data_1M4W # _entry.id 1M4W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1M4W RCSB RCSB016601 WWPDB D_1000016601 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1M4W _pdbx_database_status.recvd_initial_deposition_date 2002-07-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hakulinen, N.' 1 'Turunen, O.' 2 'Janis, J.' 3 'Leisola, M.' 4 'Rouvinen, J.' 5 # _citation.id primary _citation.title ;Three-dimensional structures of thermophilic beta-1,4-xylanases from Chaetomium thermophilum and Nonomuraea flexuosa. Comparison of twelve xylanases in relation to their thermal stability. ; _citation.journal_abbrev Eur.J.Biochem. _citation.journal_volume 270 _citation.page_first 1399 _citation.page_last 1412 _citation.year 2003 _citation.journal_id_ASTM EJBCAI _citation.country IX _citation.journal_id_ISSN 0014-2956 _citation.journal_id_CSD 0262 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12653995 _citation.pdbx_database_id_DOI 10.1046/j.1432-1033.2003.03496.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hakulinen, N.' 1 ? primary 'Turunen, O.' 2 ? primary 'Leisola, M.' 3 ? primary 'Rouvinen, J.' 4 ? # _cell.entry_id 1M4W _cell.length_a 37.034 _cell.length_b 37.034 _cell.length_c 191.808 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1M4W _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man endoxylanase 21802.447 1 3.2.1.8 ? ? ? 2 branched man ;alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 748.682 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 183 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DTTITQNQTGYDNGYFYSFWTDAPGTVSMTLHSGGSYSTSWRNTGNFVAGKGWSTGGRRTVTYNASFNPSGNAYLTLYGW TRNPLVEYYIVESWGTYRPTGTYKGTVTTDGGTYDIYETWRYNAPSIEGTRTFQQFWSVRQQKRTSGTITIGNHFDAWAR AGMNLGSHDYQIMATEGYQSSGSSTVSISEGGNPGNP ; _entity_poly.pdbx_seq_one_letter_code_can ;DTTITQNQTGYDNGYFYSFWTDAPGTVSMTLHSGGSYSTSWRNTGNFVAGKGWSTGGRRTVTYNASFNPSGNAYLTLYGW TRNPLVEYYIVESWGTYRPTGTYKGTVTTDGGTYDIYETWRYNAPSIEGTRTFQQFWSVRQQKRTSGTITIGNHFDAWAR AGMNLGSHDYQIMATEGYQSSGSSTVSISEGGNPGNP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 THR n 1 3 THR n 1 4 ILE n 1 5 THR n 1 6 GLN n 1 7 ASN n 1 8 GLN n 1 9 THR n 1 10 GLY n 1 11 TYR n 1 12 ASP n 1 13 ASN n 1 14 GLY n 1 15 TYR n 1 16 PHE n 1 17 TYR n 1 18 SER n 1 19 PHE n 1 20 TRP n 1 21 THR n 1 22 ASP n 1 23 ALA n 1 24 PRO n 1 25 GLY n 1 26 THR n 1 27 VAL n 1 28 SER n 1 29 MET n 1 30 THR n 1 31 LEU n 1 32 HIS n 1 33 SER n 1 34 GLY n 1 35 GLY n 1 36 SER n 1 37 TYR n 1 38 SER n 1 39 THR n 1 40 SER n 1 41 TRP n 1 42 ARG n 1 43 ASN n 1 44 THR n 1 45 GLY n 1 46 ASN n 1 47 PHE n 1 48 VAL n 1 49 ALA n 1 50 GLY n 1 51 LYS n 1 52 GLY n 1 53 TRP n 1 54 SER n 1 55 THR n 1 56 GLY n 1 57 GLY n 1 58 ARG n 1 59 ARG n 1 60 THR n 1 61 VAL n 1 62 THR n 1 63 TYR n 1 64 ASN n 1 65 ALA n 1 66 SER n 1 67 PHE n 1 68 ASN n 1 69 PRO n 1 70 SER n 1 71 GLY n 1 72 ASN n 1 73 ALA n 1 74 TYR n 1 75 LEU n 1 76 THR n 1 77 LEU n 1 78 TYR n 1 79 GLY n 1 80 TRP n 1 81 THR n 1 82 ARG n 1 83 ASN n 1 84 PRO n 1 85 LEU n 1 86 VAL n 1 87 GLU n 1 88 TYR n 1 89 TYR n 1 90 ILE n 1 91 VAL n 1 92 GLU n 1 93 SER n 1 94 TRP n 1 95 GLY n 1 96 THR n 1 97 TYR n 1 98 ARG n 1 99 PRO n 1 100 THR n 1 101 GLY n 1 102 THR n 1 103 TYR n 1 104 LYS n 1 105 GLY n 1 106 THR n 1 107 VAL n 1 108 THR n 1 109 THR n 1 110 ASP n 1 111 GLY n 1 112 GLY n 1 113 THR n 1 114 TYR n 1 115 ASP n 1 116 ILE n 1 117 TYR n 1 118 GLU n 1 119 THR n 1 120 TRP n 1 121 ARG n 1 122 TYR n 1 123 ASN n 1 124 ALA n 1 125 PRO n 1 126 SER n 1 127 ILE n 1 128 GLU n 1 129 GLY n 1 130 THR n 1 131 ARG n 1 132 THR n 1 133 PHE n 1 134 GLN n 1 135 GLN n 1 136 PHE n 1 137 TRP n 1 138 SER n 1 139 VAL n 1 140 ARG n 1 141 GLN n 1 142 GLN n 1 143 LYS n 1 144 ARG n 1 145 THR n 1 146 SER n 1 147 GLY n 1 148 THR n 1 149 ILE n 1 150 THR n 1 151 ILE n 1 152 GLY n 1 153 ASN n 1 154 HIS n 1 155 PHE n 1 156 ASP n 1 157 ALA n 1 158 TRP n 1 159 ALA n 1 160 ARG n 1 161 ALA n 1 162 GLY n 1 163 MET n 1 164 ASN n 1 165 LEU n 1 166 GLY n 1 167 SER n 1 168 HIS n 1 169 ASP n 1 170 TYR n 1 171 GLN n 1 172 ILE n 1 173 MET n 1 174 ALA n 1 175 THR n 1 176 GLU n 1 177 GLY n 1 178 TYR n 1 179 GLN n 1 180 SER n 1 181 SER n 1 182 GLY n 1 183 SER n 1 184 SER n 1 185 THR n 1 186 VAL n 1 187 SER n 1 188 ILE n 1 189 SER n 1 190 GLU n 1 191 GLY n 1 192 GLY n 1 193 ASN n 1 194 PRO n 1 195 GLY n 1 196 ASN n 1 197 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermopolyspora _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermopolyspora flexuosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 103836 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Hypocrea jecorina' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 51453 _entity_src_gen.host_org_genus Hypocrea _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CAD48747 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DTTITQNQTGYDNGYFYSFWTDAPGTVSMTLHSGGSYSTSWRNTGNFVAGKGWSTGGRRTVTYNASFNPSGNAYLTLYGW TRNPLVEYYIVESWGTYRPTGTYKGTVTTDGGTYDIYETWRYNAPSIEGTRTFQQFWSVRQQKRTSGTITIGNHFDAWAR AGMNLGSHDYQIMATEGYQSSGSSTVSISEGGNPGNP ; _struct_ref.pdbx_align_begin 44 _struct_ref.pdbx_db_accession 23337128 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1M4W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 197 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 23337128 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 240 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 197 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1M4W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '0.8 M Ammonium sulphate, 0.1 M Sodium Acetate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 2000-10-20 _diffrn_detector.details 'MSC Confocal Blue' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1M4W _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 99 _reflns.number_all ? _reflns.number_obs 8541 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.107 _reflns.pdbx_netI_over_sigmaI 17.9 _reflns.B_iso_Wilson_estimate 23.0 _reflns.pdbx_redundancy 5.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 92.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.293 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.entry_id 1M4W _refine.ls_d_res_high 2.1 _refine.ls_d_res_low 99 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 8676 _refine.ls_number_reflns_obs 8135 _refine.ls_number_reflns_R_free 811 _refine.ls_percent_reflns_obs 97.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.146 _refine.ls_R_factor_R_free 0.209 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1ENX _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1544 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 60 _refine_hist.number_atoms_solvent 183 _refine_hist.number_atoms_total 1787 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function o_bond_d 0.0055 ? ? ? 'X-RAY DIFFRACTION' ? o_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg 1.4387 ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1M4W _struct.title 'Thermophilic b-1,4-xylanase from Nonomuraea flexuosa' _struct.pdbx_descriptor 'endoxylanase (E.C.3.2.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1M4W _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'xylanase, glycosyl hydrolase, family 11, thermostability, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ILE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 151 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 161 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ILE _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 151 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 161 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A ASN 7 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 7 B NAG 1 1_555 ? ? ? ? ? ? ? 1.446 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale4 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.402 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 83 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 83 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 84 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 84 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.20 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 3 ? ILE A 4 ? THR A 3 ILE A 4 A 2 VAL A 27 ? LEU A 31 ? VAL A 27 LEU A 31 A 3 SER A 36 ? TRP A 41 ? SER A 36 TRP A 41 A 4 SER A 181 ? GLU A 190 ? SER A 181 GLU A 190 A 5 THR A 60 ? SER A 70 ? THR A 60 SER A 70 A 6 SER A 146 ? THR A 150 ? SER A 146 THR A 150 B 1 GLN A 8 ? ASP A 12 ? GLN A 8 ASP A 12 B 2 TYR A 15 ? THR A 21 ? TYR A 15 THR A 21 B 3 ASN A 46 ? TRP A 53 ? ASN A 46 TRP A 53 B 4 SER A 167 ? TYR A 178 ? SER A 167 TYR A 178 B 5 ALA A 73 ? ARG A 82 ? ALA A 73 ARG A 82 B 6 VAL A 86 ? TRP A 94 ? VAL A 86 TRP A 94 B 7 ARG A 131 ? ARG A 140 ? ARG A 131 ARG A 140 B 8 GLY A 112 ? ALA A 124 ? GLY A 112 ALA A 124 B 9 THR A 102 ? THR A 109 ? THR A 102 THR A 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 4 ? N ILE A 4 O MET A 29 ? O MET A 29 A 2 3 N THR A 30 ? N THR A 30 O SER A 38 ? O SER A 38 A 3 4 N TRP A 41 ? N TRP A 41 O GLY A 182 ? O GLY A 182 A 4 5 O SER A 181 ? O SER A 181 N SER A 70 ? N SER A 70 A 5 6 N VAL A 61 ? N VAL A 61 O ILE A 149 ? O ILE A 149 B 1 2 N ASP A 12 ? N ASP A 12 O TYR A 15 ? O TYR A 15 B 2 3 N PHE A 16 ? N PHE A 16 O GLY A 52 ? O GLY A 52 B 3 4 N TRP A 53 ? N TRP A 53 O GLN A 171 ? O GLN A 171 B 4 5 O ILE A 172 ? O ILE A 172 N TYR A 78 ? N TYR A 78 B 5 6 N GLY A 79 ? N GLY A 79 O TYR A 88 ? O TYR A 88 B 6 7 N TYR A 89 ? N TYR A 89 O PHE A 136 ? O PHE A 136 B 7 8 O VAL A 139 ? O VAL A 139 N ASP A 115 ? N ASP A 115 B 8 9 O ILE A 116 ? O ILE A 116 N GLY A 105 ? N GLY A 105 # _database_PDB_matrix.entry_id 1M4W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1M4W _atom_sites.fract_transf_matrix[1][1] 0.027002 _atom_sites.fract_transf_matrix[1][2] 0.015590 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031179 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005214 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 TRP 20 20 20 TRP TRP A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 TRP 80 80 80 TRP TRP A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 TRP 94 94 94 TRP TRP A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 TRP 120 120 120 TRP TRP A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 GLN 135 135 135 GLN GLN A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 GLN 142 142 142 GLN GLN A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 ASN 153 153 153 ASN ASN A . n A 1 154 HIS 154 154 154 HIS HIS A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 TRP 158 158 158 TRP TRP A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 ARG 160 160 160 ARG ARG A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 MET 163 163 163 MET MET A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 TYR 170 170 170 TYR TYR A . n A 1 171 GLN 171 171 171 GLN GLN A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 MET 173 173 173 MET MET A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 GLN 179 179 179 GLN GLN A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 ILE 188 188 188 ILE ILE A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 PRO 197 197 197 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT 1 900 900 ACT ACT A . D 4 GOL 1 800 800 GOL GOL A . E 5 HOH 1 901 1 HOH HOH A . E 5 HOH 2 902 2 HOH HOH A . E 5 HOH 3 903 3 HOH HOH A . E 5 HOH 4 904 4 HOH HOH A . E 5 HOH 5 905 5 HOH HOH A . E 5 HOH 6 906 6 HOH HOH A . E 5 HOH 7 907 7 HOH HOH A . E 5 HOH 8 908 8 HOH HOH A . E 5 HOH 9 909 9 HOH HOH A . E 5 HOH 10 910 10 HOH HOH A . E 5 HOH 11 911 11 HOH HOH A . E 5 HOH 12 912 12 HOH HOH A . E 5 HOH 13 913 13 HOH HOH A . E 5 HOH 14 914 14 HOH HOH A . E 5 HOH 15 915 15 HOH HOH A . E 5 HOH 16 916 16 HOH HOH A . E 5 HOH 17 917 17 HOH HOH A . E 5 HOH 18 918 18 HOH HOH A . E 5 HOH 19 919 19 HOH HOH A . E 5 HOH 20 920 20 HOH HOH A . E 5 HOH 21 921 21 HOH HOH A . E 5 HOH 22 922 22 HOH HOH A . E 5 HOH 23 923 23 HOH HOH A . E 5 HOH 24 924 24 HOH HOH A . E 5 HOH 25 925 25 HOH HOH A . E 5 HOH 26 926 26 HOH HOH A . E 5 HOH 27 927 27 HOH HOH A . E 5 HOH 28 928 28 HOH HOH A . E 5 HOH 29 929 29 HOH HOH A . E 5 HOH 30 930 30 HOH HOH A . E 5 HOH 31 931 31 HOH HOH A . E 5 HOH 32 932 32 HOH HOH A . E 5 HOH 33 933 33 HOH HOH A . E 5 HOH 34 934 34 HOH HOH A . E 5 HOH 35 935 35 HOH HOH A . E 5 HOH 36 936 36 HOH HOH A . E 5 HOH 37 937 37 HOH HOH A . E 5 HOH 38 938 38 HOH HOH A . E 5 HOH 39 939 39 HOH HOH A . E 5 HOH 40 940 40 HOH HOH A . E 5 HOH 41 941 41 HOH HOH A . E 5 HOH 42 942 42 HOH HOH A . E 5 HOH 43 943 43 HOH HOH A . E 5 HOH 44 944 44 HOH HOH A . E 5 HOH 45 945 45 HOH HOH A . E 5 HOH 46 946 46 HOH HOH A . E 5 HOH 47 947 47 HOH HOH A . E 5 HOH 48 948 48 HOH HOH A . E 5 HOH 49 949 49 HOH HOH A . E 5 HOH 50 950 50 HOH HOH A . E 5 HOH 51 951 51 HOH HOH A . E 5 HOH 52 952 52 HOH HOH A . E 5 HOH 53 953 53 HOH HOH A . E 5 HOH 54 954 54 HOH HOH A . E 5 HOH 55 955 55 HOH HOH A . E 5 HOH 56 956 56 HOH HOH A . E 5 HOH 57 957 57 HOH HOH A . E 5 HOH 58 958 58 HOH HOH A . E 5 HOH 59 959 59 HOH HOH A . E 5 HOH 60 960 60 HOH HOH A . E 5 HOH 61 961 61 HOH HOH A . E 5 HOH 62 962 62 HOH HOH A . E 5 HOH 63 963 63 HOH HOH A . E 5 HOH 64 964 64 HOH HOH A . E 5 HOH 65 965 65 HOH HOH A . E 5 HOH 66 966 66 HOH HOH A . E 5 HOH 67 967 67 HOH HOH A . E 5 HOH 68 968 68 HOH HOH A . E 5 HOH 69 969 69 HOH HOH A . E 5 HOH 70 970 70 HOH HOH A . E 5 HOH 71 971 71 HOH HOH A . E 5 HOH 72 972 72 HOH HOH A . E 5 HOH 73 973 73 HOH HOH A . E 5 HOH 74 974 74 HOH HOH A . E 5 HOH 75 975 75 HOH HOH A . E 5 HOH 76 976 76 HOH HOH A . E 5 HOH 77 977 77 HOH HOH A . E 5 HOH 78 978 78 HOH HOH A . E 5 HOH 79 979 79 HOH HOH A . E 5 HOH 80 980 80 HOH HOH A . E 5 HOH 81 981 81 HOH HOH A . E 5 HOH 82 982 82 HOH HOH A . E 5 HOH 83 983 83 HOH HOH A . E 5 HOH 84 984 84 HOH HOH A . E 5 HOH 85 985 85 HOH HOH A . E 5 HOH 86 986 86 HOH HOH A . E 5 HOH 87 987 87 HOH HOH A . E 5 HOH 88 988 88 HOH HOH A . E 5 HOH 89 989 89 HOH HOH A . E 5 HOH 90 990 90 HOH HOH A . E 5 HOH 91 991 91 HOH HOH A . E 5 HOH 92 992 92 HOH HOH A . E 5 HOH 93 993 93 HOH HOH A . E 5 HOH 94 994 94 HOH HOH A . E 5 HOH 95 995 95 HOH HOH A . E 5 HOH 96 996 96 HOH HOH A . E 5 HOH 97 997 97 HOH HOH A . E 5 HOH 98 998 98 HOH HOH A . E 5 HOH 99 999 99 HOH HOH A . E 5 HOH 100 1000 100 HOH HOH A . E 5 HOH 101 1001 101 HOH HOH A . E 5 HOH 102 1002 102 HOH HOH A . E 5 HOH 103 1003 103 HOH HOH A . E 5 HOH 104 1004 104 HOH HOH A . E 5 HOH 105 1005 105 HOH HOH A . E 5 HOH 106 1006 106 HOH HOH A . E 5 HOH 107 1007 107 HOH HOH A . E 5 HOH 108 1008 108 HOH HOH A . E 5 HOH 109 1009 109 HOH HOH A . E 5 HOH 110 1010 110 HOH HOH A . E 5 HOH 111 1011 111 HOH HOH A . E 5 HOH 112 1012 112 HOH HOH A . E 5 HOH 113 1013 113 HOH HOH A . E 5 HOH 114 1014 114 HOH HOH A . E 5 HOH 115 1015 115 HOH HOH A . E 5 HOH 116 1016 116 HOH HOH A . E 5 HOH 117 1017 117 HOH HOH A . E 5 HOH 118 1018 118 HOH HOH A . E 5 HOH 119 1019 119 HOH HOH A . E 5 HOH 120 1020 120 HOH HOH A . E 5 HOH 121 1021 121 HOH HOH A . E 5 HOH 122 1022 122 HOH HOH A . E 5 HOH 123 1023 123 HOH HOH A . E 5 HOH 124 1024 124 HOH HOH A . E 5 HOH 125 1025 125 HOH HOH A . E 5 HOH 126 1026 126 HOH HOH A . E 5 HOH 127 1027 127 HOH HOH A . E 5 HOH 128 1028 128 HOH HOH A . E 5 HOH 129 1029 129 HOH HOH A . E 5 HOH 130 1030 130 HOH HOH A . E 5 HOH 131 1031 131 HOH HOH A . E 5 HOH 132 1032 132 HOH HOH A . E 5 HOH 133 1033 133 HOH HOH A . E 5 HOH 134 1034 134 HOH HOH A . E 5 HOH 135 1035 135 HOH HOH A . E 5 HOH 136 1036 136 HOH HOH A . E 5 HOH 137 1037 137 HOH HOH A . E 5 HOH 138 1038 138 HOH HOH A . E 5 HOH 139 1039 139 HOH HOH A . E 5 HOH 140 1040 140 HOH HOH A . E 5 HOH 141 1041 141 HOH HOH A . E 5 HOH 142 1042 142 HOH HOH A . E 5 HOH 143 1043 143 HOH HOH A . E 5 HOH 144 1044 144 HOH HOH A . E 5 HOH 145 1045 145 HOH HOH A . E 5 HOH 146 1046 146 HOH HOH A . E 5 HOH 147 1047 147 HOH HOH A . E 5 HOH 148 1048 148 HOH HOH A . E 5 HOH 149 1049 149 HOH HOH A . E 5 HOH 150 1050 150 HOH HOH A . E 5 HOH 151 1051 151 HOH HOH A . E 5 HOH 152 1052 152 HOH HOH A . E 5 HOH 153 1053 153 HOH HOH A . E 5 HOH 154 1054 154 HOH HOH A . E 5 HOH 155 1055 155 HOH HOH A . E 5 HOH 156 1056 156 HOH HOH A . E 5 HOH 157 1057 157 HOH HOH A . E 5 HOH 158 1058 158 HOH HOH A . E 5 HOH 159 1059 159 HOH HOH A . E 5 HOH 160 1060 160 HOH HOH A . E 5 HOH 161 1061 161 HOH HOH A . E 5 HOH 162 1062 162 HOH HOH A . E 5 HOH 163 1063 163 HOH HOH A . E 5 HOH 164 1064 164 HOH HOH A . E 5 HOH 165 1065 165 HOH HOH A . E 5 HOH 166 1066 166 HOH HOH A . E 5 HOH 167 1067 167 HOH HOH A . E 5 HOH 168 1068 168 HOH HOH A . E 5 HOH 169 1069 169 HOH HOH A . E 5 HOH 170 1070 170 HOH HOH A . E 5 HOH 171 1071 171 HOH HOH A . E 5 HOH 172 1072 172 HOH HOH A . E 5 HOH 173 1073 173 HOH HOH A . E 5 HOH 174 1074 174 HOH HOH A . E 5 HOH 175 1075 175 HOH HOH A . E 5 HOH 176 1076 176 HOH HOH A . E 5 HOH 177 1077 177 HOH HOH A . E 5 HOH 178 1078 178 HOH HOH A . E 5 HOH 179 1079 179 HOH HOH A . E 5 HOH 180 1080 180 HOH HOH A . E 5 HOH 181 1081 181 HOH HOH A . E 5 HOH 182 1082 182 HOH HOH A . E 5 HOH 183 1083 183 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-08 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-02-01 5 'Structure model' 1 4 2018-04-04 6 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Atomic model' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' diffrn_source 2 6 'Structure model' atom_site 3 6 'Structure model' chem_comp 4 6 'Structure model' entity 5 6 'Structure model' pdbx_branch_scheme 6 6 'Structure model' pdbx_chem_comp_identifier 7 6 'Structure model' pdbx_entity_branch 8 6 'Structure model' pdbx_entity_branch_descriptor 9 6 'Structure model' pdbx_entity_branch_link 10 6 'Structure model' pdbx_entity_branch_list 11 6 'Structure model' pdbx_entity_nonpoly 12 6 'Structure model' pdbx_nonpoly_scheme 13 6 'Structure model' pdbx_struct_assembly_gen 14 6 'Structure model' struct_asym 15 6 'Structure model' struct_conn 16 6 'Structure model' struct_site 17 6 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.type' 2 6 'Structure model' '_atom_site.auth_asym_id' 3 6 'Structure model' '_atom_site.auth_seq_id' 4 6 'Structure model' '_atom_site.label_asym_id' 5 6 'Structure model' '_atom_site.label_entity_id' 6 6 'Structure model' '_chem_comp.name' 7 6 'Structure model' '_chem_comp.type' 8 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 9 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 6 'Structure model' '_struct_conn.pdbx_role' 11 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.0 ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE At the time of processing, there was no database sequence available for this protein. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 83 ? ? 39.77 76.16 2 1 ASN A 123 ? ? 34.78 55.95 3 1 ASP A 169 ? ? -110.89 -140.19 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 B NAG 701 n B 2 NAG 2 B NAG 2 B NAG 702 n B 2 BMA 3 B BMA 3 B MAN 703 n B 2 MAN 4 B MAN 4 B MAN 704 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c6-d1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ACETATE ION' ACT 4 GLYCEROL GOL 5 water HOH #