HEADER HYDROLASE 20-JUN-02 1M1Z TITLE BETA-LACTAM SYNTHETASE APO ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAM SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CLAVULIGERUS; SOURCE 3 ORGANISM_TAXID: 1901; SOURCE 4 GENE: TAXON:1901; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A(+) KEYWDS CLAVULANIC ACID, ASPARAGINE SYNTHETASE, BETA-LACTAM SYNTHETASE, KEYWDS 2 CARBOXYETHYL ARGININE, DEOXYGUANIDINOPROCLAVAMINIC ACID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.MILLER,B.O.BACHMANN,C.A.TOWNSEND,A.C.ROSENZWEIG REVDAT 4 14-FEB-24 1M1Z 1 REMARK REVDAT 3 24-FEB-09 1M1Z 1 VERSN REVDAT 2 27-NOV-02 1M1Z 1 JRNL REVDAT 1 23-OCT-02 1M1Z 0 JRNL AUTH M.T.MILLER,B.O.BACHMANN,C.A.TOWNSEND,A.C.ROSENZWEIG JRNL TITL THE CATALYTIC CYCLE OF BETA -LACTAM SYNTHETASE OBSERVED BY JRNL TITL 2 X-RAY CRYSTALLOGRAPHIC SNAPSHOTS JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 14752 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12409610 JRNL DOI 10.1073/PNAS.232361199 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 63190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5821 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9176 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 909 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 603 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59000 REMARK 3 B22 (A**2) : 5.47000 REMARK 3 B33 (A**2) : -3.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.380 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.860 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 50.57 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 18.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CHLORIDE, TRIS, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.73450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 21 REMARK 465 ARG A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 165 REMARK 465 ASP A 166 REMARK 465 PRO A 167 REMARK 465 LYS A 168 REMARK 465 GLY A 169 REMARK 465 LEU A 444 REMARK 465 GLY A 445 REMARK 465 VAL A 446 REMARK 465 HIS A 447 REMARK 465 GLU A 448 REMARK 465 GLY A 449 REMARK 465 SER A 450 REMARK 465 GLY A 451 REMARK 465 THR A 452 REMARK 465 THR A 453 REMARK 465 ASP A 468 REMARK 465 ARG A 469 REMARK 465 VAL A 470 REMARK 465 HIS A 471 REMARK 465 GLU A 472 REMARK 465 ARG A 507 REMARK 465 THR A 508 REMARK 465 ALA A 509 REMARK 465 ARG A 510 REMARK 465 GLY A 511 REMARK 465 ALA A 512 REMARK 465 ALA A 513 REMARK 465 MET B 1 REMARK 465 GLY B 21 REMARK 465 ARG B 22 REMARK 465 ALA B 23 REMARK 465 ARG B 359 REMARK 465 GLU B 360 REMARK 465 ASP B 361 REMARK 465 ARG B 362 REMARK 465 PRO B 442 REMARK 465 LYS B 443 REMARK 465 LEU B 444 REMARK 465 GLY B 445 REMARK 465 VAL B 446 REMARK 465 HIS B 447 REMARK 465 GLU B 448 REMARK 465 GLY B 449 REMARK 465 SER B 450 REMARK 465 GLY B 451 REMARK 465 ALA B 509 REMARK 465 ARG B 510 REMARK 465 GLY B 511 REMARK 465 ALA B 512 REMARK 465 ALA B 513 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 92 C PRO B 93 N 0.124 REMARK 500 PRO B 93 CD PRO B 93 N 0.189 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 454 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 SER A 455 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 ALA B 91 CA - C - O ANGL. DEV. = -13.2 DEGREES REMARK 500 ALA B 91 CA - C - N ANGL. DEV. = 15.6 DEGREES REMARK 500 GLY B 92 C - N - CA ANGL. DEV. = 35.7 DEGREES REMARK 500 GLY B 92 CA - C - N ANGL. DEV. = 28.9 DEGREES REMARK 500 GLY B 92 O - C - N ANGL. DEV. = -29.1 DEGREES REMARK 500 PRO B 93 C - N - CD ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO B 93 CA - N - CD ANGL. DEV. = -19.2 DEGREES REMARK 500 PRO B 93 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP B 174 OD1 - CG - OD2 ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP B 174 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 47.51 -99.50 REMARK 500 ALA A 48 148.10 -170.49 REMARK 500 ALA A 69 171.87 177.18 REMARK 500 ALA A 91 -143.50 56.77 REMARK 500 PRO A 93 104.23 -53.59 REMARK 500 ASP A 110 -144.63 59.11 REMARK 500 ASP A 174 -5.13 76.25 REMARK 500 PRO A 240 -70.01 -29.48 REMARK 500 SER A 249 -169.96 -119.18 REMARK 500 ASP A 253 -71.11 -53.62 REMARK 500 HIS A 463 -51.02 -142.63 REMARK 500 VAL A 504 59.54 -95.64 REMARK 500 ARG B 17 -155.32 -165.59 REMARK 500 THR B 18 81.25 -157.50 REMARK 500 SER B 55 -2.00 78.67 REMARK 500 PRO B 58 21.42 -78.05 REMARK 500 PRO B 70 59.83 -67.40 REMARK 500 ASN B 81 54.54 -91.31 REMARK 500 PRO B 90 162.99 -48.62 REMARK 500 ASP B 110 -146.66 59.73 REMARK 500 ASP B 166 81.65 57.71 REMARK 500 ASP B 174 17.94 54.90 REMARK 500 SER B 249 -165.60 -116.18 REMARK 500 LYS B 423 51.86 35.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP B 174 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 454 19.35 REMARK 500 ALA B 91 12.45 REMARK 500 THR B 452 21.75 REMARK 500 THR B 453 11.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JGT RELATED DB: PDB REMARK 900 BETA-LACTAM SYNTHETASE COMPLEXED WITH SUBSTRATE AND ATP ANALOG DBREF 1M1Z A 1 513 UNP Q9R8E3 BLS_STRCL 1 513 DBREF 1M1Z B 1 513 UNP Q9R8E3 BLS_STRCL 1 513 SEQRES 1 A 513 MET GLY ALA PRO VAL LEU PRO ALA ALA PHE GLY PHE LEU SEQRES 2 A 513 ALA SER ALA ARG THR GLY GLY GLY ARG ALA PRO GLY PRO SEQRES 3 A 513 VAL PHE ALA THR ARG GLY SER HIS THR ASP ILE ASP THR SEQRES 4 A 513 PRO GLN GLY GLU ARG SER LEU ALA ALA THR LEU VAL HIS SEQRES 5 A 513 ALA PRO SER VAL ALA PRO ASP ARG ALA VAL ALA ARG SER SEQRES 6 A 513 LEU THR GLY ALA PRO THR THR ALA VAL LEU ALA GLY GLU SEQRES 7 A 513 ILE TYR ASN ARG ASP GLU LEU LEU SER VAL LEU PRO ALA SEQRES 8 A 513 GLY PRO ALA PRO GLU GLY ASP ALA GLU LEU VAL LEU ARG SEQRES 9 A 513 LEU LEU GLU ARG TYR ASP LEU HIS ALA PHE ARG LEU VAL SEQRES 10 A 513 ASN GLY ARG PHE ALA THR VAL VAL ARG THR GLY ASP ARG SEQRES 11 A 513 VAL LEU LEU ALA THR ASP HIS ALA GLY SER VAL PRO LEU SEQRES 12 A 513 TYR THR CYS VAL ALA PRO GLY GLU VAL ARG ALA SER THR SEQRES 13 A 513 GLU ALA LYS ALA LEU ALA ALA HIS ARG ASP PRO LYS GLY SEQRES 14 A 513 PHE PRO LEU ALA ASP ALA ARG ARG VAL ALA GLY LEU THR SEQRES 15 A 513 GLY VAL TYR GLN VAL PRO ALA GLY ALA VAL MET ASP ILE SEQRES 16 A 513 ASP LEU GLY SER GLY THR ALA VAL THR HIS ARG THR TRP SEQRES 17 A 513 THR PRO GLY LEU SER ARG ARG ILE LEU PRO GLU GLY GLU SEQRES 18 A 513 ALA VAL ALA ALA VAL ARG ALA ALA LEU GLU LYS ALA VAL SEQRES 19 A 513 ALA GLN ARG VAL THR PRO GLY ASP THR PRO LEU VAL VAL SEQRES 20 A 513 LEU SER GLY GLY ILE ASP SER SER GLY VAL ALA ALA CYS SEQRES 21 A 513 ALA HIS ARG ALA ALA GLY GLU LEU ASP THR VAL SER MET SEQRES 22 A 513 GLY THR ASP THR SER ASN GLU PHE ARG GLU ALA ARG ALA SEQRES 23 A 513 VAL VAL ASP HIS LEU ARG THR ARG HIS ARG GLU ILE THR SEQRES 24 A 513 ILE PRO THR THR GLU LEU LEU ALA GLN LEU PRO TYR ALA SEQRES 25 A 513 VAL TRP ALA SER GLU SER VAL ASP PRO ASP ILE ILE GLU SEQRES 26 A 513 TYR LEU LEU PRO LEU THR ALA LEU TYR ARG ALA LEU ASP SEQRES 27 A 513 GLY PRO GLU ARG ARG ILE LEU THR GLY TYR GLY ALA ASP SEQRES 28 A 513 ILE PRO LEU GLY GLY MET HIS ARG GLU ASP ARG LEU PRO SEQRES 29 A 513 ALA LEU ASP THR VAL LEU ALA HIS ASP MET ALA THR PHE SEQRES 30 A 513 ASP GLY LEU ASN GLU MET SER PRO VAL LEU SER THR LEU SEQRES 31 A 513 ALA GLY HIS TRP THR THR HIS PRO TYR TRP ASP ARG GLU SEQRES 32 A 513 VAL LEU ASP LEU LEU VAL SER LEU GLU ALA GLY LEU LYS SEQRES 33 A 513 ARG ARG HIS GLY ARG ASP LYS TRP VAL LEU ARG ALA ALA SEQRES 34 A 513 MET ALA ASP ALA LEU PRO ALA GLU THR VAL ASN ARG PRO SEQRES 35 A 513 LYS LEU GLY VAL HIS GLU GLY SER GLY THR THR SER SER SEQRES 36 A 513 PHE SER ARG LEU LEU LEU ASP HIS GLY VAL ALA GLU ASP SEQRES 37 A 513 ARG VAL HIS GLU ALA LYS ARG GLN VAL VAL ARG GLU LEU SEQRES 38 A 513 PHE ASP LEU THR VAL GLY GLY GLY ARG HIS PRO SER GLU SEQRES 39 A 513 VAL ASP THR ASP ASP VAL VAL ARG SER VAL ALA ASP ARG SEQRES 40 A 513 THR ALA ARG GLY ALA ALA SEQRES 1 B 513 MET GLY ALA PRO VAL LEU PRO ALA ALA PHE GLY PHE LEU SEQRES 2 B 513 ALA SER ALA ARG THR GLY GLY GLY ARG ALA PRO GLY PRO SEQRES 3 B 513 VAL PHE ALA THR ARG GLY SER HIS THR ASP ILE ASP THR SEQRES 4 B 513 PRO GLN GLY GLU ARG SER LEU ALA ALA THR LEU VAL HIS SEQRES 5 B 513 ALA PRO SER VAL ALA PRO ASP ARG ALA VAL ALA ARG SER SEQRES 6 B 513 LEU THR GLY ALA PRO THR THR ALA VAL LEU ALA GLY GLU SEQRES 7 B 513 ILE TYR ASN ARG ASP GLU LEU LEU SER VAL LEU PRO ALA SEQRES 8 B 513 GLY PRO ALA PRO GLU GLY ASP ALA GLU LEU VAL LEU ARG SEQRES 9 B 513 LEU LEU GLU ARG TYR ASP LEU HIS ALA PHE ARG LEU VAL SEQRES 10 B 513 ASN GLY ARG PHE ALA THR VAL VAL ARG THR GLY ASP ARG SEQRES 11 B 513 VAL LEU LEU ALA THR ASP HIS ALA GLY SER VAL PRO LEU SEQRES 12 B 513 TYR THR CYS VAL ALA PRO GLY GLU VAL ARG ALA SER THR SEQRES 13 B 513 GLU ALA LYS ALA LEU ALA ALA HIS ARG ASP PRO LYS GLY SEQRES 14 B 513 PHE PRO LEU ALA ASP ALA ARG ARG VAL ALA GLY LEU THR SEQRES 15 B 513 GLY VAL TYR GLN VAL PRO ALA GLY ALA VAL MET ASP ILE SEQRES 16 B 513 ASP LEU GLY SER GLY THR ALA VAL THR HIS ARG THR TRP SEQRES 17 B 513 THR PRO GLY LEU SER ARG ARG ILE LEU PRO GLU GLY GLU SEQRES 18 B 513 ALA VAL ALA ALA VAL ARG ALA ALA LEU GLU LYS ALA VAL SEQRES 19 B 513 ALA GLN ARG VAL THR PRO GLY ASP THR PRO LEU VAL VAL SEQRES 20 B 513 LEU SER GLY GLY ILE ASP SER SER GLY VAL ALA ALA CYS SEQRES 21 B 513 ALA HIS ARG ALA ALA GLY GLU LEU ASP THR VAL SER MET SEQRES 22 B 513 GLY THR ASP THR SER ASN GLU PHE ARG GLU ALA ARG ALA SEQRES 23 B 513 VAL VAL ASP HIS LEU ARG THR ARG HIS ARG GLU ILE THR SEQRES 24 B 513 ILE PRO THR THR GLU LEU LEU ALA GLN LEU PRO TYR ALA SEQRES 25 B 513 VAL TRP ALA SER GLU SER VAL ASP PRO ASP ILE ILE GLU SEQRES 26 B 513 TYR LEU LEU PRO LEU THR ALA LEU TYR ARG ALA LEU ASP SEQRES 27 B 513 GLY PRO GLU ARG ARG ILE LEU THR GLY TYR GLY ALA ASP SEQRES 28 B 513 ILE PRO LEU GLY GLY MET HIS ARG GLU ASP ARG LEU PRO SEQRES 29 B 513 ALA LEU ASP THR VAL LEU ALA HIS ASP MET ALA THR PHE SEQRES 30 B 513 ASP GLY LEU ASN GLU MET SER PRO VAL LEU SER THR LEU SEQRES 31 B 513 ALA GLY HIS TRP THR THR HIS PRO TYR TRP ASP ARG GLU SEQRES 32 B 513 VAL LEU ASP LEU LEU VAL SER LEU GLU ALA GLY LEU LYS SEQRES 33 B 513 ARG ARG HIS GLY ARG ASP LYS TRP VAL LEU ARG ALA ALA SEQRES 34 B 513 MET ALA ASP ALA LEU PRO ALA GLU THR VAL ASN ARG PRO SEQRES 35 B 513 LYS LEU GLY VAL HIS GLU GLY SER GLY THR THR SER SER SEQRES 36 B 513 PHE SER ARG LEU LEU LEU ASP HIS GLY VAL ALA GLU ASP SEQRES 37 B 513 ARG VAL HIS GLU ALA LYS ARG GLN VAL VAL ARG GLU LEU SEQRES 38 B 513 PHE ASP LEU THR VAL GLY GLY GLY ARG HIS PRO SER GLU SEQRES 39 B 513 VAL ASP THR ASP ASP VAL VAL ARG SER VAL ALA ASP ARG SEQRES 40 B 513 THR ALA ARG GLY ALA ALA FORMUL 3 HOH *603(H2 O) HELIX 1 1 GLN A 41 SER A 45 5 5 HELIX 2 2 ALA A 57 ARG A 60 5 4 HELIX 3 3 ASN A 81 SER A 87 1 7 HELIX 4 4 GLY A 97 ASP A 110 1 14 HELIX 5 5 LEU A 111 LEU A 116 5 6 HELIX 6 6 ALA A 158 ALA A 163 1 6 HELIX 7 7 PRO A 218 VAL A 238 1 21 HELIX 8 8 GLY A 251 GLY A 266 1 16 HELIX 9 9 GLU A 280 ARG A 292 1 13 HELIX 10 10 PRO A 301 ALA A 307 1 7 HELIX 11 11 GLN A 308 GLU A 317 1 10 HELIX 12 12 ASP A 320 LEU A 337 1 18 HELIX 13 13 ALA A 350 GLY A 355 1 6 HELIX 14 14 ARG A 362 ALA A 375 1 14 HELIX 15 15 PRO A 385 LEU A 390 1 6 HELIX 16 16 HIS A 397 TRP A 400 5 4 HELIX 17 17 ASP A 401 LEU A 411 1 11 HELIX 18 18 GLU A 412 LYS A 416 5 5 HELIX 19 19 LYS A 423 ALA A 431 1 9 HELIX 20 20 ASP A 432 LEU A 434 5 3 HELIX 21 21 PRO A 435 ARG A 441 1 7 HELIX 22 22 SER A 454 ASP A 462 1 9 HELIX 23 23 ALA A 473 VAL A 486 1 14 HELIX 24 24 HIS A 491 VAL A 495 5 5 HELIX 25 25 ASP A 496 VAL A 504 1 9 HELIX 26 26 GLN B 41 SER B 45 5 5 HELIX 27 27 PRO B 58 ARG B 60 5 3 HELIX 28 28 ASN B 81 SER B 87 1 7 HELIX 29 29 GLY B 97 ASP B 110 1 14 HELIX 30 30 LEU B 111 LEU B 116 5 6 HELIX 31 31 GLU B 157 ALA B 163 1 7 HELIX 32 32 PRO B 218 ARG B 237 1 20 HELIX 33 33 GLY B 251 GLY B 266 1 16 HELIX 34 34 GLU B 280 ARG B 292 1 13 HELIX 35 35 PRO B 301 ALA B 307 1 7 HELIX 36 36 GLN B 308 GLU B 317 1 10 HELIX 37 37 ASP B 320 LEU B 337 1 18 HELIX 38 38 ALA B 350 GLY B 355 1 6 HELIX 39 39 LEU B 363 ALA B 375 1 13 HELIX 40 40 PRO B 385 LEU B 390 1 6 HELIX 41 41 HIS B 397 TRP B 400 5 4 HELIX 42 42 ASP B 401 LEU B 411 1 11 HELIX 43 43 GLU B 412 ARG B 417 1 6 HELIX 44 44 LYS B 423 MET B 430 1 8 HELIX 45 45 PRO B 435 ASN B 440 1 6 HELIX 46 46 SER B 454 ASP B 462 1 9 HELIX 47 47 ARG B 469 VAL B 486 1 18 HELIX 48 48 HIS B 491 VAL B 495 5 5 HELIX 49 49 ASP B 496 ARG B 507 1 12 SHEET 1 A 7 SER A 33 ASP A 36 0 SHEET 2 A 7 ALA A 47 HIS A 52 -1 O LEU A 50 N THR A 35 SHEET 3 A 7 GLY A 11 ARG A 17 -1 N LEU A 13 O THR A 49 SHEET 4 A 7 GLU A 151 SER A 155 -1 O ALA A 154 N ALA A 14 SHEET 5 A 7 TYR A 144 ALA A 148 -1 N TYR A 144 O SER A 155 SHEET 6 A 7 TYR A 185 GLN A 186 -1 O TYR A 185 N THR A 145 SHEET 7 A 7 ARG A 176 ARG A 177 -1 N ARG A 176 O GLN A 186 SHEET 1 B 6 VAL A 62 SER A 65 0 SHEET 2 B 6 THR A 71 ILE A 79 -1 O THR A 71 N SER A 65 SHEET 3 B 6 GLY A 119 THR A 127 -1 O ALA A 122 N ALA A 76 SHEET 4 B 6 ARG A 130 THR A 135 -1 O LEU A 132 N VAL A 125 SHEET 5 B 6 ALA A 191 ASP A 196 -1 O ILE A 195 N VAL A 131 SHEET 6 B 6 THR A 201 ARG A 206 -1 O VAL A 203 N ASP A 194 SHEET 1 C 5 ARG A 294 ILE A 300 0 SHEET 2 C 5 ASP A 269 THR A 275 1 N GLY A 274 O ILE A 300 SHEET 3 C 5 LEU A 245 VAL A 247 1 N VAL A 246 O ASP A 269 SHEET 4 C 5 ARG A 343 LEU A 345 1 O LEU A 345 N LEU A 245 SHEET 5 C 5 TRP A 394 THR A 396 1 O TRP A 394 N ILE A 344 SHEET 1 D 7 SER B 33 ASP B 36 0 SHEET 2 D 7 ALA B 47 HIS B 52 -1 O LEU B 50 N THR B 35 SHEET 3 D 7 GLY B 11 ALA B 16 -1 N LEU B 13 O THR B 49 SHEET 4 D 7 GLU B 151 SER B 155 -1 O VAL B 152 N ALA B 16 SHEET 5 D 7 TYR B 144 ALA B 148 -1 N TYR B 144 O SER B 155 SHEET 6 D 7 TYR B 185 GLN B 186 -1 O TYR B 185 N THR B 145 SHEET 7 D 7 ARG B 176 ARG B 177 -1 N ARG B 176 O GLN B 186 SHEET 1 E 6 VAL B 62 ARG B 64 0 SHEET 2 E 6 THR B 71 ILE B 79 -1 O ALA B 73 N ALA B 63 SHEET 3 E 6 GLY B 119 THR B 127 -1 O ALA B 122 N ALA B 76 SHEET 4 E 6 ARG B 130 THR B 135 -1 O LEU B 132 N VAL B 125 SHEET 5 E 6 ALA B 191 ASP B 196 -1 O ILE B 195 N VAL B 131 SHEET 6 E 6 THR B 201 ARG B 206 -1 O THR B 201 N ASP B 196 SHEET 1 F 5 ARG B 294 ILE B 300 0 SHEET 2 F 5 ASP B 269 THR B 275 1 N GLY B 274 O ILE B 300 SHEET 3 F 5 LEU B 245 VAL B 247 1 N VAL B 246 O ASP B 269 SHEET 4 F 5 ARG B 343 LEU B 345 1 O LEU B 345 N LEU B 245 SHEET 5 F 5 TRP B 394 THR B 396 1 O TRP B 394 N ILE B 344 CISPEP 1 GLY B 92 PRO B 93 0 7.56 CRYST1 61.179 97.469 80.968 90.00 90.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016345 0.000000 0.000121 0.00000 SCALE2 0.000000 0.010260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012351 0.00000