data_1M3W # _entry.id 1M3W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1M3W RCSB RCSB016565 WWPDB D_1000016565 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1M3W _pdbx_database_status.recvd_initial_deposition_date 2002-07-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, S.S.' 1 'Gibney, B.R.' 2 'Stayrook, S.E.' 3 'Dutton, P.L.' 4 'Lewis, M.' 5 # _citation.id primary _citation.title 'X-ray Structure of a Maquette Scaffold' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 326 _citation.page_first 1219 _citation.page_last 1225 _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12589764 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)01441-9' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Huang, S.S.' 1 primary 'Gibney, B.R.' 2 primary 'Stayrook, S.E.' 3 primary 'Dutton, P.L.' 4 primary 'Lewis, M.' 5 # _cell.entry_id 1M3W _cell.length_a 26.900 _cell.length_b 48.800 _cell.length_c 46.700 _cell.angle_alpha 90.00 _cell.angle_beta 104.70 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M3W _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn H10H24 3806.542 4 ? ? ? 'Molecular Maquette Scaffold' 2 non-polymer syn 'MERCURY (II) ION' 200.590 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CGGGEIWKLHEEFLKKFEELLKLHEERLKKM(NH2)' _entity_poly.pdbx_seq_one_letter_code_can CGGGEIWKLHEEFLKKFEELLKLHEERLKKMX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 GLY n 1 3 GLY n 1 4 GLY n 1 5 GLU n 1 6 ILE n 1 7 TRP n 1 8 LYS n 1 9 LEU n 1 10 HIS n 1 11 GLU n 1 12 GLU n 1 13 PHE n 1 14 LEU n 1 15 LYS n 1 16 LYS n 1 17 PHE n 1 18 GLU n 1 19 GLU n 1 20 LEU n 1 21 LEU n 1 22 LYS n 1 23 LEU n 1 24 HIS n 1 25 GLU n 1 26 GLU n 1 27 ARG n 1 28 LEU n 1 29 LYS n 1 30 LYS n 1 31 MET n 1 32 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THIS PROTEIN WAS CHEMICALLY SYNTHESIZED BY Solid phase protein synthesis using Fmoc protected amino acids.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1M3W _struct_ref.pdbx_db_accession 1M3W _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1M3W A 1 ? 32 ? 1M3W 1 ? 32 ? 1 32 2 1 1M3W B 1 ? 32 ? 1M3W 1 ? 32 ? 1 32 3 1 1M3W C 1 ? 32 ? 1M3W 1 ? 32 ? 1 32 4 1 1M3W D 1 ? 32 ? 1M3W 1 ? 32 ? 1 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HG non-polymer . 'MERCURY (II) ION' ? 'Hg 2' 200.590 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.entry_id 1M3W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.83 _exptl_crystal.density_Matthews 1.95 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PEG 2000MME, HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type BRANDEIS _diffrn_detector.pdbx_collection_date 2000-04-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.98245 1.0 2 1.00191 1.0 3 1.009757 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.98245, 1.00191, 1.009757' # _reflns.entry_id 1M3W _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.73 _reflns.number_obs 3188 _reflns.number_all 4649 _reflns.percent_possible_obs 86.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.047 _reflns.pdbx_netI_over_sigmaI 23.3 _reflns.B_iso_Wilson_estimate 90.3 _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.73 _reflns_shell.d_res_low 2.83 _reflns_shell.percent_possible_all 96.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.105 _reflns_shell.meanI_over_sigI_obs 12 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 324 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1M3W _refine.ls_number_reflns_obs 2820 _refine.ls_number_reflns_all 2822 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 618561.91 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 9.99 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 98.0 _refine.ls_R_factor_obs 0.234 _refine.ls_R_factor_all 0.2357 _refine.ls_R_factor_R_work 0.234 _refine.ls_R_factor_R_free 0.278 _refine.ls_R_factor_R_free_error 0.024 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 135 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 39.5 _refine.aniso_B[1][1] 8.86 _refine.aniso_B[2][2] -5.83 _refine.aniso_B[3][3] -3.03 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 8.61 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.447641 _refine.solvent_model_param_bsol 36.8175 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'bulk solvent correction by CNS1.1, density level 0.44 e/A^3, B-factor 36.7456 A^2' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1M3W _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.36 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.41 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1044 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1046 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 9.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 15.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.75 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.78 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.85 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.69 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.15 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.97 _refine_ls_shell.number_reflns_R_work 430 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 93.1 _refine_ls_shell.R_factor_R_free 0.338 _refine_ls_shell.R_factor_R_free_error 0.082 _refine_ls_shell.percent_reflns_R_free 3.8 _refine_ls_shell.number_reflns_R_free 17 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 5 CAPPING.PARAM CAPPING.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1M3W _struct.title 'Crystal Structure of a Molecular Maquette Scaffold' _struct.pdbx_descriptor H10H24 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1M3W _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'four-helix bundle, heme binding, maquette, heme binding protein, electron transport, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 2 ? LYS A 30 ? GLY A 2 LYS A 30 1 ? 29 HELX_P HELX_P2 2 GLY B 3 ? MET B 31 ? GLY B 3 MET B 31 1 ? 29 HELX_P HELX_P3 3 GLY C 2 ? LYS C 30 ? GLY C 2 LYS C 30 1 ? 29 HELX_P HELX_P4 4 GLY D 3 ? MET D 31 ? GLY D 3 MET D 31 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MET 31 C ? ? ? 1_555 A NH2 32 N ? ? A MET 31 A NH2 32 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? B MET 31 C ? ? ? 1_555 B NH2 32 N ? ? B MET 31 B NH2 32 1_555 ? ? ? ? ? ? ? 1.322 ? covale3 covale ? ? C MET 31 C ? ? ? 1_555 C NH2 32 N ? ? C MET 31 C NH2 32 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? D MET 31 C ? ? ? 1_555 D NH2 32 N ? ? D MET 31 D NH2 32 1_555 ? ? ? ? ? ? ? 1.318 ? metalc1 metalc ? ? E HG . HG ? ? ? 1_555 A HIS 24 ND1 ? ? A HG 41 A HIS 24 1_555 ? ? ? ? ? ? ? 2.623 ? metalc2 metalc ? ? E HG . HG ? ? ? 1_555 B HIS 24 NE2 ? ? A HG 41 B HIS 24 1_555 ? ? ? ? ? ? ? 2.985 ? metalc3 metalc ? ? F HG . HG ? ? ? 1_555 C HIS 24 ND1 ? ? C HG 41 C HIS 24 1_555 ? ? ? ? ? ? ? 2.491 ? metalc4 metalc ? ? F HG . HG ? ? ? 1_555 D HIS 24 NE2 ? ? C HG 41 D HIS 24 1_555 ? ? ? ? ? ? ? 2.806 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE HG C 41' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE HG A 41' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS C 24 ? HIS C 24 . ? 1_555 ? 2 AC1 2 HIS D 24 ? HIS D 24 . ? 1_555 ? 3 AC2 2 HIS A 24 ? HIS A 24 . ? 1_555 ? 4 AC2 2 HIS B 24 ? HIS B 24 . ? 1_555 ? # _database_PDB_matrix.entry_id 1M3W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1M3W _atom_sites.fract_transf_matrix[1][1] 0.037175 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009753 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022138 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C HG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 ? ? ? A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 NH2 32 32 32 NH2 NHH A . n B 1 1 CYS 1 1 ? ? ? B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 TRP 7 7 7 TRP TRP B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 HIS 10 10 10 HIS HIS B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 PHE 13 13 13 PHE PHE B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 PHE 17 17 17 PHE PHE B . n B 1 18 GLU 18 18 18 GLU GLU B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 HIS 24 24 24 HIS HIS B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 MET 31 31 31 MET MET B . n B 1 32 NH2 32 32 32 NH2 NHH B . n C 1 1 CYS 1 1 ? ? ? C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 GLY 4 4 4 GLY GLY C . n C 1 5 GLU 5 5 5 GLU GLU C . n C 1 6 ILE 6 6 6 ILE ILE C . n C 1 7 TRP 7 7 7 TRP TRP C . n C 1 8 LYS 8 8 8 LYS LYS C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 HIS 10 10 10 HIS HIS C . n C 1 11 GLU 11 11 11 GLU GLU C . n C 1 12 GLU 12 12 12 GLU GLU C . n C 1 13 PHE 13 13 13 PHE PHE C . n C 1 14 LEU 14 14 14 LEU LEU C . n C 1 15 LYS 15 15 15 LYS LYS C . n C 1 16 LYS 16 16 16 LYS LYS C . n C 1 17 PHE 17 17 17 PHE PHE C . n C 1 18 GLU 18 18 18 GLU GLU C . n C 1 19 GLU 19 19 19 GLU GLU C . n C 1 20 LEU 20 20 20 LEU LEU C . n C 1 21 LEU 21 21 21 LEU LEU C . n C 1 22 LYS 22 22 22 LYS LYS C . n C 1 23 LEU 23 23 23 LEU LEU C . n C 1 24 HIS 24 24 24 HIS HIS C . n C 1 25 GLU 25 25 25 GLU GLU C . n C 1 26 GLU 26 26 26 GLU GLU C . n C 1 27 ARG 27 27 27 ARG ARG C . n C 1 28 LEU 28 28 28 LEU LEU C . n C 1 29 LYS 29 29 29 LYS LYS C . n C 1 30 LYS 30 30 30 LYS LYS C . n C 1 31 MET 31 31 31 MET MET C . n C 1 32 NH2 32 32 32 NH2 NHH C . n D 1 1 CYS 1 1 ? ? ? D . n D 1 2 GLY 2 2 2 GLY GLY D . n D 1 3 GLY 3 3 3 GLY GLY D . n D 1 4 GLY 4 4 4 GLY GLY D . n D 1 5 GLU 5 5 5 GLU GLU D . n D 1 6 ILE 6 6 6 ILE ILE D . n D 1 7 TRP 7 7 7 TRP TRP D . n D 1 8 LYS 8 8 8 LYS LYS D . n D 1 9 LEU 9 9 9 LEU LEU D . n D 1 10 HIS 10 10 10 HIS HIS D . n D 1 11 GLU 11 11 11 GLU GLU D . n D 1 12 GLU 12 12 12 GLU GLU D . n D 1 13 PHE 13 13 13 PHE PHE D . n D 1 14 LEU 14 14 14 LEU LEU D . n D 1 15 LYS 15 15 15 LYS LYS D . n D 1 16 LYS 16 16 16 LYS LYS D . n D 1 17 PHE 17 17 17 PHE PHE D . n D 1 18 GLU 18 18 18 GLU GLU D . n D 1 19 GLU 19 19 19 GLU GLU D . n D 1 20 LEU 20 20 20 LEU LEU D . n D 1 21 LEU 21 21 21 LEU LEU D . n D 1 22 LYS 22 22 22 LYS LYS D . n D 1 23 LEU 23 23 23 LEU LEU D . n D 1 24 HIS 24 24 24 HIS HIS D . n D 1 25 GLU 25 25 25 GLU GLU D . n D 1 26 GLU 26 26 26 GLU GLU D . n D 1 27 ARG 27 27 27 ARG ARG D . n D 1 28 LEU 28 28 28 LEU LEU D . n D 1 29 LYS 29 29 29 LYS LYS D . n D 1 30 LYS 30 30 30 LYS LYS D . n D 1 31 MET 31 31 31 MET MET D . n D 1 32 NH2 32 32 32 NH2 NHH D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6320 ? 1 MORE -119 ? 1 'SSA (A^2)' 7590 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 24 ? A HIS 24 ? 1_555 HG ? E HG . ? A HG 41 ? 1_555 NE2 ? B HIS 24 ? B HIS 24 ? 1_555 66.9 ? 2 ND1 ? C HIS 24 ? C HIS 24 ? 1_555 HG ? F HG . ? C HG 41 ? 1_555 NE2 ? D HIS 24 ? D HIS 24 ? 1_555 71.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-02-18 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 CNS refinement 1.0 ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 31 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 31 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SD _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 31 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 92.43 _pdbx_validate_rmsd_angle.angle_target_value 112.40 _pdbx_validate_rmsd_angle.angle_deviation -19.97 _pdbx_validate_rmsd_angle.angle_standard_deviation 3.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 30 ? ? -55.14 -5.86 2 1 LYS C 30 ? ? -55.29 -6.70 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 1 ? A CYS 1 2 1 Y 1 B CYS 1 ? B CYS 1 3 1 Y 1 C CYS 1 ? C CYS 1 4 1 Y 1 D CYS 1 ? D CYS 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'MERCURY (II) ION' _pdbx_entity_nonpoly.comp_id HG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HG 1 41 1 HG HG A . F 2 HG 1 41 1 HG HG C . #