HEADER HYDROLASE 09-JUL-02 1M58 TITLE SOLUTION STRUCTURE OF CYTOTOXIC RC-RNASE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RC-RNASE2 RIBONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RANA CATESBEIANA; SOURCE 3 ORGANISM_COMMON: BULLFROG; SOURCE 4 ORGANISM_TAXID: 8400; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11D KEYWDS BULLFROG, CYTOTOXICITY, RIBONUCLEASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR C.-H.HSU,Y.-D.LIAO,S.-H.WU,C.CHEN REVDAT 4 21-DEC-22 1M58 1 SEQADV REVDAT 3 23-FEB-22 1M58 1 REMARK REVDAT 2 24-FEB-09 1M58 1 VERSN REVDAT 1 09-JAN-03 1M58 0 JRNL AUTH C.H.HSU,L.W.CHEN,Y.D.LIAO,S.H.WU,C.CHEN JRNL TITL 1H, 15N AND 13C RESONANCE ASSIGNMENTS AND SECONDARY JRNL TITL 2 STRUCTURE DETERMINATION OF THE RC-RNASE 2 FROM OOCYTES OF JRNL TITL 3 BULLFROG RANA CATESBEIANA. JRNL REF J.BIOMOL.NMR V. 19 87 2001 JRNL REFN ISSN 0925-2738 JRNL PMID 11246862 JRNL DOI 10.1023/A:1008348302036 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 98 REMARK 3 AUTHORS : BRUKER (XWINNMR), MSI (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M58 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016613. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 310 REMARK 210 PH : 3.5; 3.5 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM RRC-RNASE2 U-15N,13C; REMARK 210 50MM PHOSPHATE BUFFER; 1.5 MM REMARK 210 RRC-RNASE2 U-15N; 50MM PHOSPHATE REMARK 210 BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA 2.6, X-PLOR 98 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 600 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 2 -41.43 -131.98 REMARK 500 1 ASP A 17 50.58 -98.77 REMARK 500 1 ASP A 30 49.29 74.07 REMARK 500 1 LYS A 50 42.00 -100.51 REMARK 500 1 LYS A 73 99.90 -171.80 REMARK 500 1 LEU A 74 161.88 -43.86 REMARK 500 1 PRO A 75 -76.48 -79.02 REMARK 500 1 VAL A 97 -17.86 -140.38 REMARK 500 1 ALA A 101 -157.33 -167.33 REMARK 500 1 VAL A 102 -139.46 -109.19 REMARK 500 2 ASN A 3 -167.83 -129.83 REMARK 500 2 ASP A 17 37.03 -99.36 REMARK 500 2 ALA A 27 16.89 55.40 REMARK 500 2 LYS A 32 -173.45 -67.17 REMARK 500 2 LYS A 50 44.92 -97.77 REMARK 500 2 ASN A 51 -45.10 -141.53 REMARK 500 2 LYS A 73 107.53 177.75 REMARK 500 2 LEU A 74 169.26 -49.25 REMARK 500 2 GLU A 92 131.07 -173.56 REMARK 500 2 LYS A 94 -7.96 83.43 REMARK 500 2 ALA A 101 -163.76 -163.90 REMARK 500 2 VAL A 102 -152.19 -90.23 REMARK 500 3 ASP A 17 50.49 -91.96 REMARK 500 3 LYS A 32 -174.33 -55.67 REMARK 500 3 ASN A 51 -38.04 -132.44 REMARK 500 3 GLU A 92 132.41 -172.85 REMARK 500 3 LYS A 94 17.53 59.60 REMARK 500 3 ALA A 101 -163.56 -169.25 REMARK 500 3 VAL A 102 -141.39 -108.40 REMARK 500 4 VAL A 18 154.13 -47.76 REMARK 500 4 ASP A 30 48.19 70.17 REMARK 500 4 LYS A 32 -179.93 -66.52 REMARK 500 4 ASN A 51 26.52 -142.27 REMARK 500 4 LYS A 73 117.58 -173.24 REMARK 500 4 LEU A 74 169.35 -48.28 REMARK 500 4 ALA A 101 -163.14 -166.58 REMARK 500 4 VAL A 102 -147.25 -101.09 REMARK 500 5 ASP A 17 40.82 -97.27 REMARK 500 5 GLN A 33 -70.20 -58.46 REMARK 500 5 ALA A 40 176.74 179.51 REMARK 500 5 LYS A 50 42.55 -107.08 REMARK 500 5 ILE A 72 -47.82 -137.44 REMARK 500 5 LEU A 74 167.93 -48.18 REMARK 500 5 GLU A 92 135.10 -173.06 REMARK 500 5 VAL A 97 17.73 -150.14 REMARK 500 5 ALA A 101 -164.15 -169.37 REMARK 500 5 VAL A 102 -152.19 -92.37 REMARK 500 6 GLN A 2 -65.49 -145.82 REMARK 500 6 ASP A 17 46.42 -95.64 REMARK 500 6 LYS A 32 -172.10 -60.00 REMARK 500 REMARK 500 THIS ENTRY HAS 127 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.25 SIDE CHAIN REMARK 500 1 ARG A 41 0.25 SIDE CHAIN REMARK 500 1 ARG A 44 0.32 SIDE CHAIN REMARK 500 1 ARG A 71 0.32 SIDE CHAIN REMARK 500 2 ARG A 16 0.32 SIDE CHAIN REMARK 500 2 ARG A 41 0.27 SIDE CHAIN REMARK 500 2 ARG A 44 0.31 SIDE CHAIN REMARK 500 2 ARG A 71 0.19 SIDE CHAIN REMARK 500 3 ARG A 16 0.26 SIDE CHAIN REMARK 500 3 ARG A 41 0.32 SIDE CHAIN REMARK 500 3 ARG A 44 0.32 SIDE CHAIN REMARK 500 3 ARG A 71 0.20 SIDE CHAIN REMARK 500 4 ARG A 16 0.21 SIDE CHAIN REMARK 500 4 ARG A 41 0.30 SIDE CHAIN REMARK 500 4 ARG A 44 0.28 SIDE CHAIN REMARK 500 4 ARG A 71 0.31 SIDE CHAIN REMARK 500 5 ARG A 16 0.24 SIDE CHAIN REMARK 500 5 ARG A 41 0.31 SIDE CHAIN REMARK 500 5 ARG A 44 0.30 SIDE CHAIN REMARK 500 5 ARG A 71 0.18 SIDE CHAIN REMARK 500 6 ARG A 16 0.20 SIDE CHAIN REMARK 500 6 ARG A 41 0.27 SIDE CHAIN REMARK 500 6 ARG A 44 0.28 SIDE CHAIN REMARK 500 6 ARG A 71 0.32 SIDE CHAIN REMARK 500 7 ARG A 16 0.31 SIDE CHAIN REMARK 500 7 ARG A 41 0.23 SIDE CHAIN REMARK 500 7 ARG A 44 0.22 SIDE CHAIN REMARK 500 7 ARG A 71 0.31 SIDE CHAIN REMARK 500 8 ARG A 16 0.26 SIDE CHAIN REMARK 500 8 ARG A 41 0.20 SIDE CHAIN REMARK 500 8 ARG A 44 0.29 SIDE CHAIN REMARK 500 8 ARG A 71 0.23 SIDE CHAIN REMARK 500 9 ARG A 16 0.29 SIDE CHAIN REMARK 500 9 ARG A 41 0.31 SIDE CHAIN REMARK 500 9 ARG A 44 0.23 SIDE CHAIN REMARK 500 9 ARG A 71 0.22 SIDE CHAIN REMARK 500 10 ARG A 16 0.23 SIDE CHAIN REMARK 500 10 ARG A 41 0.30 SIDE CHAIN REMARK 500 10 ARG A 44 0.23 SIDE CHAIN REMARK 500 10 ARG A 71 0.30 SIDE CHAIN REMARK 500 11 ARG A 16 0.31 SIDE CHAIN REMARK 500 11 ARG A 41 0.32 SIDE CHAIN REMARK 500 11 ARG A 44 0.22 SIDE CHAIN REMARK 500 11 ARG A 71 0.29 SIDE CHAIN REMARK 500 12 ARG A 16 0.19 SIDE CHAIN REMARK 500 12 ARG A 41 0.31 SIDE CHAIN REMARK 500 12 ARG A 44 0.31 SIDE CHAIN REMARK 500 12 ARG A 71 0.32 SIDE CHAIN REMARK 500 13 ARG A 16 0.29 SIDE CHAIN REMARK 500 13 ARG A 41 0.23 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 60 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1M58 A 2 106 UNP Q9DFY8 Q9DFY8_RANCA 24 128 SEQADV 1M58 MET A 1 UNP Q9DFY8 INITIATING METHIONINE SEQRES 1 A 106 MET GLN ASN TRP GLU THR PHE GLN LYS LYS HIS LEU THR SEQRES 2 A 106 ASP THR ARG ASP VAL LYS CYS ASP ALA GLU MET LYS LYS SEQRES 3 A 106 ALA LEU PHE ASP CYS LYS GLN LYS ASN THR PHE ILE TYR SEQRES 4 A 106 ALA ARG PRO GLY ARG VAL GLN ALA LEU CYS LYS ASN ILE SEQRES 5 A 106 ILE VAL SER LYS ASN VAL LEU SER THR ASP GLU PHE TYR SEQRES 6 A 106 LEU SER ASP CYS ASN ARG ILE LYS LEU PRO CYS HIS TYR SEQRES 7 A 106 LYS LEU LYS LYS SER SER ASN THR ILE CYS ILE THR CYS SEQRES 8 A 106 GLU ASN LYS LEU PRO VAL HIS PHE VAL ALA VAL GLU GLU SEQRES 9 A 106 CYS PRO HELIX 1 1 ASN A 3 HIS A 11 1 9 HELIX 2 2 LYS A 19 LYS A 25 1 7 HELIX 3 3 ARG A 41 ALA A 47 1 7 SHEET 1 A 4 LEU A 12 THR A 13 0 SHEET 2 A 4 ASN A 35 TYR A 39 1 O ILE A 38 N THR A 13 SHEET 3 A 4 PHE A 64 LYS A 73 -1 O CYS A 69 N ASN A 35 SHEET 4 A 4 HIS A 77 ASN A 85 -1 O LYS A 81 N ASP A 68 SHEET 1 B 3 LYS A 56 LEU A 59 0 SHEET 2 B 3 CYS A 88 GLU A 92 -1 O ILE A 89 N VAL A 58 SHEET 3 B 3 LEU A 95 ALA A 101 -1 O ALA A 101 N CYS A 88 SSBOND 1 CYS A 20 CYS A 69 1555 1555 2.02 SSBOND 2 CYS A 31 CYS A 76 1555 1555 2.02 SSBOND 3 CYS A 49 CYS A 91 1555 1555 2.02 SSBOND 4 CYS A 88 CYS A 105 1555 1555 2.02 CISPEP 1 LEU A 74 PRO A 75 1 0.61 CISPEP 2 LEU A 74 PRO A 75 2 -0.49 CISPEP 3 LEU A 74 PRO A 75 3 -1.53 CISPEP 4 LEU A 74 PRO A 75 4 0.13 CISPEP 5 LEU A 74 PRO A 75 5 -0.15 CISPEP 6 LEU A 74 PRO A 75 6 -0.49 CISPEP 7 LEU A 74 PRO A 75 7 -0.09 CISPEP 8 LEU A 74 PRO A 75 8 -0.57 CISPEP 9 LEU A 74 PRO A 75 9 -0.17 CISPEP 10 LEU A 74 PRO A 75 10 0.41 CISPEP 11 LEU A 74 PRO A 75 11 -0.28 CISPEP 12 LEU A 74 PRO A 75 12 -0.65 CISPEP 13 LEU A 74 PRO A 75 13 0.32 CISPEP 14 LEU A 74 PRO A 75 14 -0.47 CISPEP 15 LEU A 74 PRO A 75 15 -1.19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1