data_1M5J # _entry.id 1M5J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1M5J RCSB RCSB016624 WWPDB D_1000016624 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2009-05-05 _pdbx_database_PDB_obs_spr.pdb_id 3GXY _pdbx_database_PDB_obs_spr.replace_pdb_id 1M5J _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3EZM 'trigonal wild type cyanovirin-N (at low pH)' unspecified PDB 1L5B 'tetragonal wild type cyanovirin-N (at high pH)' unspecified PDB 1M5M 'Crystal structure of Cyanovirin-N complexed to oligomannose-9 (Man-9)' unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1M5J _pdbx_database_status.recvd_initial_deposition_date 2002-07-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Botos, I.' 1 ;O'Keefe, B.R. ; 2 'Shenoy, S.R.' 3 'Cartner, L.K.' 4 'Ratner, D.M.' 5 'Seeberger, P.H.' 6 'Boyd, M.R.' 7 'Wlodawer, A.' 8 # _citation.id primary _citation.title 'STRUCTURES OF THE COMPLEXES OF A POTENT ANTI-HIV PROTEIN CYANOVIRIN-N AND HIGH MANNOSE OLIGOSACCHARIDES' _citation.journal_abbrev J.BIOL.CHEM. _citation.journal_volume 277 _citation.page_first 34336 _citation.page_last 34342 _citation.year 2002 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12110688 _citation.pdbx_database_id_DOI 10.1074/jbc.M205909200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Botos, I.' 1 primary ;O'Keefe, B.R. ; 2 primary 'Shenoy, S.R.' 3 primary 'Cartner, L.K.' 4 primary 'Ratner, D.M.' 5 primary 'Seeberger, P.H.' 6 primary 'Boyd, M.R.' 7 primary 'Wlodawer, A.' 8 # _cell.entry_id 1M5J _cell.length_a 61.352 _cell.length_b 61.352 _cell.length_c 147.568 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M5J _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Cyanovirin-N 11022.090 2 ? ? ? ? 2 non-polymer man O1-PENTYL-MANNOSE 250.289 1 ? ? ? ? 3 non-polymer man BETA-D-MANNOSE 180.156 3 ? ? ? ? 4 non-polymer man ALPHA-D-MANNOSE 180.156 5 ? ? ? ? 5 non-polymer syn '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' 207.290 1 ? ? ? ? 6 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name CV-N # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKTRAQQF VSTKINLDDHIANIDGTLKYE ; _entity_poly.pdbx_seq_one_letter_code_can ;LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKTRAQQF VSTKINLDDHIANIDGTLKYE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 GLY n 1 3 LYS n 1 4 PHE n 1 5 SER n 1 6 GLN n 1 7 THR n 1 8 CYS n 1 9 TYR n 1 10 ASN n 1 11 SER n 1 12 ALA n 1 13 ILE n 1 14 GLN n 1 15 GLY n 1 16 SER n 1 17 VAL n 1 18 LEU n 1 19 THR n 1 20 SER n 1 21 THR n 1 22 CYS n 1 23 GLU n 1 24 ARG n 1 25 THR n 1 26 ASN n 1 27 GLY n 1 28 GLY n 1 29 TYR n 1 30 ASN n 1 31 THR n 1 32 SER n 1 33 SER n 1 34 ILE n 1 35 ASP n 1 36 LEU n 1 37 ASN n 1 38 SER n 1 39 VAL n 1 40 ILE n 1 41 GLU n 1 42 ASN n 1 43 VAL n 1 44 ASP n 1 45 GLY n 1 46 SER n 1 47 LEU n 1 48 LYS n 1 49 TRP n 1 50 GLN n 1 51 PRO n 1 52 SER n 1 53 ASN n 1 54 PHE n 1 55 ILE n 1 56 GLU n 1 57 THR n 1 58 CYS n 1 59 ARG n 1 60 ASN n 1 61 THR n 1 62 GLN n 1 63 LEU n 1 64 ALA n 1 65 GLY n 1 66 SER n 1 67 SER n 1 68 GLU n 1 69 LEU n 1 70 ALA n 1 71 ALA n 1 72 GLU n 1 73 CYS n 1 74 LYS n 1 75 THR n 1 76 ARG n 1 77 ALA n 1 78 GLN n 1 79 GLN n 1 80 PHE n 1 81 VAL n 1 82 SER n 1 83 THR n 1 84 LYS n 1 85 ILE n 1 86 ASN n 1 87 LEU n 1 88 ASP n 1 89 ASP n 1 90 HIS n 1 91 ILE n 1 92 ALA n 1 93 ASN n 1 94 ILE n 1 95 ASP n 1 96 GLY n 1 97 THR n 1 98 LEU n 1 99 LYS n 1 100 TYR n 1 101 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nostoc _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nostoc ellipsosporum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 45916 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CVN_NOSEL _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKTRAQQF VSTKINLDDHIANIDGTLKYE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P81180 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1M5J A 1 ? 101 ? P81180 1 ? 101 ? 1 101 2 1 1M5J B 1 ? 101 ? P81180 1 ? 101 ? 1 101 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA D-saccharide . BETA-D-MANNOSE ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN D-saccharide . ALPHA-D-MANNOSE ? 'C6 H12 O6' 180.156 NHE non-polymer . '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' 'N-CYCLOHEXYLTAURINE; CHES' 'C8 H17 N O3 S' 207.290 OPM saccharide . O1-PENTYL-MANNOSE ? 'C11 H22 O6' 250.289 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1M5J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.94 _exptl_crystal.density_Matthews 3.15 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10.3 _exptl_crystal_grow.pdbx_details '0.1M CHES, 1M NaCitrate, pH 10.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-09-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 1M5J _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 2.4 _reflns.number_obs 11728 _reflns.number_all 11728 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.B_iso_Wilson_estimate 44.6 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1M5J _refine.ls_number_reflns_obs 10965 _refine.ls_number_reflns_all 11728 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 19.94 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 94.2 _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.224 _refine.ls_R_factor_R_free 0.289 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 1119 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 48.6 _refine.aniso_B[1][1] 8.45 _refine.aniso_B[2][2] 8.45 _refine.aniso_B[3][3] -16.89 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.328943 _refine.solvent_model_param_bsol 38.2638 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1L5B' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1M5J _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.49 _refine_analyze.Luzzati_sigma_a_free 0.62 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1540 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 119 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1751 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 19.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.77 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.34 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.30 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.96 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.03 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 1428 _refine_ls_shell.R_factor_R_work 0.401 _refine_ls_shell.percent_reflns_obs 83.9 _refine_ls_shell.R_factor_R_free 0.438 _refine_ls_shell.R_factor_R_free_error 0.035 _refine_ls_shell.percent_reflns_R_free 9.8 _refine_ls_shell.number_reflns_R_free 156 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 3 CHE.PARAM ? 'X-RAY DIFFRACTION' 4 ION.PARAM ? 'X-RAY DIFFRACTION' 5 CARBOHYDRATE.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1M5J _struct.title 'CRYSTAL STRUCTURE OF CYANOVIRIN-N COMPLEXED TO A SYNTHETIC HEXAMANNOSIDE' _struct.pdbx_descriptor Cyanovirin-N _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1M5J _struct_keywords.pdbx_keywords 'ANTIVIRAL PROTEIN' _struct_keywords.text 'CYANOVIRIN-N, HIV-INACTIVATING, DOMAIN-SWAPPING, GP120, MAN-9, OLIGOSACCHARIDE, ANTIVIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 6 ? N N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 3 ? GLN A 6 ? LYS A 3 GLN A 6 5 ? 4 HELX_P HELX_P2 2 ASN A 53 ? THR A 57 ? ASN A 53 THR A 57 1 ? 5 HELX_P HELX_P3 3 LYS B 3 ? GLN B 6 ? LYS B 3 GLN B 6 5 ? 4 HELX_P HELX_P4 4 ASN B 53 ? THR B 57 ? ASN B 53 THR B 57 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 8 A CYS 22 1_555 ? ? ? ? ? ? ? 2.029 ? disulf2 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 73 SG ? ? A CYS 58 A CYS 73 1_555 ? ? ? ? ? ? ? 2.030 ? disulf3 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 22 SG ? ? B CYS 8 B CYS 22 1_555 ? ? ? ? ? ? ? 2.025 ? disulf4 disulf ? ? B CYS 58 SG ? ? ? 1_555 B CYS 73 SG ? ? B CYS 58 B CYS 73 1_555 ? ? ? ? ? ? ? 2.031 ? covale1 covale ? ? C OPM . O3 ? ? ? 1_555 D BMA . C1 ? ? A OPM 503 A BMA 504 1_555 ? ? ? ? ? ? ? 1.396 ? covale2 covale ? ? C OPM . O6 ? ? ? 1_555 F BMA . C1 ? ? A OPM 503 A BMA 507 1_555 ? ? ? ? ? ? ? 1.409 ? covale3 covale ? ? D BMA . O2 ? ? ? 1_555 E MAN . C1 ? ? A BMA 504 A MAN 505 1_555 ? ? ? ? ? ? ? 1.404 ? covale4 covale ? ? F BMA . O3 ? ? ? 1_555 G BMA . C1 ? ? A BMA 507 A BMA 508 1_555 ? ? ? ? ? ? ? 1.412 ? covale5 covale ? ? F BMA . O6 ? ? ? 1_555 H MAN . C1 ? ? A BMA 507 A MAN 510 1_555 ? ? ? ? ? ? ? 1.407 ? covale6 covale ? ? J MAN . O3 ? ? ? 1_555 K MAN . C1 ? ? B MAN 603 B MAN 604 1_555 ? ? ? ? ? ? ? 1.406 ? covale7 covale ? ? K MAN . O2 ? ? ? 1_555 L MAN . C1 ? ? B MAN 604 B MAN 605 1_555 ? ? ? ? ? ? ? 1.394 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 3 ? D ? 2 ? E ? 3 ? F ? 2 ? G ? 3 ? H ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel H 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 8 ? GLN A 14 ? CYS A 8 GLN A 14 A 2 VAL A 17 ? GLU A 23 ? VAL A 17 GLU A 23 A 3 TYR A 29 ? ASP A 35 ? TYR A 29 ASP A 35 B 1 ILE A 40 ? VAL A 43 ? ILE A 40 VAL A 43 B 2 SER A 46 ? TRP A 49 ? SER A 46 TRP A 49 C 1 CYS A 58 ? ALA A 64 ? CYS A 58 ALA A 64 C 2 GLU A 68 ? LYS A 74 ? GLU A 68 LYS A 74 C 3 PHE A 80 ? ASN A 86 ? PHE A 80 ASN A 86 D 1 ILE A 91 ? ASN A 93 ? ILE A 91 ASN A 93 D 2 LEU A 98 ? TYR A 100 ? LEU A 98 TYR A 100 E 1 CYS B 8 ? GLN B 14 ? CYS B 8 GLN B 14 E 2 VAL B 17 ? GLU B 23 ? VAL B 17 GLU B 23 E 3 TYR B 29 ? ASP B 35 ? TYR B 29 ASP B 35 F 1 ILE B 40 ? VAL B 43 ? ILE B 40 VAL B 43 F 2 SER B 46 ? TRP B 49 ? SER B 46 TRP B 49 G 1 CYS B 58 ? ALA B 64 ? CYS B 58 ALA B 64 G 2 GLU B 68 ? LYS B 74 ? GLU B 68 LYS B 74 G 3 PHE B 80 ? ASN B 86 ? PHE B 80 ASN B 86 H 1 ILE B 91 ? ILE B 94 ? ILE B 91 ILE B 94 H 2 THR B 97 ? TYR B 100 ? THR B 97 TYR B 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 9 ? N TYR A 9 O THR A 21 ? O THR A 21 A 2 3 N CYS A 22 ? N CYS A 22 O ASN A 30 ? O ASN A 30 B 1 2 N VAL A 43 ? N VAL A 43 O SER A 46 ? O SER A 46 C 1 2 N GLN A 62 ? N GLN A 62 O ALA A 70 ? O ALA A 70 C 2 3 N ALA A 71 ? N ALA A 71 O THR A 83 ? O THR A 83 D 1 2 N ALA A 92 ? N ALA A 92 O LYS A 99 ? O LYS A 99 E 1 2 N ALA B 12 ? N ALA B 12 O THR B 19 ? O THR B 19 E 2 3 N CYS B 22 ? N CYS B 22 O ASN B 30 ? O ASN B 30 F 1 2 N GLU B 41 ? N GLU B 41 O LYS B 48 ? O LYS B 48 G 1 2 N GLN B 62 ? N GLN B 62 O ALA B 70 ? O ALA B 70 G 2 3 N CYS B 73 ? N CYS B 73 O VAL B 81 ? O VAL B 81 H 1 2 N ALA B 92 ? N ALA B 92 O LYS B 99 ? O LYS B 99 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE OPM A 503' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE BMA A 504' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE MAN A 505' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE BMA A 507' AC5 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE BMA A 508' AC6 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MAN A 510' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MAN B 603' AC8 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MAN B 604' AC9 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MAN B 605' BC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE NHE A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 THR A 25 ? THR A 25 . ? 1_555 ? 2 AC1 7 BMA D . ? BMA A 504 . ? 1_555 ? 3 AC1 7 MAN E . ? MAN A 505 . ? 1_555 ? 4 AC1 7 BMA F . ? BMA A 507 . ? 1_555 ? 5 AC1 7 BMA G . ? BMA A 508 . ? 1_555 ? 6 AC1 7 MAN H . ? MAN A 510 . ? 1_555 ? 7 AC1 7 HOH M . ? HOH A 549 . ? 1_555 ? 8 AC2 9 GLU A 23 ? GLU A 23 . ? 1_555 ? 9 AC2 9 ARG A 24 ? ARG A 24 . ? 1_555 ? 10 AC2 9 THR A 25 ? THR A 25 . ? 1_555 ? 11 AC2 9 OPM C . ? OPM A 503 . ? 1_555 ? 12 AC2 9 MAN E . ? MAN A 505 . ? 1_555 ? 13 AC2 9 ASN B 93 ? ASN B 93 . ? 1_555 ? 14 AC2 9 ILE B 94 ? ILE B 94 . ? 1_555 ? 15 AC2 9 ASP B 95 ? ASP B 95 . ? 1_555 ? 16 AC2 9 GLY B 96 ? GLY B 96 . ? 1_555 ? 17 AC3 8 LYS A 3 ? LYS A 3 . ? 1_555 ? 18 AC3 8 PHE A 4 ? PHE A 4 . ? 1_555 ? 19 AC3 8 GLN A 6 ? GLN A 6 . ? 1_555 ? 20 AC3 8 THR A 7 ? THR A 7 . ? 1_555 ? 21 AC3 8 OPM C . ? OPM A 503 . ? 1_555 ? 22 AC3 8 BMA D . ? BMA A 504 . ? 1_555 ? 23 AC3 8 ALA B 92 ? ALA B 92 . ? 1_555 ? 24 AC3 8 ASN B 93 ? ASN B 93 . ? 1_555 ? 25 AC4 3 OPM C . ? OPM A 503 . ? 1_555 ? 26 AC4 3 BMA G . ? BMA A 508 . ? 1_555 ? 27 AC4 3 MAN H . ? MAN A 510 . ? 1_555 ? 28 AC5 7 GLN A 14 ? GLN A 14 . ? 6_466 ? 29 AC5 7 GLY A 15 ? GLY A 15 . ? 6_466 ? 30 AC5 7 OPM C . ? OPM A 503 . ? 1_555 ? 31 AC5 7 BMA F . ? BMA A 507 . ? 1_555 ? 32 AC5 7 ASN B 60 ? ASN B 60 . ? 6_466 ? 33 AC5 7 THR B 61 ? THR B 61 . ? 6_466 ? 34 AC5 7 HOH N . ? HOH B 613 . ? 6_466 ? 35 AC6 7 OPM C . ? OPM A 503 . ? 1_555 ? 36 AC6 7 BMA F . ? BMA A 507 . ? 1_555 ? 37 AC6 7 ILE B 55 ? ILE B 55 . ? 6_466 ? 38 AC6 7 CYS B 58 ? CYS B 58 . ? 6_466 ? 39 AC6 7 ARG B 59 ? ARG B 59 . ? 6_466 ? 40 AC6 7 HOH N . ? HOH B 614 . ? 6_466 ? 41 AC6 7 HOH N . ? HOH B 647 . ? 6_466 ? 42 AC7 2 MAN K . ? MAN B 604 . ? 1_555 ? 43 AC7 2 MAN L . ? MAN B 605 . ? 1_555 ? 44 AC8 7 ASN A 93 ? ASN A 93 . ? 1_555 ? 45 AC8 7 ASP A 95 ? ASP A 95 . ? 1_555 ? 46 AC8 7 THR B 7 ? THR B 7 . ? 1_555 ? 47 AC8 7 GLU B 23 ? GLU B 23 . ? 1_555 ? 48 AC8 7 THR B 25 ? THR B 25 . ? 1_555 ? 49 AC8 7 MAN J . ? MAN B 603 . ? 1_555 ? 50 AC8 7 MAN L . ? MAN B 605 . ? 1_555 ? 51 AC9 7 ASN A 93 ? ASN A 93 . ? 1_555 ? 52 AC9 7 GLY B 2 ? GLY B 2 . ? 1_555 ? 53 AC9 7 LYS B 3 ? LYS B 3 . ? 1_555 ? 54 AC9 7 GLN B 6 ? GLN B 6 . ? 1_555 ? 55 AC9 7 THR B 7 ? THR B 7 . ? 1_555 ? 56 AC9 7 MAN J . ? MAN B 603 . ? 1_555 ? 57 AC9 7 MAN K . ? MAN B 604 . ? 1_555 ? 58 BC1 10 LYS A 48 ? LYS A 48 . ? 8_666 ? 59 BC1 10 TRP A 49 ? TRP A 49 . ? 8_666 ? 60 BC1 10 ASN A 53 ? ASN A 53 . ? 1_555 ? 61 BC1 10 THR A 57 ? THR A 57 . ? 1_555 ? 62 BC1 10 LYS A 74 ? LYS A 74 . ? 1_555 ? 63 BC1 10 THR A 75 ? THR A 75 . ? 1_555 ? 64 BC1 10 ARG A 76 ? ARG A 76 . ? 1_555 ? 65 BC1 10 HOH M . ? HOH A 547 . ? 1_555 ? 66 BC1 10 ASN B 42 ? ASN B 42 . ? 1_555 ? 67 BC1 10 ASP B 44 ? ASP B 44 . ? 1_555 ? # _database_PDB_matrix.entry_id 1M5J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1M5J _atom_sites.fract_transf_matrix[1][1] 0.016299 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016299 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006777 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 CYS 73 73 73 CYS CYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 GLU 101 101 101 GLU GLU A . n B 1 1 LEU 1 1 1 LEU LEU B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 GLN 6 6 6 GLN GLN B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 CYS 8 8 8 CYS CYS B . n B 1 9 TYR 9 9 9 TYR TYR B . n B 1 10 ASN 10 10 10 ASN ASN B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 ALA 12 12 12 ALA ALA B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 GLN 14 14 14 GLN GLN B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 SER 20 20 20 SER SER B . n B 1 21 THR 21 21 21 THR THR B . n B 1 22 CYS 22 22 22 CYS CYS B . n B 1 23 GLU 23 23 23 GLU GLU B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 ASN 26 26 26 ASN ASN B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 TYR 29 29 29 TYR TYR B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 SER 32 32 32 SER SER B . n B 1 33 SER 33 33 33 SER SER B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 LEU 36 36 36 LEU LEU B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 SER 38 38 38 SER SER B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 ILE 40 40 40 ILE ILE B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 ASN 42 42 42 ASN ASN B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 ASP 44 44 44 ASP ASP B . n B 1 45 GLY 45 45 45 GLY GLY B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 TRP 49 49 49 TRP TRP B . n B 1 50 GLN 50 50 50 GLN GLN B . n B 1 51 PRO 51 51 51 PRO PRO B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 ASN 53 53 53 ASN ASN B . n B 1 54 PHE 54 54 54 PHE PHE B . n B 1 55 ILE 55 55 55 ILE ILE B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 CYS 58 58 58 CYS CYS B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 ASN 60 60 60 ASN ASN B . n B 1 61 THR 61 61 61 THR THR B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ALA 64 64 64 ALA ALA B . n B 1 65 GLY 65 65 65 GLY GLY B . n B 1 66 SER 66 66 66 SER SER B . n B 1 67 SER 67 67 67 SER SER B . n B 1 68 GLU 68 68 68 GLU GLU B . n B 1 69 LEU 69 69 69 LEU LEU B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 CYS 73 73 73 CYS CYS B . n B 1 74 LYS 74 74 74 LYS LYS B . n B 1 75 THR 75 75 75 THR THR B . n B 1 76 ARG 76 76 76 ARG ARG B . n B 1 77 ALA 77 77 77 ALA ALA B . n B 1 78 GLN 78 78 78 GLN GLN B . n B 1 79 GLN 79 79 79 GLN GLN B . n B 1 80 PHE 80 80 80 PHE PHE B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 SER 82 82 82 SER SER B . n B 1 83 THR 83 83 83 THR THR B . n B 1 84 LYS 84 84 84 LYS LYS B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 ASN 86 86 86 ASN ASN B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 ASP 88 88 88 ASP ASP B . n B 1 89 ASP 89 89 89 ASP ASP B . n B 1 90 HIS 90 90 90 HIS HIS B . n B 1 91 ILE 91 91 91 ILE ILE B . n B 1 92 ALA 92 92 92 ALA ALA B . n B 1 93 ASN 93 93 93 ASN ASN B . n B 1 94 ILE 94 94 94 ILE ILE B . n B 1 95 ASP 95 95 95 ASP ASP B . n B 1 96 GLY 96 96 96 GLY GLY B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 LEU 98 98 98 LEU LEU B . n B 1 99 LYS 99 99 99 LYS LYS B . n B 1 100 TYR 100 100 100 TYR TYR B . n B 1 101 GLU 101 101 101 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OPM 1 503 502 OPM PEN A . D 3 BMA 2 504 504 BMA MAN A . E 4 MAN 3 505 505 MAN MAN A . F 3 BMA 4 507 507 BMA MAN A . G 3 BMA 5 508 508 BMA MAN A . H 4 MAN 6 510 510 MAN MAN A . I 5 NHE 1 301 301 NHE CHE A . J 4 MAN 1 603 603 MAN MAN B . K 4 MAN 2 604 604 MAN MAN B . L 4 MAN 3 605 605 MAN MAN B . M 6 HOH 1 511 1 HOH HOH A . M 6 HOH 2 512 4 HOH HOH A . M 6 HOH 3 513 7 HOH HOH A . M 6 HOH 4 514 9 HOH HOH A . M 6 HOH 5 515 10 HOH HOH A . M 6 HOH 6 516 12 HOH HOH A . M 6 HOH 7 517 13 HOH HOH A . M 6 HOH 8 518 14 HOH HOH A . M 6 HOH 9 519 15 HOH HOH A . M 6 HOH 10 520 18 HOH HOH A . M 6 HOH 11 521 22 HOH HOH A . M 6 HOH 12 522 24 HOH HOH A . M 6 HOH 13 523 32 HOH HOH A . M 6 HOH 14 524 36 HOH HOH A . M 6 HOH 15 525 38 HOH HOH A . M 6 HOH 16 526 39 HOH HOH A . M 6 HOH 17 527 44 HOH HOH A . M 6 HOH 18 528 47 HOH HOH A . M 6 HOH 19 529 49 HOH HOH A . M 6 HOH 20 530 50 HOH HOH A . M 6 HOH 21 531 51 HOH HOH A . M 6 HOH 22 532 54 HOH HOH A . M 6 HOH 23 533 56 HOH HOH A . M 6 HOH 24 534 57 HOH HOH A . M 6 HOH 25 535 60 HOH HOH A . M 6 HOH 26 536 61 HOH HOH A . M 6 HOH 27 537 62 HOH HOH A . M 6 HOH 28 538 64 HOH HOH A . M 6 HOH 29 539 66 HOH HOH A . M 6 HOH 30 540 67 HOH HOH A . M 6 HOH 31 541 71 HOH HOH A . M 6 HOH 32 542 72 HOH HOH A . M 6 HOH 33 543 73 HOH HOH A . M 6 HOH 34 544 75 HOH HOH A . M 6 HOH 35 545 76 HOH HOH A . M 6 HOH 36 546 82 HOH HOH A . M 6 HOH 37 547 83 HOH HOH A . M 6 HOH 38 548 85 HOH HOH A . M 6 HOH 39 549 87 HOH HOH A . M 6 HOH 40 550 88 HOH HOH A . M 6 HOH 41 551 90 HOH HOH A . M 6 HOH 42 552 91 HOH HOH A . M 6 HOH 43 553 95 HOH HOH A . M 6 HOH 44 554 98 HOH HOH A . M 6 HOH 45 555 101 HOH HOH A . M 6 HOH 46 556 105 HOH HOH A . M 6 HOH 47 557 108 HOH HOH A . N 6 HOH 1 606 2 HOH HOH B . N 6 HOH 2 607 3 HOH HOH B . N 6 HOH 3 608 5 HOH HOH B . N 6 HOH 4 609 6 HOH HOH B . N 6 HOH 5 610 11 HOH HOH B . N 6 HOH 6 611 16 HOH HOH B . N 6 HOH 7 612 19 HOH HOH B . N 6 HOH 8 613 20 HOH HOH B . N 6 HOH 9 614 21 HOH HOH B . N 6 HOH 10 615 25 HOH HOH B . N 6 HOH 11 616 30 HOH HOH B . N 6 HOH 12 617 34 HOH HOH B . N 6 HOH 13 618 35 HOH HOH B . N 6 HOH 14 619 37 HOH HOH B . N 6 HOH 15 620 41 HOH HOH B . N 6 HOH 16 621 43 HOH HOH B . N 6 HOH 17 622 45 HOH HOH B . N 6 HOH 18 623 46 HOH HOH B . N 6 HOH 19 624 48 HOH HOH B . N 6 HOH 20 625 53 HOH HOH B . N 6 HOH 21 626 59 HOH HOH B . N 6 HOH 22 627 63 HOH HOH B . N 6 HOH 23 628 65 HOH HOH B . N 6 HOH 24 629 68 HOH HOH B . N 6 HOH 25 630 69 HOH HOH B . N 6 HOH 26 631 70 HOH HOH B . N 6 HOH 27 632 74 HOH HOH B . N 6 HOH 28 633 77 HOH HOH B . N 6 HOH 29 634 78 HOH HOH B . N 6 HOH 30 635 79 HOH HOH B . N 6 HOH 31 636 80 HOH HOH B . N 6 HOH 32 637 81 HOH HOH B . N 6 HOH 33 638 84 HOH HOH B . N 6 HOH 34 639 86 HOH HOH B . N 6 HOH 35 640 89 HOH HOH B . N 6 HOH 36 641 93 HOH HOH B . N 6 HOH 37 642 94 HOH HOH B . N 6 HOH 38 643 96 HOH HOH B . N 6 HOH 39 644 97 HOH HOH B . N 6 HOH 40 645 99 HOH HOH B . N 6 HOH 41 646 100 HOH HOH B . N 6 HOH 42 647 102 HOH HOH B . N 6 HOH 43 648 103 HOH HOH B . N 6 HOH 44 649 104 HOH HOH B . N 6 HOH 45 650 107 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9130 ? 1 MORE -10 ? 1 'SSA (A^2)' 10900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-09-18 2 'Structure model' 1 1 2009-05-05 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data collection' . ? 1 SCALEPACK 'data reduction' . ? 2 AMoRE 'model building' . ? 3 CNS refinement 1.0 ? 4 DENZO 'data reduction' . ? 5 SCALEPACK 'data scaling' . ? 6 AMoRE phasing . ? 7 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 527 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 527 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_666 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -38.31 -28.28 2 1 ASN A 26 ? ? -147.68 58.66 3 1 GLN A 78 ? ? 78.18 38.44 4 1 ILE A 94 ? ? -109.24 78.47 5 1 ALA B 71 ? ? -173.82 -174.53 6 1 GLN B 78 ? ? 62.57 68.50 7 1 HIS B 90 ? ? -142.56 -3.77 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id MAN _pdbx_validate_chiral.auth_seq_id 603 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 O1-PENTYL-MANNOSE OPM 3 BETA-D-MANNOSE BMA 4 ALPHA-D-MANNOSE MAN 5 '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' NHE 6 water HOH #