HEADER DE NOVO PROTEIN 11-JUN-02 1M02 TITLE NMR STRUCTURE OF PW2 BOUND TO SDS MICELLES: A TRYPTOPHAN-RICH TITLE 2 ANTICOCIDIAL PEPTIDE SELECTED FROM PHAGE DISPLAY LIBRARIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIS-PRO-LEU-LYS-GLN-TYR-TRP-TRP-ARG-PRO-SER-ILE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PW2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SOLID PHASE SYNTHESIS KEYWDS ANTICOCCIDIAL PEPTIDE, EIMERIA, SDS, MICELLE, ANTIMICROBIAL, PW2, DE KEYWDS 2 NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR L.W.TINOCO,A.DA SILVA JR.,A.LEITE,A.P.VALENTE,F.C.ALMEIDA REVDAT 4 23-FEB-22 1M02 1 REMARK REVDAT 3 24-FEB-09 1M02 1 VERSN REVDAT 2 25-JAN-05 1M02 1 JRNL REVDAT 1 14-AUG-02 1M02 0 JRNL AUTH L.W.TINOCO,A.DA SILVA JR.,A.LEITE,A.P.VALENTE,F.C.ALMEIDA JRNL TITL NMR STRUCTURE OF PW2 BOUND TO SDS MICELLES. A JRNL TITL 2 TRYPTOPHAN-RICH ANTICOCCIDIAL PEPTIDE SELECTED FROM PHAGE JRNL TITL 3 DISPLAY LIBRARIES JRNL REF J.BIOL.CHEM. V. 277 36351 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12130641 JRNL DOI 10.1074/JBC.M204225200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.DA SILVA JR.,U.KAWAZOE,F.F.FREITAS,M.S.GATTI,H.DOLDER, REMARK 1 AUTH 2 R.I.SCHUMACHER,M.A.JULIANO,M.J.DA SILVA,A.LEITE REMARK 1 TITL AVIAN ANTICOCCIDIAL ACTIVITY OF A NOVEL MEMBRANE-INTERACTIVE REMARK 1 TITL 2 PEPTIDE SELECTED FROM PHAGE DISPLAY LIBRARIES REMARK 1 REF MOL.BIOCHEM.PARASITOL. V. 120 53 2002 REMARK 1 REFN ISSN 0166-6851 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO, F. GRZESIEK, S., ZHU, G., VUISTER, G. REMARK 3 W., PFEIFER, J. AND BAX, A. (NMRPIPE), BRUNGER, A. REMARK 3 T., ADAMS, P.D., CLORE, G.M., DELANO, W.L., GROS, REMARK 3 P., GROSSE-KUNSTLEVE, R.W., JIANG, J. S., REMARK 3 KUSZEWSKI, J., NILGES, M., PANNU, N.S., READ, R.J., REMARK 3 RICE, L.M., SIMONSON, T., WARREN, G.L. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CARTESIAN DYNAMICS REMARK 4 REMARK 4 1M02 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016429. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 100 MM SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 4 MM PW2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 400 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 6 88.80 58.62 REMARK 500 1 TRP A 8 -99.74 -132.36 REMARK 500 2 TYR A 6 74.58 60.15 REMARK 500 2 TRP A 8 -95.52 -137.85 REMARK 500 3 PRO A 2 73.58 -69.43 REMARK 500 3 TYR A 6 88.25 63.93 REMARK 500 3 TRP A 7 -176.35 -65.60 REMARK 500 3 TRP A 8 -95.67 -175.88 REMARK 500 4 TRP A 8 -97.16 -149.69 REMARK 500 4 SER A 11 103.82 -164.67 REMARK 500 5 TYR A 6 84.92 60.87 REMARK 500 5 TRP A 8 -94.41 -176.95 REMARK 500 6 LEU A 3 15.78 -141.13 REMARK 500 6 TYR A 6 80.50 61.93 REMARK 500 6 TRP A 8 -94.51 -176.92 REMARK 500 6 SER A 11 96.72 50.78 REMARK 500 7 TYR A 6 83.29 62.21 REMARK 500 7 TRP A 7 -175.59 -68.77 REMARK 500 7 TRP A 8 -93.05 -141.39 REMARK 500 7 SER A 11 87.98 63.01 REMARK 500 8 GLN A 5 -29.08 179.84 REMARK 500 8 TYR A 6 82.90 66.98 REMARK 500 8 TRP A 8 -95.75 -139.29 REMARK 500 8 SER A 11 86.86 -60.48 REMARK 500 9 LYS A 4 -32.03 178.47 REMARK 500 9 TYR A 6 74.96 56.00 REMARK 500 9 TRP A 8 -97.23 -111.14 REMARK 500 9 PRO A 10 -164.44 -57.51 REMARK 500 9 SER A 11 31.16 -164.07 REMARK 500 10 TYR A 6 81.62 62.54 REMARK 500 10 TRP A 8 -95.58 -124.53 REMARK 500 11 TYR A 6 73.63 62.17 REMARK 500 11 TRP A 8 -98.26 -159.48 REMARK 500 11 SER A 11 32.05 -165.65 REMARK 500 12 TRP A 7 -167.13 42.21 REMARK 500 12 TRP A 8 -99.51 -170.43 REMARK 500 12 PRO A 10 -162.28 -70.09 REMARK 500 12 SER A 11 31.92 -164.84 REMARK 500 13 TRP A 7 -170.33 44.20 REMARK 500 13 TRP A 8 -96.70 -143.91 REMARK 500 14 TYR A 6 75.99 60.17 REMARK 500 14 TRP A 8 -96.61 -158.34 REMARK 500 15 TRP A 7 -169.05 43.37 REMARK 500 15 TRP A 8 -95.90 -150.30 REMARK 500 16 PRO A 2 159.99 -47.74 REMARK 500 16 TYR A 6 80.52 54.67 REMARK 500 16 TRP A 8 -97.84 -112.31 REMARK 500 17 TYR A 6 91.84 65.52 REMARK 500 17 TRP A 7 -177.88 -65.80 REMARK 500 17 TRP A 8 -98.12 -171.29 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G89 RELATED DB: PDB REMARK 900 INDOLICIDIN BOUND TO DODECYLPHOSPHOCHOLINE MICELLES REMARK 900 RELATED ID: 1G8C RELATED DB: PDB REMARK 900 INDOLICIDIN BOUND TO SODIUM DODECYL SULFATE MICELLES REMARK 900 RELATED ID: 1HR1 RELATED DB: PDB REMARK 900 INDOLICIDIN PEPTIDE DERIVATIVE WITH P-->A SUBSTITUTION REMARK 900 RELATED ID: 1D6X RELATED DB: PDB REMARK 900 TRITRPTICIN BOUND TO MICELLES-A DISTINCT MEMBRANE-BOUND PEPTIDE FOLD DBREF 1M02 A 1 12 PDB 1M02 1M02 1 12 SEQRES 1 A 12 HIS PRO LEU LYS GLN TYR TRP TRP ARG PRO SER ILE CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1