HEADER HYDROLASE 14-JUN-02 1M0V TITLE NMR STRUCTURE OF THE TYPE III SECRETORY DOMAIN OF YERSINIA YOPH TITLE 2 COMPLEXED WITH THE SKAP-HOM PHOSPHO-PEPTIDE N-ACETYL-DEPYDDPF-NH2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-TYROSINE PHOSPHATASE YOPH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO-TERMINAL DOMAIN (RESIDUES 1-129); COMPND 5 SYNONYM: VIRULENCE PROTEIN; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SKAP55 HOMOLOGUE; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: SKAP-HOM PEPTIDE; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. IT IS SOURCE 9 NATURALLY FOUND IN MUS MUSCULUS (MOUSE). KEYWDS HIGH RESOLUTION STRUCTURE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.KHANDELWAL,K.KELIIKULI,C.L.SMITH,M.A.SAPER,E.R.P.ZUIDERWEG REVDAT 4 23-FEB-22 1M0V 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1M0V 1 VERSN REVDAT 2 11-DEC-02 1M0V 1 JRNL REVDAT 1 24-JUL-02 1M0V 0 JRNL AUTH P.KHANDELWAL,K.KELIIKULI,C.L.SMITH,M.A.SAPER,E.R.P.ZUIDERWEG JRNL TITL SOLUTION STRUCTURE AND PHOSPHOPEPTIDE BINDING TO THE JRNL TITL 2 N-TERMINAL DOMAIN OF YERSINIA YOPH: COMPARISON WITH A JRNL TITL 3 CRYSTAL STRUCTURE JRNL REF BIOCHEMISTRY V. 41 11425 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12234185 JRNL DOI 10.1021/BI026333L REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.L.SMITH,P.KHANDELWAL,K.KELIIKULI,E.R.P.ZUIDERWEG,M.A.SAPER REMARK 1 TITL STRUCTURE OF THE TYPE III SECRETION AND SUBSTRATE-BINDING REMARK 1 TITL 2 DOMAIN OF YERSINIA YOPH PHOSPHATASE REMARK 1 REF MOL.MICROBIOL. V. 42 967 2001 REMARK 1 REFN ISSN 0950-382X REMARK 1 DOI 10.1046/J.0950-382X.2001.02711.X REMARK 1 REFERENCE 2 REMARK 1 AUTH P.KHANDELWAL,K.KELIIKULI,C.L.SMITH,M.A.SAPER,E.R.P.ZUIDERWEG REMARK 1 TITL 1H, 15N AND 13C ASSIGNMENTS OF THE N-TERMINAL DOMAIN OF REMARK 1 TITL 2 YERSINIA OUTER PROTEIN H IN ITS APO FORM AND IN COMPLEX WITH REMARK 1 TITL 3 A PHOSPHOTYROSINE PEPTIDE REMARK 1 REF J.BIOMOL.NMR V. 21 69 2001 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1011971202626 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA 1.0 REMARK 3 AUTHORS : NILGES, M. AND O'DONOGHUE, S.I. (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 3472 RESTRAINTS, 3222 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 152 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 98 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS. REMARK 4 REMARK 4 1M0V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016458. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM YOPHNT U-15N,13C REMARK 210 COMPLEXED WITH 0.72 MM UNLABELED REMARK 210 PEPTIDE; 50MM PHOSPHATE BUFFER NA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-RESOLVED_NOESY; 3D_15N REMARK 210 -RESOLVED_NOESY; 3D HCCH; 3D 15N/ REMARK 210 13C FILTERED/EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 360 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 9 REMARK 210 REMARK 210 REMARK: 15N HSQC TITRATIONS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 94 H GLY A 96 1.51 REMARK 500 O SER A 4 H LEU A 8 1.59 REMARK 500 O ARG A 91 H VAL A 99 1.59 REMARK 500 O ASP A 89 O VAL A 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 -163.71 -161.36 REMARK 500 1 GLN A 18 71.44 -170.39 REMARK 500 1 GLU A 19 -38.18 170.30 REMARK 500 1 ASP A 22 82.90 59.97 REMARK 500 1 CYS A 23 -151.90 -133.97 REMARK 500 1 ARG A 28 61.35 161.20 REMARK 500 1 GLU A 36 -72.60 -48.60 REMARK 500 1 THR A 37 -103.43 -86.95 REMARK 500 1 THR A 38 -111.69 164.66 REMARK 500 1 PHE A 39 -164.61 172.54 REMARK 500 1 GLN A 40 37.60 160.34 REMARK 500 1 LEU A 42 135.03 -32.62 REMARK 500 1 THR A 43 36.08 -95.39 REMARK 500 1 SER A 46 -66.01 -101.33 REMARK 500 1 VAL A 63 -74.48 -68.38 REMARK 500 1 ASN A 65 -66.47 159.72 REMARK 500 1 VAL A 66 -127.66 48.11 REMARK 500 1 VAL A 67 -18.83 -174.54 REMARK 500 1 LEU A 68 105.05 32.81 REMARK 500 1 THR A 69 -153.42 -66.12 REMARK 500 1 LYS A 82 -74.49 -48.66 REMARK 500 1 HIS A 83 -80.04 -93.29 REMARK 500 1 ASN A 84 -161.11 -178.36 REMARK 500 1 LEU A 85 87.40 61.91 REMARK 500 1 VAL A 93 -126.01 -164.80 REMARK 500 1 ASN A 95 -56.42 66.22 REMARK 500 1 LEU A 103 -91.38 166.81 REMARK 500 1 SER A 105 157.82 102.53 REMARK 500 1 GLU A 124 -66.65 -96.06 REMARK 500 1 SER A 125 -65.86 -95.72 REMARK 500 1 ARG A 128 105.82 72.08 REMARK 500 1 GLU B 203 -162.62 -65.96 REMARK 500 1 PRO B 207 -163.06 -78.43 REMARK 500 2 ASN A 2 -72.30 -101.92 REMARK 500 2 LEU A 3 -75.23 -164.05 REMARK 500 2 SER A 4 -170.34 171.07 REMARK 500 2 LEU A 5 -63.26 -95.52 REMARK 500 2 GLN A 18 23.90 -140.38 REMARK 500 2 GLU A 19 -69.85 -177.69 REMARK 500 2 CYS A 23 -151.97 -76.28 REMARK 500 2 ARG A 28 54.23 169.77 REMARK 500 2 PHE A 39 -84.87 -68.45 REMARK 500 2 LEU A 42 125.75 3.94 REMARK 500 2 THR A 43 56.98 -91.20 REMARK 500 2 ILE A 44 9.26 49.55 REMARK 500 2 VAL A 63 -82.19 -75.64 REMARK 500 2 ALA A 64 -6.72 72.62 REMARK 500 2 ASN A 65 -61.52 153.46 REMARK 500 2 VAL A 66 -100.96 44.23 REMARK 500 2 VAL A 67 107.87 167.38 REMARK 500 REMARK 500 THIS ENTRY HAS 595 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 B 209 DBREF 1M0V A 1 129 UNP P08538 YOPH_YERPS 1 129 DBREF 1M0V B 202 208 GB 13277602 AAH03711 73 79 SEQADV 1M0V SER A 130 UNP P08538 EXPRESSION TAG SEQADV 1M0V HIS A 131 UNP P08538 EXPRESSION TAG SEQADV 1M0V HIS A 132 UNP P08538 EXPRESSION TAG SEQADV 1M0V HIS A 133 UNP P08538 EXPRESSION TAG SEQADV 1M0V HIS A 134 UNP P08538 EXPRESSION TAG SEQADV 1M0V HIS A 135 UNP P08538 EXPRESSION TAG SEQADV 1M0V HIS A 136 UNP P08538 EXPRESSION TAG SEQADV 1M0V PTR B 204 GB 13277602 TYR 75 MODIFIED RESIDUE SEQRES 1 A 136 MET ASN LEU SER LEU SER ASP LEU HIS ARG GLN VAL SER SEQRES 2 A 136 ARG LEU VAL GLN GLN GLU SER GLY ASP CYS THR GLY LYS SEQRES 3 A 136 LEU ARG GLY ASN VAL ALA ALA ASN LYS GLU THR THR PHE SEQRES 4 A 136 GLN GLY LEU THR ILE ALA SER GLY ALA ARG GLU SER GLU SEQRES 5 A 136 LYS VAL PHE ALA GLN THR VAL LEU SER HIS VAL ALA ASN SEQRES 6 A 136 VAL VAL LEU THR GLN GLU ASP THR ALA LYS LEU LEU GLN SEQRES 7 A 136 SER THR VAL LYS HIS ASN LEU ASN ASN TYR ASP LEU ARG SEQRES 8 A 136 SER VAL GLY ASN GLY ASN SER VAL LEU VAL SER LEU ARG SEQRES 9 A 136 SER ASP GLN MET THR LEU GLN ASP ALA LYS VAL LEU LEU SEQRES 10 A 136 GLU ALA ALA LEU ARG GLN GLU SER GLY ALA ARG GLY SER SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS SEQRES 1 B 9 ACE ASP GLU PTR ASP ASP PRO PHE NH2 MODRES 1M0V PTR B 204 TYR O-PHOSPHOTYROSINE HET ACE B 201 6 HET PTR B 204 24 HET NH2 B 209 3 HETNAM ACE ACETYL GROUP HETNAM PTR O-PHOSPHOTYROSINE HETNAM NH2 AMINO GROUP HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 ACE C2 H4 O FORMUL 2 PTR C9 H12 N O6 P FORMUL 2 NH2 H2 N HELIX 1 1 SER A 4 GLN A 17 1 14 HELIX 2 2 ARG A 49 ALA A 64 1 16 HELIX 3 3 THR A 69 HIS A 83 1 15 HELIX 4 4 THR A 109 GLU A 124 1 16 SHEET 1 A 2 THR A 24 LEU A 27 0 SHEET 2 A 2 VAL A 31 ASN A 34 -1 O ASN A 34 N THR A 24 SHEET 1 B 2 TYR A 88 VAL A 93 0 SHEET 2 B 2 ASN A 97 SER A 102 -1 O VAL A 99 N ARG A 91 LINK C ACE B 201 N ASP B 202 1555 1555 1.33 LINK C GLU B 203 N PTR B 204 1555 1555 1.33 LINK C PTR B 204 N ASP B 205 1555 1555 1.33 LINK C PHE B 208 N NH2 B 209 1555 1555 1.33 SITE 1 AC2 1 PHE B 208 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1