HEADER METAL BINDING PROTEIN 13-JUN-02 1M0J TITLE SOLUTION STRUCTURE OF THE BETA DOMAIN OF MT_NC COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOTHIONEIN MT_NC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BETA DOMAIN; COMPND 5 SYNONYM: METALLOTHIONEIN A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOTOTHENIA CORIICEPS; SOURCE 3 ORGANISM_COMMON: YELLOWBELLY ROCKCOD; SOURCE 4 ORGANISM_TAXID: 8208; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEM-MT KEYWDS CADMIUM THIOLATE-CLUSTER, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CAPASSO,V.CARGINALE,O.CRESCENZI,D.DI MARO,E.PARISI,R.SPADACCINI, AUTHOR 2 P.A.TEMUSSI REVDAT 3 23-FEB-22 1M0J 1 REMARK LINK REVDAT 2 24-FEB-09 1M0J 1 VERSN REVDAT 1 06-MAY-03 1M0J 0 JRNL AUTH C.CAPASSO,V.CARGINALE,O.CRESCENZI,D.DI MARO,E.PARISI, JRNL AUTH 2 R.SPADACCINI,P.A.TEMUSSI JRNL TITL SOLUTION STRUCTURE OF MT_NC, A NOVEL METALLOTHIONEIN FROM JRNL TITL 2 THE ANTARCTIC FISH NOTOTHENIA CORIICEPS. JRNL REF STRUCTURE V. 11 435 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12679021 JRNL DOI 10.1016/S0969-2126(03)00044-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, DYANA 1.5 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), GUENTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 253 NOES, 12 CD-S BONDS AND 63 DIHEDRAL ANGLE CONSTRAINTS REMARK 4 REMARK 4 1M0J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016446. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM METALLOTHIONEIN; 95% H2O, 5% REMARK 210 D2O; METALLOTHIONEIN, U-113CD; REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; E-COSY; DQF REMARK 210 -COSY; [113CD,1H]COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.0.3, DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 14 -73.74 -64.38 REMARK 500 1 ASN A 19 54.41 -146.69 REMARK 500 1 THR A 25 -41.75 -132.91 REMARK 500 1 SER A 30 45.74 -170.45 REMARK 500 1 CYS A 34 -48.34 -144.28 REMARK 500 2 LYS A 14 -59.22 72.01 REMARK 500 2 SER A 15 -34.68 -38.70 REMARK 500 2 ASN A 19 52.45 -144.20 REMARK 500 2 CYS A 20 33.17 -88.12 REMARK 500 2 ASN A 28 67.63 -117.62 REMARK 500 2 SER A 30 53.29 -167.98 REMARK 500 2 CYS A 34 -49.18 -130.45 REMARK 500 3 LYS A 14 -54.98 85.24 REMARK 500 3 SER A 15 -31.62 -38.14 REMARK 500 3 ASN A 19 52.95 -146.19 REMARK 500 3 SER A 30 68.75 -175.15 REMARK 500 3 CYS A 31 -73.27 -121.11 REMARK 500 3 LYS A 32 137.12 -178.51 REMARK 500 3 SER A 33 9.31 81.09 REMARK 500 4 CYS A 12 -71.20 -67.77 REMARK 500 4 THR A 17 138.15 -178.92 REMARK 500 4 ASN A 19 52.40 -142.50 REMARK 500 4 SER A 23 94.85 -176.37 REMARK 500 4 SER A 30 49.79 -165.43 REMARK 500 4 CYS A 31 -91.75 -89.62 REMARK 500 4 LYS A 32 139.59 -178.99 REMARK 500 5 CYS A 12 -72.47 -70.75 REMARK 500 5 THR A 17 126.38 179.40 REMARK 500 5 SER A 30 34.51 -157.78 REMARK 500 5 CYS A 31 -90.02 -78.10 REMARK 500 6 CYS A 10 141.59 63.25 REMARK 500 6 LYS A 14 -91.91 -73.43 REMARK 500 6 CYS A 20 42.60 -107.53 REMARK 500 6 SER A 30 -27.90 -176.69 REMARK 500 6 CYS A 31 134.54 -35.90 REMARK 500 6 CYS A 34 -63.43 -108.69 REMARK 500 7 CYS A 18 100.03 -47.39 REMARK 500 7 THR A 25 -41.68 -161.47 REMARK 500 7 SER A 30 34.22 -175.04 REMARK 500 7 CYS A 31 -98.79 -68.95 REMARK 500 7 LYS A 32 -30.79 166.33 REMARK 500 7 CYS A 34 -51.62 -133.89 REMARK 500 8 CYS A 10 164.61 56.94 REMARK 500 8 CYS A 12 -75.74 -91.05 REMARK 500 8 LYS A 14 -43.31 -29.03 REMARK 500 8 SER A 15 -31.90 -36.37 REMARK 500 8 THR A 17 137.47 82.96 REMARK 500 8 CYS A 18 154.28 -41.08 REMARK 500 8 ASN A 19 57.01 -147.19 REMARK 500 8 CYS A 20 31.78 -87.12 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 103 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 12 SG 131.0 REMARK 620 3 CYS A 26 SG 106.4 106.9 REMARK 620 4 CYS A 29 SG 105.4 104.6 97.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 101 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 CYS A 18 SG 109.9 REMARK 620 3 CYS A 20 SG 97.6 101.7 REMARK 620 4 CYS A 31 SG 105.4 120.8 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 102 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 CYS A 24 SG 115.9 REMARK 620 3 CYS A 29 SG 100.0 112.7 REMARK 620 4 CYS A 34 SG 110.2 116.2 99.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M0G RELATED DB: PDB REMARK 900 1M0G CONTAINS ALPHA DOMAIN OF THE SAME PROTEIN DBREF 1M0J A 8 35 UNP P62339 MTA_NOTCO 2 29 SEQRES 1 A 28 ASP PRO CYS GLU CYS SER LYS SER GLY THR CYS ASN CYS SEQRES 2 A 28 GLY GLY SER CYS THR CYS THR ASN CYS SER CYS LYS SER SEQRES 3 A 28 CYS LYS HET CD A 101 1 HET CD A 102 1 HET CD A 103 1 HETNAM CD CADMIUM ION FORMUL 2 CD 3(CD 2+) HELIX 1 1 CYS A 10 GLY A 16 1 7 LINK SG CYS A 10 CD CD A 103 1555 1555 2.30 LINK SG CYS A 12 CD CD A 101 1555 1555 2.60 LINK SG CYS A 12 CD CD A 103 1555 1555 2.32 LINK SG CYS A 18 CD CD A 101 1555 1555 2.54 LINK SG CYS A 20 CD CD A 101 1555 1555 2.58 LINK SG CYS A 20 CD CD A 102 1555 1555 2.60 LINK SG CYS A 24 CD CD A 102 1555 1555 2.29 LINK SG CYS A 26 CD CD A 103 1555 1555 2.57 LINK SG CYS A 29 CD CD A 102 1555 1555 2.60 LINK SG CYS A 29 CD CD A 103 1555 1555 2.60 LINK SG CYS A 31 CD CD A 101 1555 1555 2.30 LINK SG CYS A 34 CD CD A 102 1555 1555 2.52 SITE 1 AC1 4 CYS A 12 CYS A 18 CYS A 20 CYS A 31 SITE 1 AC2 4 CYS A 20 CYS A 24 CYS A 29 CYS A 34 SITE 1 AC3 4 CYS A 10 CYS A 12 CYS A 26 CYS A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1