HEADER ELECTRON TRANSPORT 20-JUN-02 1M1R TITLE REDUCED P222 CRYSTAL STRUCTURE OF THE TETRAHEME CYTOCHROME C OF TITLE 2 SHEWANELLA ONEIDENSIS MR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL TETRAHEME CYTOCHROME C; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 STRAIN: STRAIN MR1 KEYWDS REDUCED STRUCTURE, ATOMIC RESOLUTION, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS,T.E.MEYER,A.I.TSAPIN,K.H.NEALSON,M.A.CUSANOVICH,J.J.VAN AUTHOR 2 BEEUMEN REVDAT 6 25-DEC-24 1M1R 1 LINK REVDAT 5 03-MAR-21 1M1R 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 24-FEB-09 1M1R 1 VERSN REVDAT 3 01-APR-03 1M1R 1 JRNL REVDAT 2 11-DEC-02 1M1R 1 JRNL REVDAT 1 14-AUG-02 1M1R 0 JRNL AUTH D.LEYS,T.E.MEYER,A.I.TSAPIN,K.H.NEALSON,M.A.CUSANOVICH, JRNL AUTH 2 J.J.VAN BEEUMEN JRNL TITL CRYSTAL STRUCTURES AT ATOMIC RESOLUTION REVEAL THE NOVEL JRNL TITL 2 CONCEPT OF 'ELECTRON-HARVESTING' AS A ROLE FOR THE SMALL JRNL TITL 3 TETRAHEME CYTOCHROME C JRNL REF J.BIOL.CHEM. V. 277 35703 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12080059 JRNL DOI 10.1074/JBC.M203866200 REMARK 2 REMARK 2 RESOLUTION. 1.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.149 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.149 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2506 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 47386 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 657 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47386 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.020 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1M1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.44100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.11700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.05350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.11700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.44100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.05350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CB CG OD1 OD2 REMARK 470 LYS A 41 CD CE NZ REMARK 470 GLU A 44 CD OE1 OE2 REMARK 470 ASP A 66 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 55 O HOH A 1040 2.12 REMARK 500 O HOH A 1194 O HOH A 1265 2.14 REMARK 500 O HOH A 1077 O HOH A 1211 2.17 REMARK 500 NZ LYS A 72 O HOH A 1292 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 11 O HOH A 1164 3555 2.05 REMARK 500 O SER A 12 O HOH A 1123 2564 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 1 CA ALA A 1 CB 0.230 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 1 N - CA - CB ANGL. DEV. = -10.7 DEGREES REMARK 500 ALA A 1 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 LEU A 5 CB - CG - CD1 ANGL. DEV. = 12.8 DEGREES REMARK 500 PHE A 8 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 GLU A 11 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 GLU A 11 CG - CD - OE1 ANGL. DEV. = 15.8 DEGREES REMARK 500 GLU A 11 CG - CD - OE1 ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = -8.7 DEGREES REMARK 500 VAL A 69 CG1 - CB - CG2 ANGL. DEV. = -10.3 DEGREES REMARK 500 GLN A 71 C - N - CA ANGL. DEV. = -21.4 DEGREES REMARK 500 GLN A 71 CB - CG - CD ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP A 80 CB - CG - OD1 ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 45 -168.67 -101.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1157 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1176 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1206 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1216 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A1245 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A1247 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1249 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1252 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1271 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A1297 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1299 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HEC A 802 NA 91.8 REMARK 620 3 HEC A 802 NB 89.6 90.0 REMARK 620 4 HEC A 802 NC 88.6 179.1 89.3 REMARK 620 5 HEC A 802 ND 89.8 89.5 179.2 91.3 REMARK 620 6 HIS A 39 NE2 178.1 89.9 91.3 89.7 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 19 NE2 REMARK 620 2 HEC A 801 NA 92.1 REMARK 620 3 HEC A 801 NB 90.6 90.4 REMARK 620 4 HEC A 801 NC 86.5 178.6 89.3 REMARK 620 5 HEC A 801 ND 87.7 89.3 178.2 90.9 REMARK 620 6 HIS A 65 NE2 178.8 86.7 89.0 94.6 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 803 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 HEC A 803 NA 93.9 REMARK 620 3 HEC A 803 NB 92.5 90.3 REMARK 620 4 HEC A 803 NC 86.4 179.4 90.2 REMARK 620 5 HEC A 803 ND 88.8 88.9 178.5 90.7 REMARK 620 6 HIS A 62 NE2 174.5 91.4 88.8 88.3 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 804 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 52 NE2 REMARK 620 2 HEC A 804 NA 88.4 REMARK 620 3 HEC A 804 NB 89.8 89.7 REMARK 620 4 HEC A 804 NC 92.4 179.2 90.1 REMARK 620 5 HEC A 804 ND 88.8 90.1 178.6 90.1 REMARK 620 6 HIS A 79 NE2 178.9 90.5 90.5 88.7 90.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M1P RELATED DB: PDB REMARK 900 OXIDIZED P21 FORM REMARK 900 RELATED ID: 1M1Q RELATED DB: PDB REMARK 900 OXIDIZED P222 FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN IS DERIVED REMARK 999 FROM BOTH N-TERMINAL SEQUENCING AND FROM REMARK 999 THE SEQUENCED GENOME OF SHEWANELLA ONEIDENSIS REMARK 999 STRAIN MR1. THE PROTEIN SEQUENCE REMARK 999 IS, AT PRESENT, NOT AVAILABLE IN ANY PROTEIN REMARK 999 SEQUENCE DATABASE. DBREF 1M1R A 1 91 UNP Q8EDL6 Q8EDL6_SHEON 26 116 SEQRES 1 A 91 ALA ASP GLN LYS LEU SER ASP PHE HIS ALA GLU SER GLY SEQRES 2 A 91 GLY CYS GLU SER CYS HIS LYS ASP GLY THR PRO SER ALA SEQRES 3 A 91 ASP GLY ALA PHE GLU PHE ALA GLN CYS GLN SER CYS HIS SEQRES 4 A 91 GLY LYS LEU SER GLU MET ASP ALA VAL HIS LYS PRO HIS SEQRES 5 A 91 ASP GLY ASN LEU VAL CYS ALA ASP CYS HIS ALA VAL HIS SEQRES 6 A 91 ASP MET ASN VAL GLY GLN LYS PRO THR CYS GLU SER CYS SEQRES 7 A 91 HIS ASP ASP GLY ARG THR SER ALA SER VAL LEU LYS LYS HET SO4 A 117 5 HET SO4 A 118 5 HET HEC A 801 53 HET HEC A 804 43 HET HEC A 802 47 HET HEC A 803 43 HETNAM SO4 SULFATE ION HETNAM HEC HEME C FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HEC 4(C34 H34 FE N4 O4) FORMUL 8 HOH *303(H2 O) HELIX 1 1 LYS A 4 GLU A 11 1 8 HELIX 2 2 SER A 12 GLY A 13 5 2 HELIX 3 3 GLY A 14 CYS A 18 5 5 HELIX 4 4 HIS A 19 THR A 23 5 5 HELIX 5 5 GLY A 28 GLY A 40 1 13 HELIX 6 6 LYS A 41 MET A 45 5 5 HELIX 7 7 HIS A 49 ASP A 53 5 5 HELIX 8 8 VAL A 57 CYS A 61 5 5 HELIX 9 9 THR A 84 LYS A 90 1 7 LINK SG CYS A 15 CAB HEC A 801 1555 1555 1.81 LINK SG CYS A 18 CAC HEC A 801 1555 1555 1.82 LINK SG CYS A 35 CAB HEC A 802 1555 1555 1.86 LINK SG CYS A 38 CAC HEC A 802 1555 1555 1.86 LINK SG CYS A 58 CAB HEC A 803 1555 1555 1.84 LINK SG CYS A 61 CAC HEC A 803 1555 1555 1.86 LINK SG CYS A 75 CAB HEC A 804 1555 1555 1.86 LINK SG CYS A 78 CAC HEC A 804 1555 1555 1.83 LINK NE2 HIS A 9 FE HEC A 802 1555 1555 2.00 LINK NE2 HIS A 19 FE HEC A 801 1555 1555 1.97 LINK NE2 HIS A 39 FE HEC A 802 1555 1555 1.97 LINK NE2 HIS A 49 FE HEC A 803 1555 1555 2.01 LINK NE2 HIS A 52 FE HEC A 804 1555 1555 2.01 LINK NE2 HIS A 62 FE HEC A 803 1555 1555 1.98 LINK NE2 HIS A 65 FE HEC A 801 1555 1555 1.98 LINK NE2 HIS A 79 FE HEC A 804 1555 1555 1.99 SITE 1 AC1 11 SER A 25 ALA A 26 ASP A 27 ALA A 86 SITE 2 AC1 11 HOH A1046 HOH A1071 HOH A1094 HOH A1103 SITE 3 AC1 11 HOH A1120 HOH A1131 HOH A1204 SITE 1 AC2 12 GLU A 11 SER A 12 LYS A 50 HIS A 79 SITE 2 AC2 12 ASP A 80 ASP A 81 ARG A 83 HOH A1035 SITE 3 AC2 12 HOH A1036 HOH A1135 HOH A1136 HOH A1199 SITE 1 AC3 26 SER A 6 HIS A 9 CYS A 15 SER A 17 SITE 2 AC3 26 CYS A 18 HIS A 19 PRO A 24 SER A 25 SITE 3 AC3 26 GLY A 28 ALA A 29 PHE A 30 GLU A 31 SITE 4 AC3 26 GLN A 34 ALA A 63 VAL A 64 HIS A 65 SITE 5 AC3 26 LYS A 90 HEC A 802 HOH A1039 HOH A1055 SITE 6 AC3 26 HOH A1059 HOH A1113 HOH A1122 HOH A1177 SITE 7 AC3 26 HOH A1179 HOH A1184 SITE 1 AC4 17 GLN A 3 PHE A 8 GLU A 11 PRO A 51 SITE 2 AC4 17 HIS A 52 LEU A 56 CYS A 75 SER A 77 SITE 3 AC4 17 CYS A 78 HIS A 79 ARG A 83 THR A 84 SITE 4 AC4 17 HEC A 803 HOH A1112 HOH A1136 HOH A1161 SITE 5 AC4 17 HOH A1164 SITE 1 AC5 20 LEU A 5 HIS A 9 SER A 17 GLN A 34 SITE 2 AC5 20 CYS A 35 CYS A 38 HIS A 39 CYS A 58 SITE 3 AC5 20 HIS A 62 VAL A 69 LYS A 72 SER A 77 SITE 4 AC5 20 LYS A 91 HEC A 801 HEC A 803 HOH A1037 SITE 5 AC5 20 HOH A1061 HOH A1087 HOH A1153 HOH A1240 SITE 1 AC6 19 HIS A 39 LEU A 42 ASP A 46 VAL A 48 SITE 2 AC6 19 HIS A 49 HIS A 52 CYS A 58 CYS A 61 SITE 3 AC6 19 HIS A 62 LYS A 72 PRO A 73 SER A 85 SITE 4 AC6 19 HEC A 802 HEC A 804 HOH A1038 HOH A1251 SITE 5 AC6 19 HOH A1263 HOH A1264 HOH A1286 CRYST1 32.882 48.107 58.234 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017172 0.00000