 186 O HOH A 187A 2.08 REMARK 500 CD1 TRP A 63 O HOH A 206 2.12 REMARK 500 O HOH A 226 O HOH A 227 2.12 REMARK 500 O HOH A 161 O HOH A 163 2.12 REMARK 500 O HOH A 156 O HOH A 157 2.13 REMARK 500 O HOH A 159 O HOH A 160 2.18 REMARK 500 CA ALA A 122 CZ ARG A 125 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 193 O HOH A 213 6456 0.06 REMARK 500 O HOH A 141 O HOH A 185 8555 0.13 REMARK 500 O HOH A 138A O HOH A 220 4454 0.16 REMARK 500 CD ARG A 128 O HOH A 186 8555 0.89 REMARK 500 NE ARG A 128 O HOH A 186 8555 1.69 REMARK 500 CG2 THR A 47 NE ARG A 128 3555 2.03 REMARK 500 CG2 THR A 47 NH2 ARG A 128 3555 2.19 REMARK 500 CG ARG A 128 O HOH A 186 8555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 1 N LYS A 1 CA -0.139 REMARK 500 LYS A 1 CA LYS A 1 CB 0.485 REMARK 500 LYS A 1 CB LYS A 1 CG -0.575 REMARK 500 LYS A 1 CA LYS A 1 C 0.364 REMARK 500 LYS A 1 C VAL A 2 N 0.300 REMARK 500 VAL A 2 CB VAL A 2 CG1 -0.127 REMARK 500 VAL A 2 C VAL A 2 O -0.119 REMARK 500 VAL A 2 C PHE A 3 N 0.202 REMARK 500 PHE A 3 N PHE A 3 CA -0.169 REMARK 500 PHE A 3 CB PHE A 3 CG -0.587 REMARK 500 PHE A 3 CG PHE A 3 CD2 -0.257 REMARK 500 PHE A 3 CG PHE A 3 CD1 0.466 REMARK 500 PHE A 3 CD1 PHE A 3 CE1 -0.221 REMARK 500 PHE A 3 CZ PHE A 3 CE2 0.338 REMARK 500 PHE A 3 CA PHE A 3 C 0.311 REMARK 500 PHE A 3 C PHE A 3 O -0.385 REMARK 500 PHE A 3 C GLY A 4 N 0.243 REMARK 500 GLY A 4 N GLY A 4 CA -0.124 REMARK 500 GLY A 4 CA GLY A 4 C 0.328 REMARK 500 ARG A 5 N ARG A 5 CA -0.294 REMARK 500 ARG A 5 CA ARG A 5 CB -0.134 REMARK 500 ARG A 5 CG ARG A 5 CD -0.229 REMARK 500 ARG A 5 NE ARG A 5 CZ -0.510 REMARK 500 ARG A 5 CZ ARG A 5 NH2 0.593 REMARK 500 ARG A 5 CA ARG A 5 C -0.298 REMARK 500 ARG A 5 C CYS A 6 N 0.274 REMARK 500 CYS A 6 N CYS A 6 CA 0.222 REMARK 500 CYS A 6 CA CYS A 6 CB -0.255 REMARK 500 CYS A 6 CB CYS A 6 SG 0.144 REMARK 500 CYS A 6 CA CYS A 6 C 0.331 REMARK 500 CYS A 6 C CYS A 6 O -0.229 REMARK 500 CYS A 6 C GLU A 7 N 0.214 REMARK 500 GLU A 7 CA GLU A 7 CB -0.458 REMARK 500 GLU A 7 CB GLU A 7 CG 0.296 REMARK 500 GLU A 7 CD GLU A 7 OE1 0.269 REMARK 500 GLU A 7 CD GLU A 7 OE2 0.094 REMARK 500 GLU A 7 C LEU A 8 N -0.209 REMARK 500 LEU A 8 CB LEU A 8 CG -0.535 REMARK 500 LEU A 8 CG LEU A 8 CD1 0.361 REMARK 500 LEU A 8 CG LEU A 8 CD2 0.292 REMARK 500 LEU A 8 CA LEU A 8 C -0.264 REMARK 500 ALA A 9 N ALA A 9 CA -0.232 REMARK 500 ALA A 9 CA ALA A 9 CB -0.150 REMARK 500 ALA A 9 CA ALA A 9 C -0.319 REMARK 500 ALA A 10 N ALA A 10 CA 0.171 REMARK 500 ALA A 10 CA ALA A 10 CB 0.289 REMARK 500 ALA A 10 C ALA A 11 N -0.598 REMARK 500 MET A 12 C MET A 12 O 0.381 REMARK 500 LYS A 13 N LYS A 13 CA 0.166 REMARK 500 LYS A 13 CA LYS A 13 CB 0.234 REMARK 500 REMARK 500 THIS ENTRY HAS 444 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 1 CB - CA - C ANGL. DEV. = -25.9 DEGREES REMARK 500 LYS A 1 N - CA - CB ANGL. DEV. = 42.6 DEGREES REMARK 500 LYS A 1 CA - CB - CG ANGL. DEV. = 28.1 DEGREES REMARK 500 LYS A 1 CD - CE - NZ ANGL. DEV. = 22.7 DEGREES REMARK 500 LYS A 1 CA - C - O ANGL. DEV. = -15.0 DEGREES REMARK 500 LYS A 1 CA - C - N ANGL. DEV. = 18.4 DEGREES REMARK 500 VAL A 2 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 VAL A 2 N - CA - CB ANGL. DEV. = -29.7 DEGREES REMARK 500 VAL A 2 CA - CB - CG1 ANGL. DEV. = -15.9 DEGREES REMARK 500 VAL A 2 CA - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 PHE A 3 CB - CA - C ANGL. DEV. = 25.9 DEGREES REMARK 500 PHE A 3 CA - CB - CG ANGL. DEV. = 23.5 DEGREES REMARK 500 PHE A 3 CB - CG - CD2 ANGL. DEV. = 24.1 DEGREES REMARK 500 PHE A 3 CB - CG - CD1 ANGL. DEV. = -20.8 DEGREES REMARK 500 PHE A 3 CG - CD2 - CE2 ANGL. DEV. = 13.4 DEGREES REMARK 500 PHE A 3 CD1 - CE1 - CZ ANGL. DEV. = -10.7 DEGREES REMARK 500 PHE A 3 CZ - CE2 - CD2 ANGL. DEV. = -13.3 DEGREES REMARK 500 PHE A 3 CA - C - N ANGL. DEV. = -21.1 DEGREES REMARK 500 PHE A 3 O - C - N ANGL. DEV. = 15.3 DEGREES REMARK 500 GLY A 4 C - N - CA ANGL. DEV. = -14.4 DEGREES REMARK 500 GLY A 4 CA - C - O ANGL. DEV. = -31.2 DEGREES REMARK 500 GLY A 4 O - C - N ANGL. DEV. = 38.7 DEGREES REMARK 500 ARG A 5 CB - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG A 5 CG - CD - NE ANGL. DEV. = 23.6 DEGREES REMARK 500 ARG A 5 NH1 - CZ - NH2 ANGL. DEV. = -36.7 DEGREES REMARK 500 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 22.6 DEGREES REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 5 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 ARG A 5 CA - C - O ANGL. DEV. = 23.7 DEGREES REMARK 500 ARG A 5 O - C - N ANGL. DEV. = -29.0 DEGREES REMARK 500 CYS A 6 CA - CB - SG ANGL. DEV. = -10.8 DEGREES REMARK 500 CYS A 6 CA - C - O ANGL. DEV. = 33.5 DEGREES REMARK 500 CYS A 6 O - C - N ANGL. DEV. = -27.3 DEGREES REMARK 500 GLU A 7 OE1 - CD - OE2 ANGL. DEV. = -37.4 DEGREES REMARK 500 GLU A 7 CG - CD - OE1 ANGL. DEV. = 23.4 DEGREES REMARK 500 GLU A 7 O - C - N ANGL. DEV. = -18.3 DEGREES REMARK 500 LEU A 8 C - N - CA ANGL. DEV. = 32.7 DEGREES REMARK 500 LEU A 8 N - CA - CB ANGL. DEV. = 19.5 DEGREES REMARK 500 LEU A 8 CD1 - CG - CD2 ANGL. DEV. = -20.8 DEGREES REMARK 500 LEU A 8 CB - CG - CD2 ANGL. DEV. = 21.0 DEGREES REMARK 500 ALA A 10 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ALA A 11 N - CA - CB ANGL. DEV. = 16.6 DEGREES REMARK 500 ALA A 11 CA - C - N ANGL. DEV. = -13.4 DEGREES REMARK 500 ALA A 11 O - C - N ANGL. DEV. = 16.2 DEGREES REMARK 500 LYS A 13 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 LYS A 13 N - CA - CB ANGL. DEV. = -23.0 DEGREES REMARK 500 LYS A 13 CA - CB - CG ANGL. DEV. = -20.8 DEGREES REMARK 500 LYS A 13 CD - CE - NZ ANGL. DEV. = -28.0 DEGREES REMARK 500 LYS A 13 N - CA - C ANGL. DEV. = 31.0 DEGREES REMARK 500 LYS A 13 CA - C - N ANGL. DEV. = -26.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 400 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 5 -77.02 -56.42 REMARK 500 CYS A 6 -46.50 -29.81 REMARK 500 LYS A 13 -73.21 -42.04 REMARK 500 ARG A 14 -56.52 -16.22 REMARK 500 ASN A 19 -0.51 59.08 REMARK 500 LEU A 25 -26.71 -36.37 REMARK 500 PHE A 38 -3.98 82.80 REMARK 500 ASN A 46 -142.28 -98.36 REMARK 500 ASP A 48 35.44 -92.64 REMARK 500 SER A 50 105.36 9.91 REMARK 500 GLN A 57 51.88 35.45 REMARK 500 TRP A 62 -41.75 -136.24 REMARK 500 ASP A 66 23.96 -159.98 REMARK 500 CYS A 80 -67.99 -10.62 REMARK 500 ILE A 88 3.00 -57.06 REMARK 500 THR A 89 -73.63 -47.30 REMARK 500 ALA A 90 -78.47 -9.16 REMARK 500 ALA A 107 -14.95 -45.07 REMARK 500 CYS A 115 -36.50 -136.72 REMARK 500 ASP A 119 75.54 -102.08 REMARK 500 ARG A 128 99.14 -68.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 12 LYS A 13 148.32 REMARK 500 LYS A 13 ARG A 14 144.85 REMARK 500 LEU A 17 ASP A 18 -147.18 REMARK 500 TYR A 20 ARG A 21 -149.87 REMARK 500 TYR A 23 SER A 24 139.93 REMARK 500 ALA A 31 ALA A 32 -128.44 REMARK 500 TYR A 53 GLY A 54 146.26 REMARK 500 ILE A 55 LEU A 56 -145.42 REMARK 500 ASP A 66 GLY A 67 134.64 REMARK 500 CYS A 76 ASN A 77 148.07 REMARK 500 SER A 85 SER A 86 -137.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 5 0.09 SIDE CHAIN REMARK 500 GLU A 7 0.15 SIDE CHAIN REMARK 500 TYR A 20 0.11 SIDE CHAIN REMARK 500 ARG A 21 0.18 SIDE CHAIN REMARK 500 PHE A 34 0.07 SIDE CHAIN REMARK 500 GLU A 35 0.07 SIDE CHAIN REMARK 500 PHE A 38 0.09 SIDE CHAIN REMARK 500 ASN A 44 0.10 SIDE CHAIN REMARK 500 TYR A 53 0.08 SIDE CHAIN REMARK 500 ARG A 61 0.12 SIDE CHAIN REMARK 500 ASN A 103 0.08 SIDE CHAIN REMARK 500 ARG A 114 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 1 12.40 REMARK 500 VAL A 2 -11.76 REMARK 500 ARG A 5 15.03 REMARK 500 GLU A 7 -12.76 REMARK 500 MET A 12 -10.79 REMARK 500 ARG A 14 -16.75 REMARK 500 LEU A 17 27.10 REMARK 500 ASP A 18 20.28 REMARK 500 TYR A 20 16.16 REMARK 500 GLY A 22 -10.46 REMARK 500 TYR A 23 -29.62 REMARK 500 SER A 24 15.76 REMARK 500 CYS A 30 -29.88 REMARK 500 ASN A 37 -16.46 REMARK 500 ALA A 42 13.05 REMARK 500 ASN A 46 -31.79 REMARK 500 SER A 50 16.27 REMARK 500 ASP A 52 18.81 REMARK 500 TYR A 53 -18.56 REMARK 500 LEU A 56 -13.41 REMARK 500 SER A 60 -14.12 REMARK 500 ASP A 66 -27.26 REMARK 500 PRO A 70 -15.78 REMARK 500 ARG A 73 16.03 REMARK 500 CYS A 76 -17.06 REMARK 500 SER A 85 26.49 REMARK 500 SER A 86 -11.42 REMARK 500 ASP A 87 15.62 REMARK 500 ASN A 93 -12.63 REMARK 500 ALA A 95 11.64 REMARK 500 LYS A 96 -16.88 REMARK 500 SER A 100 -14.14 REMARK 500 GLN A 121 -10.40 REMARK 500 TRP A 123 19.59 REMARK 500 CYS A 127 12.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 1LYZ A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU FORMUL 2 HOH *101(H2 O) HELIX 1 A ARG A 5 HIS A 15 1 11 HELIX 2 B LEU A 25 GLU A 35 1 11 HELIX 3 C CYS A 80 LEU A 84 5 5 HELIX 4 D THR A 89 LYS A 96 1 8 SHEET 1 S1 2 LYS A 1 PHE A 3 0 SHEET 2 S1 2 PHE A 38 THR A 40 -1 N THR A 40 O LYS A 1 SHEET 1 S2 3 ALA A 42 ASN A 46 0 SHEET 2 S2 3 SER A 50 GLY A 54 -1 N ASN A 46 O SER A 50 SHEET 3 S2 3 GLN A 57 SER A 60 -1 N TYR A 53 O ILE A 58 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.06 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.42 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.34 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.22 CRYST1 79.100 79.100 37.900 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.517067 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.517067 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.583113 0.00000 SCALE1 0.012642 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026385 0.00000