HEADER TRANSFERASE/DNA 10-JUL-02 1M5R TITLE TERNARY COMPLEX OF T4 PHAGE BGT WITH UDP AND A 13 MER DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3'; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3'; COMPND 7 CHAIN: E, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA BETA-GLUCOSYLTRANSFERASE; COMPND 11 CHAIN: A, B; COMPND 12 SYNONYM: BGT; COMPND 13 EC: 2.4.1.27; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 7 ORGANISM_TAXID: 10665; SOURCE 8 GENE: BGT; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PBSK KEYWDS PROTEIN-DNA COMPLEX, BASE-FLIPPING, ABASIC SITE, TRANSFERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.LARIVIERE,S.MORERA REVDAT 3 14-FEB-24 1M5R 1 REMARK LINK REVDAT 2 24-FEB-09 1M5R 1 VERSN REVDAT 1 11-DEC-02 1M5R 0 JRNL AUTH L.LARIVIERE,S.MORERA JRNL TITL A BASE-FLIPPING MECHANISM FOR THE T4 PHAGE JRNL TITL 2 BETA-GLUCOSYLTRANSFERASE AND IDENTIFICATION OF A TRANSITION JRNL TITL 3 STATE ANALOG JRNL REF J.MOL.BIOL. V. 324 483 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12445783 JRNL DOI 10.1016/S0022-2836(02)01091-4 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 83161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4209 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5738 REMARK 3 NUCLEIC ACID ATOMS : 1038 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.180 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83161 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JG6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, TERT-BUTANOL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.95000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DC E 26 C5' C4' O4' C3' O3' C2' C1' REMARK 480 DC E 26 N1 C2 O2 N3 C4 N4 C5 REMARK 480 DC E 26 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 266 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 13 -58.52 -137.89 REMARK 500 ASN A 14 -153.98 -147.13 REMARK 500 LEU A 103 51.17 -113.61 REMARK 500 ASN A 264 -61.98 -136.88 REMARK 500 ASP A 287 71.39 -151.99 REMARK 500 ILE B 13 -60.14 -142.41 REMARK 500 ASN B 14 -153.00 -141.96 REMARK 500 LEU B 103 54.73 -115.08 REMARK 500 ASN B 264 -53.03 -139.04 REMARK 500 ASP B 287 72.86 -150.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JG6 RELATED DB: PDB REMARK 900 T4 PHAGE BGT IN COMPLEX WITH UDP REMARK 900 RELATED ID: 1IXY RELATED DB: PDB REMARK 900 1IXY CONTAINS THE SAME STRUCTRUE WITH MAGNESIUM ION BOUND TO THE REMARK 900 ACTIVE SITE DBREF 1M5R A 1 351 UNP P04547 GSTB_BPT4 1 351 DBREF 1M5R B 1 351 UNP P04547 GSTB_BPT4 1 351 DBREF 1M5R C 1 13 PDB 1M5R 1M5R 1 13 DBREF 1M5R E 14 26 PDB 1M5R 1M5R 14 26 DBREF 1M5R D 1 13 PDB 1M5R 1M5R 1 13 DBREF 1M5R F 14 26 PDB 1M5R 1M5R 14 26 SEQRES 1 C 13 DG DA DT DA DC DT 3DR DA DG DA DT DA DG SEQRES 1 E 13 DC DT DA DT DC DT DG DA DG DT DA DT DC SEQRES 1 D 13 DG DA DT DA DC DT 3DR DA DG DA DT DA DG SEQRES 1 F 13 DC DT DA DT DC DT DG DA DG DT DA DT DC SEQRES 1 A 351 MET LYS ILE ALA ILE ILE ASN MET GLY ASN ASN VAL ILE SEQRES 2 A 351 ASN PHE LYS THR VAL PRO SER SER GLU THR ILE TYR LEU SEQRES 3 A 351 PHE LYS VAL ILE SER GLU MET GLY LEU ASN VAL ASP ILE SEQRES 4 A 351 ILE SER LEU LYS ASN GLY VAL TYR THR LYS SER PHE ASP SEQRES 5 A 351 GLU VAL ASP VAL ASN ASP TYR ASP ARG LEU ILE VAL VAL SEQRES 6 A 351 ASN SER SER ILE ASN PHE PHE GLY GLY LYS PRO ASN LEU SEQRES 7 A 351 ALA ILE LEU SER ALA GLN LYS PHE MET ALA LYS TYR LYS SEQRES 8 A 351 SER LYS ILE TYR TYR LEU PHE THR ASP ILE ARG LEU PRO SEQRES 9 A 351 PHE SER GLN SER TRP PRO ASN VAL LYS ASN ARG PRO TRP SEQRES 10 A 351 ALA TYR LEU TYR THR GLU GLU GLU LEU LEU ILE LYS SER SEQRES 11 A 351 PRO ILE LYS VAL ILE SER GLN GLY ILE ASN LEU ASP ILE SEQRES 12 A 351 ALA LYS ALA ALA HIS LYS LYS VAL ASP ASN VAL ILE GLU SEQRES 13 A 351 PHE GLU TYR PHE PRO ILE GLU GLN TYR LYS ILE HIS MET SEQRES 14 A 351 ASN ASP PHE GLN LEU SER LYS PRO THR LYS LYS THR LEU SEQRES 15 A 351 ASP VAL ILE TYR GLY GLY SER PHE ARG SER GLY GLN ARG SEQRES 16 A 351 GLU SER LYS MET VAL GLU PHE LEU PHE ASP THR GLY LEU SEQRES 17 A 351 ASN ILE GLU PHE PHE GLY ASN ALA ARG GLU LYS GLN PHE SEQRES 18 A 351 LYS ASN PRO LYS TYR PRO TRP THR LYS ALA PRO VAL PHE SEQRES 19 A 351 THR GLY LYS ILE PRO MET ASN MET VAL SER GLU LYS ASN SEQRES 20 A 351 SER GLN ALA ILE ALA ALA LEU ILE ILE GLY ASP LYS ASN SEQRES 21 A 351 TYR ASN ASP ASN PHE ILE THR LEU ARG VAL TRP GLU THR SEQRES 22 A 351 MET ALA SER ASP ALA VAL MET LEU ILE ASP GLU GLU PHE SEQRES 23 A 351 ASP THR LYS HIS ARG ILE ILE ASN ASP ALA ARG PHE TYR SEQRES 24 A 351 VAL ASN ASN ARG ALA GLU LEU ILE ASP ARG VAL ASN GLU SEQRES 25 A 351 LEU LYS HIS SER ASP VAL LEU ARG LYS GLU MET LEU SER SEQRES 26 A 351 ILE GLN HIS ASP ILE LEU ASN LYS THR ARG ALA LYS LYS SEQRES 27 A 351 ALA GLU TRP GLN ASP ALA PHE LYS LYS ALA ILE ASP LEU SEQRES 1 B 351 MET LYS ILE ALA ILE ILE ASN MET GLY ASN ASN VAL ILE SEQRES 2 B 351 ASN PHE LYS THR VAL PRO SER SER GLU THR ILE TYR LEU SEQRES 3 B 351 PHE LYS VAL ILE SER GLU MET GLY LEU ASN VAL ASP ILE SEQRES 4 B 351 ILE SER LEU LYS ASN GLY VAL TYR THR LYS SER PHE ASP SEQRES 5 B 351 GLU VAL ASP VAL ASN ASP TYR ASP ARG LEU ILE VAL VAL SEQRES 6 B 351 ASN SER SER ILE ASN PHE PHE GLY GLY LYS PRO ASN LEU SEQRES 7 B 351 ALA ILE LEU SER ALA GLN LYS PHE MET ALA LYS TYR LYS SEQRES 8 B 351 SER LYS ILE TYR TYR LEU PHE THR ASP ILE ARG LEU PRO SEQRES 9 B 351 PHE SER GLN SER TRP PRO ASN VAL LYS ASN ARG PRO TRP SEQRES 10 B 351 ALA TYR LEU TYR THR GLU GLU GLU LEU LEU ILE LYS SER SEQRES 11 B 351 PRO ILE LYS VAL ILE SER GLN GLY ILE ASN LEU ASP ILE SEQRES 12 B 351 ALA LYS ALA ALA HIS LYS LYS VAL ASP ASN VAL ILE GLU SEQRES 13 B 351 PHE GLU TYR PHE PRO ILE GLU GLN TYR LYS ILE HIS MET SEQRES 14 B 351 ASN ASP PHE GLN LEU SER LYS PRO THR LYS LYS THR LEU SEQRES 15 B 351 ASP VAL ILE TYR GLY GLY SER PHE ARG SER GLY GLN ARG SEQRES 16 B 351 GLU SER LYS MET VAL GLU PHE LEU PHE ASP THR GLY LEU SEQRES 17 B 351 ASN ILE GLU PHE PHE GLY ASN ALA ARG GLU LYS GLN PHE SEQRES 18 B 351 LYS ASN PRO LYS TYR PRO TRP THR LYS ALA PRO VAL PHE SEQRES 19 B 351 THR GLY LYS ILE PRO MET ASN MET VAL SER GLU LYS ASN SEQRES 20 B 351 SER GLN ALA ILE ALA ALA LEU ILE ILE GLY ASP LYS ASN SEQRES 21 B 351 TYR ASN ASP ASN PHE ILE THR LEU ARG VAL TRP GLU THR SEQRES 22 B 351 MET ALA SER ASP ALA VAL MET LEU ILE ASP GLU GLU PHE SEQRES 23 B 351 ASP THR LYS HIS ARG ILE ILE ASN ASP ALA ARG PHE TYR SEQRES 24 B 351 VAL ASN ASN ARG ALA GLU LEU ILE ASP ARG VAL ASN GLU SEQRES 25 B 351 LEU LYS HIS SER ASP VAL LEU ARG LYS GLU MET LEU SER SEQRES 26 B 351 ILE GLN HIS ASP ILE LEU ASN LYS THR ARG ALA LYS LYS SEQRES 27 B 351 ALA GLU TRP GLN ASP ALA PHE LYS LYS ALA ILE ASP LEU HET 3DR C 7 11 HET 3DR D 7 11 HET UDP A 400 25 HET TRS A 500 8 HET TRS A 501 8 HET MPD A 502 8 HET UDP B 401 25 HET TRS B 501 8 HET TRS B 502 8 HET TRS B 503 8 HET MPD B 504 8 HET MPD B 505 8 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN TRS TRIS BUFFER FORMUL 1 3DR 2(C5 H11 O6 P) FORMUL 7 UDP 2(C9 H14 N2 O12 P2) FORMUL 8 TRS 5(C4 H12 N O3 1+) FORMUL 10 MPD 3(C6 H14 O2) FORMUL 17 HOH *772(H2 O) HELIX 1 1 THR A 17 GLU A 32 1 16 HELIX 2 2 ASP A 52 VAL A 54 5 3 HELIX 3 3 ASP A 55 TYR A 59 5 5 HELIX 4 4 PHE A 71 LYS A 75 5 5 HELIX 5 5 ASN A 77 TYR A 90 1 14 HELIX 6 6 SER A 108 LYS A 113 1 6 HELIX 7 7 ASN A 114 TYR A 121 5 8 HELIX 8 8 THR A 122 LEU A 127 1 6 HELIX 9 9 ASN A 140 HIS A 148 1 9 HELIX 10 10 PRO A 161 GLU A 163 5 3 HELIX 11 11 GLN A 164 MET A 169 1 6 HELIX 12 12 PHE A 190 GLN A 194 5 5 HELIX 13 13 ARG A 195 PHE A 204 1 10 HELIX 14 14 ARG A 217 PHE A 221 5 5 HELIX 15 15 PRO A 239 ASN A 241 5 3 HELIX 16 16 MET A 242 SER A 248 1 7 HELIX 17 17 ASP A 258 ASN A 262 5 5 HELIX 18 18 THR A 267 ALA A 275 1 9 HELIX 19 19 GLU A 285 THR A 288 5 4 HELIX 20 20 ASP A 295 ARG A 297 5 3 HELIX 21 21 ASN A 302 SER A 316 1 15 HELIX 22 22 SER A 316 ALA A 336 1 21 HELIX 23 23 LYS A 337 ILE A 349 1 13 HELIX 24 24 THR B 17 GLU B 32 1 16 HELIX 25 25 ASP B 52 VAL B 54 5 3 HELIX 26 26 ASP B 55 TYR B 59 5 5 HELIX 27 27 PHE B 71 LYS B 75 5 5 HELIX 28 28 ASN B 77 TYR B 90 1 14 HELIX 29 29 SER B 108 LYS B 113 1 6 HELIX 30 30 TRP B 117 TYR B 121 5 5 HELIX 31 31 THR B 122 LEU B 127 1 6 HELIX 32 32 ASN B 140 HIS B 148 1 9 HELIX 33 33 PRO B 161 GLU B 163 5 3 HELIX 34 34 GLN B 164 MET B 169 1 6 HELIX 35 35 PHE B 190 GLN B 194 5 5 HELIX 36 36 ARG B 195 PHE B 204 1 10 HELIX 37 37 ARG B 217 PHE B 221 5 5 HELIX 38 38 PRO B 239 ASN B 241 5 3 HELIX 39 39 MET B 242 SER B 248 1 7 HELIX 40 40 ASP B 258 ASN B 262 5 5 HELIX 41 41 THR B 267 ALA B 275 1 9 HELIX 42 42 GLU B 285 ASP B 287 5 3 HELIX 43 43 ASP B 295 ARG B 297 5 3 HELIX 44 44 ASN B 302 SER B 316 1 15 HELIX 45 45 SER B 316 ALA B 336 1 21 HELIX 46 46 LYS B 337 ILE B 349 1 13 SHEET 1 A 7 THR A 48 SER A 50 0 SHEET 2 A 7 ASN A 36 SER A 41 1 N SER A 41 O LYS A 49 SHEET 3 A 7 LYS A 2 ASN A 7 1 N ILE A 3 O ASN A 36 SHEET 4 A 7 ARG A 61 VAL A 65 1 O ILE A 63 N ALA A 4 SHEET 5 A 7 ILE A 94 PHE A 98 1 O TYR A 95 N VAL A 64 SHEET 6 A 7 ILE A 132 SER A 136 1 O LYS A 133 N ILE A 94 SHEET 7 A 7 VAL A 154 TYR A 159 1 O GLU A 156 N VAL A 134 SHEET 1 B 6 VAL A 233 THR A 235 0 SHEET 2 B 6 ILE A 210 PHE A 213 1 N PHE A 212 O VAL A 233 SHEET 3 B 6 LEU A 182 GLY A 187 1 N VAL A 184 O GLU A 211 SHEET 4 B 6 ALA A 250 ILE A 255 1 O ILE A 251 N LEU A 182 SHEET 5 B 6 VAL A 279 ASP A 283 1 O ASP A 283 N ILE A 255 SHEET 6 B 6 TYR A 299 VAL A 300 1 O VAL A 300 N ILE A 282 SHEET 1 C 7 THR B 48 SER B 50 0 SHEET 2 C 7 ASN B 36 SER B 41 1 N SER B 41 O LYS B 49 SHEET 3 C 7 LYS B 2 ASN B 7 1 N ILE B 3 O ASN B 36 SHEET 4 C 7 ARG B 61 VAL B 65 1 O ILE B 63 N ALA B 4 SHEET 5 C 7 ILE B 94 PHE B 98 1 O TYR B 95 N VAL B 64 SHEET 6 C 7 ILE B 132 SER B 136 1 O LYS B 133 N ILE B 94 SHEET 7 C 7 VAL B 154 TYR B 159 1 O GLU B 156 N VAL B 134 SHEET 1 D 6 VAL B 233 THR B 235 0 SHEET 2 D 6 ILE B 210 PHE B 213 1 N PHE B 212 O VAL B 233 SHEET 3 D 6 LEU B 182 GLY B 187 1 N TYR B 186 O PHE B 213 SHEET 4 D 6 ALA B 250 ILE B 255 1 O LEU B 254 N ILE B 185 SHEET 5 D 6 VAL B 279 ASP B 283 1 O LEU B 281 N ALA B 253 SHEET 6 D 6 TYR B 299 VAL B 300 1 O VAL B 300 N ILE B 282 LINK O3' DT C 6 P 3DR C 7 1555 1555 1.60 LINK O3' 3DR C 7 P DA C 8 1555 1555 1.61 LINK O3' DT D 6 P 3DR D 7 1555 1555 1.61 LINK O3' 3DR D 7 P DA D 8 1555 1555 1.61 SITE 1 AC1 21 VAL A 18 GLY A 188 SER A 189 ARG A 191 SITE 2 AC1 21 ARG A 195 PHE A 213 GLY A 214 LYS A 237 SITE 3 AC1 21 ILE A 238 MET A 240 VAL A 243 TYR A 261 SITE 4 AC1 21 ARG A 269 GLU A 272 TRS A 500 HOH A1009 SITE 5 AC1 21 HOH A1019 HOH A1021 HOH A1023 HOH A1074 SITE 6 AC1 21 HOH A1089 SITE 1 AC2 9 GLU A 22 THR A 99 ASP A 100 ARG A 191 SITE 2 AC2 9 UDP A 400 HOH A1008 HOH A1021 HOH A1172 SITE 3 AC2 9 HOH A1199 SITE 1 AC3 22 VAL B 18 GLY B 188 SER B 189 ARG B 191 SITE 2 AC3 22 ARG B 195 PHE B 213 GLY B 214 LYS B 237 SITE 3 AC3 22 ILE B 238 MET B 240 VAL B 243 TYR B 261 SITE 4 AC3 22 LEU B 268 ARG B 269 GLU B 272 TRS B 501 SITE 5 AC3 22 HOH B2001 HOH B2002 HOH B2003 HOH B2004 SITE 6 AC3 22 HOH B2038 HOH B2081 SITE 1 AC4 8 GLU B 22 THR B 99 ASP B 100 UDP B 401 SITE 2 AC4 8 HOH B2004 HOH B2036 HOH B2115 HOH B2217 SITE 1 AC5 7 GLU A 340 TRP A 341 ALA A 344 HOH A1121 SITE 2 AC5 7 HOH A1122 HOH A1260 HOH A1380 SITE 1 AC6 8 ASN B 57 TYR B 59 TYR B 90 LYS B 91 SITE 2 AC6 8 SER B 92 HOH B2012 HOH B2026 HOH B2195 SITE 1 AC7 2 MET B 242 GLN B 249 SITE 1 AC8 5 ARG A 291 THR A 334 HOH A1078 HOH A1127 SITE 2 AC8 5 HOH A1252 SITE 1 AC9 4 LYS B 180 LEU B 182 ASP B 183 ASN B 209 SITE 1 BC1 8 GLY A 45 VAL A 46 TYR B 159 ARG B 291 SITE 2 BC1 8 HOH B2205 HOH B2288 HOH B2301 HOH B2378 CRYST1 83.000 55.900 99.500 90.00 91.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012048 0.000000 0.000231 0.00000 SCALE2 0.000000 0.017889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010052 0.00000