data_1M69 # _entry.id 1M69 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1M69 pdb_00001m69 10.2210/pdb1m69/pdb NDB DD0051 ? ? RCSB RCSB016650 ? ? WWPDB D_1000016650 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-08-19 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-08 5 'Structure model' 1 4 2017-10-11 6 'Structure model' 1 5 2024-02-14 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' diffrn_source 6 6 'Structure model' struct_site 7 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'There are chirality errors in the coordinates.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1M69 _pdbx_database_status.recvd_initial_deposition_date 2002-07-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name NDB _pdbx_database_related.db_id ddf073 _pdbx_database_related.details 'Model used for Mol. Replacement solution' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Teixeira, S.C.M.' 1 'Thorpe, J.H.' 2 'Todd, A.K.' 3 'Cardin, C.J.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Heavy Going: the Atomic Resolution Structure of a Topoisomerase II Poison Intercalating into DNA in Multiple Orientations Also Reveals a Multiple Adenine-Thymine Hydrogen Bonding Pattern ; 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Reading University: Single Crystal X-Ray Diffraction Studies of DNA and DNA-drug complexes' Thesis ? ? ? 1999 ? ? ? ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Teixeira, S.C.M.' 1 ? primary 'Thorpe, J.H.' 2 ? primary 'Todd, A.K.' 3 ? primary 'Cardin, C.J.' 4 ? 1 'Todd, A.K.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 1 ? ? ? ? 2 non-polymer syn '5-BROMO-N[2-(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4-CARBOXAMIDE' 389.290 2 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-BROMO-N[2-(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4-CARBOXAMIDE' DAX 3 SPERMINE SPM 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DAX non-polymer . '5-BROMO-N[2-(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4-CARBOXAMIDE' ? 'C18 H21 Br N4 O 2' 389.290 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1001 1001 DC C A . n A 1 2 DG 2 1002 1002 DG G A . n A 1 3 DT 3 1003 1003 DT T A . n A 1 4 DA 4 1004 1004 DA A A . n A 1 5 DC 5 1005 1005 DC C A . n A 1 6 DG 6 1006 1006 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DAX 1 2000 2000 DAX DAX A . C 2 DAX 1 3000 3000 DAX DAX A . D 3 SPM 1 4000 4000 SPM SPM A . E 4 HOH 1 5001 5001 HOH HOH A . E 4 HOH 2 5002 5002 HOH HOH A . E 4 HOH 3 5003 5003 HOH HOH A . E 4 HOH 4 5004 5004 HOH HOH A . E 4 HOH 5 5005 5005 HOH HOH A . E 4 HOH 6 5006 5006 HOH HOH A . E 4 HOH 7 5007 5007 HOH HOH A . E 4 HOH 8 5008 5008 HOH HOH A . E 4 HOH 9 5009 5009 HOH HOH A . E 4 HOH 10 5010 5010 HOH HOH A . E 4 HOH 11 5011 5011 HOH HOH A . E 4 HOH 12 5012 5012 HOH HOH A . E 4 HOH 13 5013 5013 HOH HOH A . E 4 HOH 14 5014 5014 HOH HOH A . E 4 HOH 15 5015 5015 HOH HOH A . E 4 HOH 16 5016 5016 HOH HOH A . E 4 HOH 17 5017 5017 HOH HOH A . E 4 HOH 18 5018 5018 HOH HOH A . E 4 HOH 19 5019 5019 HOH HOH A . E 4 HOH 20 5020 5020 HOH HOH A . E 4 HOH 21 5021 5021 HOH HOH A . E 4 HOH 22 5022 5022 HOH HOH A . E 4 HOH 23 5023 5023 HOH HOH A . E 4 HOH 24 5024 5024 HOH HOH A . E 4 HOH 25 5025 5025 HOH HOH A . E 4 HOH 26 5026 5026 HOH HOH A . E 4 HOH 27 5027 5027 HOH HOH A . E 4 HOH 28 5028 5028 HOH HOH A . E 4 HOH 29 5029 5029 HOH HOH A . E 4 HOH 30 5030 5030 HOH HOH A . E 4 HOH 31 5031 5031 HOH HOH A . E 4 HOH 32 5032 5032 HOH HOH A . E 4 HOH 33 5033 5033 HOH HOH A . E 4 HOH 34 5037 5037 HOH HOH A . E 4 HOH 35 5039 5039 HOH HOH A . E 4 HOH 36 5042 5042 HOH HOH A . E 4 HOH 37 5043 5043 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A SPM 4000 ? C8 ? D SPM 1 C8 2 1 N 1 A SPM 4000 ? C9 ? D SPM 1 C9 3 1 N 1 A SPM 4000 ? N10 ? D SPM 1 N10 4 1 N 1 A SPM 4000 ? C11 ? D SPM 1 C11 5 1 N 1 A SPM 4000 ? C12 ? D SPM 1 C12 6 1 N 1 A SPM 4000 ? C13 ? D SPM 1 C13 7 1 N 1 A SPM 4000 ? N14 ? D SPM 1 N14 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 XDS 'data reduction' . ? 2 SHELX 'model building' . ? 3 SHELXL-97 refinement . ? 4 XDS 'data scaling' . ? 5 SHELX phasing . ? 6 # _cell.entry_id 1M69 _cell.length_a 30.186 _cell.length_b 30.186 _cell.length_c 39.443 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M69 _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 # _exptl.entry_id 1M69 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 55.21 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'Ammonium acetate, magnesium acetate, sodium cacodylate, PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 290.15K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Ammonium acetate' ? ? ? 1 2 1 'magnesium acetate' ? ? ? 1 3 1 'sodium cacodylate' ? ? ? 1 4 1 'PEG 8000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-12-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Triangular monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8068 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8068 # _reflns.entry_id 1M69 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 4 _reflns.d_resolution_low 10 _reflns.d_resolution_high 1.1 _reflns.number_obs 8308 _reflns.number_all ? _reflns.percent_possible_obs 94.72 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.1 _reflns_shell.d_res_low 1.15 _reflns_shell.percent_possible_all 95.79 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1M69 _refine.ls_number_reflns_obs 7350 _refine.ls_number_reflns_all 7900 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.10 _refine.ls_percent_reflns_obs 94.8 _refine.ls_R_factor_obs 0.1325 _refine.ls_R_factor_all 0.1325 _refine.ls_R_factor_R_work 0.1325 _refine.ls_R_factor_R_free 0.1864 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 408 _refine.ls_number_parameters 2113 _refine.ls_number_restraints 3689 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?' _refine.pdbx_starting_model 'ddf073 structure, with corrected sequence' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1M69 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 7 _refine_analyze.occupancy_sum_hydrogen 81.00 _refine_analyze.occupancy_sum_non_hydrogen 190.25 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 212 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.037 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.070 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0028 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.046 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.1 _refine_ls_shell.d_res_low 1.15 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.177 _refine_ls_shell.percent_reflns_obs 95.79 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_refine.entry_id 1M69 _pdbx_refine.R_factor_all_no_cutoff 0.1587 _pdbx_refine.R_factor_obs_no_cutoff 0.1572 _pdbx_refine.free_R_factor_no_cutoff 0.2102 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.2 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 408 _pdbx_refine.R_factor_all_4sig_cutoff 0.1295 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1295 _pdbx_refine.free_R_factor_4sig_cutoff 0.1833 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 371 _pdbx_refine.number_reflns_obs_4sig_cutoff 7350 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1M69 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 1M69 _struct.title 'Atomic Resolution Structure of 5Br-9amino-DACA with d[CGTACG]2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1M69 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'atomic resolution, adenine-thymine disorder, topoisomerase II poison, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1M69 _struct_ref.pdbx_db_accession 1M69 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1M69 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1M69 _struct_ref_seq.db_align_beg 1001 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1006 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1006 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 30.1860000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 A ? ? 1_555 A DA 4 N1 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 A ? ? 1_555 A DA 4 N6 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 A ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 A ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DAX 2000 ? 7 'BINDING SITE FOR RESIDUE DAX A 2000' AC2 Software A DAX 3000 ? 13 'BINDING SITE FOR RESIDUE DAX A 3000' AC3 Software A SPM 4000 ? 5 'BINDING SITE FOR RESIDUE SPM A 4000' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DC A 1 ? DC A 1001 . ? 1_445 ? 2 AC1 7 DC A 1 ? DC A 1001 . ? 4_655 ? 3 AC1 7 DG A 6 ? DG A 1006 . ? 4_545 ? 4 AC1 7 DG A 6 ? DG A 1006 . ? 1_555 ? 5 AC1 7 HOH E . ? HOH A 5022 . ? 4_545 ? 6 AC1 7 HOH E . ? HOH A 5022 . ? 1_555 ? 7 AC1 7 HOH E . ? HOH A 5024 . ? 1_555 ? 8 AC2 13 DC A 1 ? DC A 1001 . ? 4_655 ? 9 AC2 13 DG A 2 ? DG A 1002 . ? 4_655 ? 10 AC2 13 DG A 2 ? DG A 1002 . ? 6_544 ? 11 AC2 13 DA A 4 ? DA A 1004 . ? 5_555 ? 12 AC2 13 DC A 5 ? DC A 1005 . ? 1_555 ? 13 AC2 13 DG A 6 ? DG A 1006 . ? 1_555 ? 14 AC2 13 SPM D . ? SPM A 4000 . ? 4_655 ? 15 AC2 13 HOH E . ? HOH A 5012 . ? 5_555 ? 16 AC2 13 HOH E . ? HOH A 5018 . ? 6_544 ? 17 AC2 13 HOH E . ? HOH A 5023 . ? 1_555 ? 18 AC2 13 HOH E . ? HOH A 5024 . ? 4_545 ? 19 AC2 13 HOH E . ? HOH A 5025 . ? 1_555 ? 20 AC2 13 HOH E . ? HOH A 5042 . ? 1_555 ? 21 AC3 5 DG A 2 ? DG A 1002 . ? 1_555 ? 22 AC3 5 DT A 3 ? DT A 1003 . ? 1_555 ? 23 AC3 5 DAX C . ? DAX A 3000 . ? 4_655 ? 24 AC3 5 HOH E . ? HOH A 5015 . ? 1_555 ? 25 AC3 5 HOH E . ? HOH A 5039 . ? 4_655 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 HD82 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DAX _pdbx_validate_close_contact.auth_seq_id_1 3000 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 D _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 5023 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.51 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 HD73 A DAX 3000 ? D 1_555 H32 A SPM 4000 ? ? 4_655 1.23 2 1 N7 A DG 1002 ? ? 1_555 HD83 A DAX 3000 ? D 4_655 1.55 3 1 C7 A SPM 4000 ? ? 1_555 C7 A SPM 4000 ? ? 4_655 1.59 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 1.488 1.420 0.068 0.011 N 2 1 N1 A DC 1001 ? ? C6 A DC 1001 ? ? 1.305 1.367 -0.062 0.006 N 3 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.501 1.420 0.081 0.011 N 4 1 "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? A 1.603 1.512 0.091 0.007 N 5 1 "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? B 1.439 1.509 -0.070 0.011 N 6 1 "C3'" A DT 1003 ? B "C2'" A DT 1003 ? B 1.464 1.516 -0.052 0.008 N 7 1 "C1'" A DT 1003 ? B N1 A DT 1003 ? B 1.332 1.468 -0.136 0.014 N 8 1 "C5'" A DA 1004 ? A "C4'" A DA 1004 ? ? 1.577 1.512 0.065 0.007 N 9 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? 1.525 1.420 0.105 0.011 N 10 1 "O4'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 1.378 1.446 -0.068 0.010 N 11 1 "O3'" A DA 1004 ? ? "C3'" A DA 1004 ? ? 1.367 1.419 -0.052 0.006 N 12 1 "C1'" A DA 1004 ? ? N9 A DA 1004 ? ? 1.379 1.468 -0.089 0.014 N 13 1 C6 A DA 1004 ? ? N1 A DA 1004 ? ? 1.393 1.351 0.042 0.007 N 14 1 N7 A DA 1004 ? ? C8 A DA 1004 ? ? 1.265 1.311 -0.046 0.007 N 15 1 "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? 1.590 1.529 0.061 0.010 N 16 1 "C3'" A DC 1005 ? ? "C2'" A DC 1005 ? ? 1.455 1.516 -0.061 0.008 N 17 1 P A DG 1006 ? ? "O5'" A DG 1006 ? ? 1.511 1.593 -0.082 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1001 ? ? "C1'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 123.32 114.30 9.02 1.40 N 2 1 C5 A DC 1001 ? ? C6 A DC 1001 ? ? N1 A DC 1001 ? ? 124.58 121.00 3.58 0.50 N 3 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? N9 A DG 1002 ? ? 99.10 108.00 -8.90 0.70 N 4 1 N3 A DG 1002 ? ? C4 A DG 1002 ? ? N9 A DG 1002 ? ? 130.10 126.00 4.10 0.60 N 5 1 "O5'" A DT 1003 ? ? "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? A 103.16 109.40 -6.24 0.80 N 6 1 "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? B "O4'" A DT 1003 ? B 119.74 109.80 9.94 1.10 N 7 1 "C1'" A DT 1003 ? B "O4'" A DT 1003 ? B "C4'" A DT 1003 ? B 100.15 110.10 -9.95 1.00 N 8 1 "C2'" A DT 1003 ? B "C3'" A DT 1003 ? B "O3'" A DT 1003 ? B 139.90 112.60 27.30 3.30 N 9 1 N1 A DT 1003 ? A "C1'" A DT 1003 ? A "C2'" A DT 1003 ? A 125.49 114.30 11.19 1.40 N 10 1 N1 A DT 1003 ? B "C1'" A DT 1003 ? B "C2'" A DT 1003 ? B 136.65 114.30 22.35 1.40 N 11 1 "O4'" A DT 1003 ? B "C1'" A DT 1003 ? B N1 A DT 1003 ? B 115.13 108.30 6.83 0.30 N 12 1 N1 A DT 1003 ? B C2 A DT 1003 ? B O2 A DT 1003 ? B 118.11 123.10 -4.99 0.80 N 13 1 N3 A DT 1003 ? A C2 A DT 1003 ? A O2 A DT 1003 ? A 129.39 122.30 7.09 0.60 N 14 1 N3 A DT 1003 ? B C2 A DT 1003 ? B O2 A DT 1003 ? B 129.30 122.30 7.00 0.60 N 15 1 N3 A DT 1003 ? A C4 A DT 1003 ? A O4 A DT 1003 ? A 115.49 119.90 -4.41 0.60 N 16 1 C6 A DT 1003 ? A C5 A DT 1003 ? A C7 A DT 1003 ? A 127.16 122.90 4.26 0.60 N 17 1 C6 A DT 1003 ? B N1 A DT 1003 ? B "C1'" A DT 1003 ? B 101.69 120.40 -18.71 1.50 N 18 1 C2 A DT 1003 ? B N1 A DT 1003 ? B "C1'" A DT 1003 ? B 133.14 118.20 14.94 1.60 N 19 1 "C3'" A DT 1003 ? B "O3'" A DT 1003 ? B P A DA 1004 ? B 129.43 119.70 9.73 1.20 Y 20 1 P A DA 1004 ? B "O5'" A DA 1004 ? B "C5'" A DA 1004 ? B 111.14 120.90 -9.76 1.60 N 21 1 "C5'" A DA 1004 ? B "C4'" A DA 1004 ? ? "O4'" A DA 1004 ? ? 116.62 109.80 6.82 1.10 N 22 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? N9 A DA 1004 ? ? 101.76 108.00 -6.24 0.70 N 23 1 C4 A DA 1004 ? ? C5 A DA 1004 ? ? C6 A DA 1004 ? ? 121.21 117.00 4.21 0.50 N 24 1 C5 A DA 1004 ? ? C6 A DA 1004 ? ? N1 A DA 1004 ? ? 111.64 117.70 -6.06 0.50 N 25 1 C5 A DA 1004 ? ? C6 A DA 1004 ? ? N6 A DA 1004 ? ? 128.82 123.70 5.12 0.80 N 26 1 "C3'" A DA 1004 ? ? "O3'" A DA 1004 ? ? P A DC 1005 ? ? 127.45 119.70 7.75 1.20 Y 27 1 "O4'" A DC 1005 ? ? "C1'" A DC 1005 ? ? N1 A DC 1005 ? ? 110.13 108.30 1.83 0.30 N 28 1 P A DG 1006 ? ? "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? 140.78 120.90 19.88 1.60 N 29 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? N9 A DG 1006 ? ? 99.71 108.00 -8.29 0.70 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C1'" _pdbx_validate_chiral.label_alt_id B _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id DT _pdbx_validate_chiral.auth_seq_id 1003 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DT _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 1003 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.086 _pdbx_validate_planes.type 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DAX C1 C Y N 37 DAX C2 C Y N 38 DAX C3 C Y N 39 DAX C4 C Y N 40 DAX C5 C Y N 41 DAX C6 C Y N 42 DAX C7 C Y N 43 DAX C8 C Y N 44 DAX C9 C Y N 45 DAX N9 N N N 46 DAX N10 N Y N 47 DAX C11 C Y N 48 DAX C12 C Y N 49 DAX C13 C Y N 50 DAX C14 C Y N 51 DAX CD1 C N N 52 DAX OD1 O N N 53 DAX ND1 N N N 54 DAX BR BR N N 55 DAX CD2 C N N 56 DAX CD3 C N N 57 DAX ND2 N N N 58 DAX CD7 C N N 59 DAX CD8 C N N 60 DAX H1 H N N 61 DAX H2 H N N 62 DAX H3 H N N 63 DAX H6 H N N 64 DAX H7 H N N 65 DAX H8 H N N 66 DAX H91 H N N 67 DAX H92 H N N 68 DAX H10 H N N 69 DAX HD1 H N N 70 DAX HD21 H N N 71 DAX HD22 H N N 72 DAX HD31 H N N 73 DAX HD32 H N N 74 DAX HD2 H N N 75 DAX HD71 H N N 76 DAX HD72 H N N 77 DAX HD73 H N N 78 DAX HD81 H N N 79 DAX HD82 H N N 80 DAX HD83 H N N 81 DC OP3 O N N 82 DC P P N N 83 DC OP1 O N N 84 DC OP2 O N N 85 DC "O5'" O N N 86 DC "C5'" C N N 87 DC "C4'" C N R 88 DC "O4'" O N N 89 DC "C3'" C N S 90 DC "O3'" O N N 91 DC "C2'" C N N 92 DC "C1'" C N R 93 DC N1 N N N 94 DC C2 C N N 95 DC O2 O N N 96 DC N3 N N N 97 DC C4 C N N 98 DC N4 N N N 99 DC C5 C N N 100 DC C6 C N N 101 DC HOP3 H N N 102 DC HOP2 H N N 103 DC "H5'" H N N 104 DC "H5''" H N N 105 DC "H4'" H N N 106 DC "H3'" H N N 107 DC "HO3'" H N N 108 DC "H2'" H N N 109 DC "H2''" H N N 110 DC "H1'" H N N 111 DC H41 H N N 112 DC H42 H N N 113 DC H5 H N N 114 DC H6 H N N 115 DG OP3 O N N 116 DG P P N N 117 DG OP1 O N N 118 DG OP2 O N N 119 DG "O5'" O N N 120 DG "C5'" C N N 121 DG "C4'" C N R 122 DG "O4'" O N N 123 DG "C3'" C N S 124 DG "O3'" O N N 125 DG "C2'" C N N 126 DG "C1'" C N R 127 DG N9 N Y N 128 DG C8 C Y N 129 DG N7 N Y N 130 DG C5 C Y N 131 DG C6 C N N 132 DG O6 O N N 133 DG N1 N N N 134 DG C2 C N N 135 DG N2 N N N 136 DG N3 N N N 137 DG C4 C Y N 138 DG HOP3 H N N 139 DG HOP2 H N N 140 DG "H5'" H N N 141 DG "H5''" H N N 142 DG "H4'" H N N 143 DG "H3'" H N N 144 DG "HO3'" H N N 145 DG "H2'" H N N 146 DG "H2''" H N N 147 DG "H1'" H N N 148 DG H8 H N N 149 DG H1 H N N 150 DG H21 H N N 151 DG H22 H N N 152 DT OP3 O N N 153 DT P P N N 154 DT OP1 O N N 155 DT OP2 O N N 156 DT "O5'" O N N 157 DT "C5'" C N N 158 DT "C4'" C N R 159 DT "O4'" O N N 160 DT "C3'" C N S 161 DT "O3'" O N N 162 DT "C2'" C N N 163 DT "C1'" C N R 164 DT N1 N N N 165 DT C2 C N N 166 DT O2 O N N 167 DT N3 N N N 168 DT C4 C N N 169 DT O4 O N N 170 DT C5 C N N 171 DT C7 C N N 172 DT C6 C N N 173 DT HOP3 H N N 174 DT HOP2 H N N 175 DT "H5'" H N N 176 DT "H5''" H N N 177 DT "H4'" H N N 178 DT "H3'" H N N 179 DT "HO3'" H N N 180 DT "H2'" H N N 181 DT "H2''" H N N 182 DT "H1'" H N N 183 DT H3 H N N 184 DT H71 H N N 185 DT H72 H N N 186 DT H73 H N N 187 DT H6 H N N 188 HOH O O N N 189 HOH H1 H N N 190 HOH H2 H N N 191 SPM N1 N N N 192 SPM C2 C N N 193 SPM C3 C N N 194 SPM C4 C N N 195 SPM N5 N N N 196 SPM C6 C N N 197 SPM C7 C N N 198 SPM C8 C N N 199 SPM C9 C N N 200 SPM N10 N N N 201 SPM C11 C N N 202 SPM C12 C N N 203 SPM C13 C N N 204 SPM N14 N N N 205 SPM HN11 H N N 206 SPM HN12 H N N 207 SPM H21 H N N 208 SPM H22 H N N 209 SPM H31 H N N 210 SPM H32 H N N 211 SPM H41 H N N 212 SPM H42 H N N 213 SPM HN5 H N N 214 SPM H61 H N N 215 SPM H62 H N N 216 SPM H71 H N N 217 SPM H72 H N N 218 SPM H81 H N N 219 SPM H82 H N N 220 SPM H91 H N N 221 SPM H92 H N N 222 SPM HN0 H N N 223 SPM H111 H N N 224 SPM H112 H N N 225 SPM H121 H N N 226 SPM H122 H N N 227 SPM H131 H N N 228 SPM H132 H N N 229 SPM HN41 H N N 230 SPM HN42 H N N 231 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DAX C1 C2 doub Y N 39 DAX C1 C11 sing Y N 40 DAX C1 H1 sing N N 41 DAX C2 C3 sing Y N 42 DAX C2 H2 sing N N 43 DAX C3 C4 doub Y N 44 DAX C3 H3 sing N N 45 DAX C4 C12 sing Y N 46 DAX C4 CD1 sing N N 47 DAX C5 C6 doub Y N 48 DAX C5 C14 sing Y N 49 DAX C5 BR sing N N 50 DAX C6 C7 sing Y N 51 DAX C6 H6 sing N N 52 DAX C7 C8 doub Y N 53 DAX C7 H7 sing N N 54 DAX C8 C13 sing Y N 55 DAX C8 H8 sing N N 56 DAX C9 N9 sing N N 57 DAX C9 C11 sing Y N 58 DAX C9 C13 doub Y N 59 DAX N9 H91 sing N N 60 DAX N9 H92 sing N N 61 DAX N10 C12 sing Y N 62 DAX N10 C14 doub Y N 63 DAX N10 H10 sing N N 64 DAX C11 C12 doub Y N 65 DAX C13 C14 sing Y N 66 DAX CD1 OD1 doub N N 67 DAX CD1 ND1 sing N N 68 DAX ND1 CD2 sing N N 69 DAX ND1 HD1 sing N N 70 DAX CD2 CD3 sing N N 71 DAX CD2 HD21 sing N N 72 DAX CD2 HD22 sing N N 73 DAX CD3 ND2 sing N N 74 DAX CD3 HD31 sing N N 75 DAX CD3 HD32 sing N N 76 DAX ND2 CD7 sing N N 77 DAX ND2 CD8 sing N N 78 DAX ND2 HD2 sing N N 79 DAX CD7 HD71 sing N N 80 DAX CD7 HD72 sing N N 81 DAX CD7 HD73 sing N N 82 DAX CD8 HD81 sing N N 83 DAX CD8 HD82 sing N N 84 DAX CD8 HD83 sing N N 85 DC OP3 P sing N N 86 DC OP3 HOP3 sing N N 87 DC P OP1 doub N N 88 DC P OP2 sing N N 89 DC P "O5'" sing N N 90 DC OP2 HOP2 sing N N 91 DC "O5'" "C5'" sing N N 92 DC "C5'" "C4'" sing N N 93 DC "C5'" "H5'" sing N N 94 DC "C5'" "H5''" sing N N 95 DC "C4'" "O4'" sing N N 96 DC "C4'" "C3'" sing N N 97 DC "C4'" "H4'" sing N N 98 DC "O4'" "C1'" sing N N 99 DC "C3'" "O3'" sing N N 100 DC "C3'" "C2'" sing N N 101 DC "C3'" "H3'" sing N N 102 DC "O3'" "HO3'" sing N N 103 DC "C2'" "C1'" sing N N 104 DC "C2'" "H2'" sing N N 105 DC "C2'" "H2''" sing N N 106 DC "C1'" N1 sing N N 107 DC "C1'" "H1'" sing N N 108 DC N1 C2 sing N N 109 DC N1 C6 sing N N 110 DC C2 O2 doub N N 111 DC C2 N3 sing N N 112 DC N3 C4 doub N N 113 DC C4 N4 sing N N 114 DC C4 C5 sing N N 115 DC N4 H41 sing N N 116 DC N4 H42 sing N N 117 DC C5 C6 doub N N 118 DC C5 H5 sing N N 119 DC C6 H6 sing N N 120 DG OP3 P sing N N 121 DG OP3 HOP3 sing N N 122 DG P OP1 doub N N 123 DG P OP2 sing N N 124 DG P "O5'" sing N N 125 DG OP2 HOP2 sing N N 126 DG "O5'" "C5'" sing N N 127 DG "C5'" "C4'" sing N N 128 DG "C5'" "H5'" sing N N 129 DG "C5'" "H5''" sing N N 130 DG "C4'" "O4'" sing N N 131 DG "C4'" "C3'" sing N N 132 DG "C4'" "H4'" sing N N 133 DG "O4'" "C1'" sing N N 134 DG "C3'" "O3'" sing N N 135 DG "C3'" "C2'" sing N N 136 DG "C3'" "H3'" sing N N 137 DG "O3'" "HO3'" sing N N 138 DG "C2'" "C1'" sing N N 139 DG "C2'" "H2'" sing N N 140 DG "C2'" "H2''" sing N N 141 DG "C1'" N9 sing N N 142 DG "C1'" "H1'" sing N N 143 DG N9 C8 sing Y N 144 DG N9 C4 sing Y N 145 DG C8 N7 doub Y N 146 DG C8 H8 sing N N 147 DG N7 C5 sing Y N 148 DG C5 C6 sing N N 149 DG C5 C4 doub Y N 150 DG C6 O6 doub N N 151 DG C6 N1 sing N N 152 DG N1 C2 sing N N 153 DG N1 H1 sing N N 154 DG C2 N2 sing N N 155 DG C2 N3 doub N N 156 DG N2 H21 sing N N 157 DG N2 H22 sing N N 158 DG N3 C4 sing N N 159 DT OP3 P sing N N 160 DT OP3 HOP3 sing N N 161 DT P OP1 doub N N 162 DT P OP2 sing N N 163 DT P "O5'" sing N N 164 DT OP2 HOP2 sing N N 165 DT "O5'" "C5'" sing N N 166 DT "C5'" "C4'" sing N N 167 DT "C5'" "H5'" sing N N 168 DT "C5'" "H5''" sing N N 169 DT "C4'" "O4'" sing N N 170 DT "C4'" "C3'" sing N N 171 DT "C4'" "H4'" sing N N 172 DT "O4'" "C1'" sing N N 173 DT "C3'" "O3'" sing N N 174 DT "C3'" "C2'" sing N N 175 DT "C3'" "H3'" sing N N 176 DT "O3'" "HO3'" sing N N 177 DT "C2'" "C1'" sing N N 178 DT "C2'" "H2'" sing N N 179 DT "C2'" "H2''" sing N N 180 DT "C1'" N1 sing N N 181 DT "C1'" "H1'" sing N N 182 DT N1 C2 sing N N 183 DT N1 C6 sing N N 184 DT C2 O2 doub N N 185 DT C2 N3 sing N N 186 DT N3 C4 sing N N 187 DT N3 H3 sing N N 188 DT C4 O4 doub N N 189 DT C4 C5 sing N N 190 DT C5 C7 sing N N 191 DT C5 C6 doub N N 192 DT C7 H71 sing N N 193 DT C7 H72 sing N N 194 DT C7 H73 sing N N 195 DT C6 H6 sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 SPM N1 C2 sing N N 199 SPM N1 HN11 sing N N 200 SPM N1 HN12 sing N N 201 SPM C2 C3 sing N N 202 SPM C2 H21 sing N N 203 SPM C2 H22 sing N N 204 SPM C3 C4 sing N N 205 SPM C3 H31 sing N N 206 SPM C3 H32 sing N N 207 SPM C4 N5 sing N N 208 SPM C4 H41 sing N N 209 SPM C4 H42 sing N N 210 SPM N5 C6 sing N N 211 SPM N5 HN5 sing N N 212 SPM C6 C7 sing N N 213 SPM C6 H61 sing N N 214 SPM C6 H62 sing N N 215 SPM C7 C8 sing N N 216 SPM C7 H71 sing N N 217 SPM C7 H72 sing N N 218 SPM C8 C9 sing N N 219 SPM C8 H81 sing N N 220 SPM C8 H82 sing N N 221 SPM C9 N10 sing N N 222 SPM C9 H91 sing N N 223 SPM C9 H92 sing N N 224 SPM N10 C11 sing N N 225 SPM N10 HN0 sing N N 226 SPM C11 C12 sing N N 227 SPM C11 H111 sing N N 228 SPM C11 H112 sing N N 229 SPM C12 C13 sing N N 230 SPM C12 H121 sing N N 231 SPM C12 H122 sing N N 232 SPM C13 N14 sing N N 233 SPM C13 H131 sing N N 234 SPM C13 H132 sing N N 235 SPM N14 HN41 sing N N 236 SPM N14 HN42 sing N N 237 # _ndb_struct_conf_na.entry_id 1M69 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 4_655 0.174 -0.201 0.207 0.179 -9.448 -2.344 1 A_DC1001:DG1006_A A 1001 ? A 1006 ? 19 1 1 A DG 2 1_555 A DC 5 4_655 -0.248 -0.185 0.023 -5.780 -1.850 -1.534 2 A_DG1002:DC1005_A A 1002 ? A 1005 ? 19 1 1 A DT 3 1_555 A DA 4 4_655 0.002 -0.246 0.344 0.324 -8.702 -4.526 3 A_DT1003:DA1004_A A 1003 ? A 1004 ? 20 1 1 A DA 4 1_555 A DT 3 4_655 -0.002 -0.246 0.344 -0.324 -8.702 -4.526 4 A_DA1004:DT1003_A A 1004 ? A 1003 ? 20 1 1 A DC 5 1_555 A DG 2 4_655 0.248 -0.185 0.023 5.780 -1.850 -1.534 5 A_DC1005:DG1002_A A 1005 ? A 1002 ? 19 1 1 A DG 6 1_555 A DC 1 4_655 -0.174 -0.201 0.207 -0.179 -9.448 -2.344 6 A_DG1006:DC1001_A A 1006 ? A 1001 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 4_655 A DG 2 1_555 A DC 5 4_655 0.303 0.391 6.805 0.962 0.994 23.307 0.260 -0.065 6.822 2.458 -2.379 23.347 1 AA_DC1001DG1002:DC1005DG1006_AA A 1001 ? A 1006 ? A 1002 ? A 1005 ? 1 A DG 2 1_555 A DC 5 4_655 A DT 3 1_555 A DA 4 4_655 -0.595 -0.156 3.328 -1.596 2.064 28.254 -0.804 0.838 3.336 4.216 3.261 28.372 2 AA_DG1002DT1003:DA1004DC1005_AA A 1002 ? A 1005 ? A 1003 ? A 1004 ? 1 A DT 3 1_555 A DA 4 4_655 A DA 4 1_555 A DT 3 4_655 0.000 1.458 3.087 0.000 -4.639 49.187 2.064 0.000 2.947 -5.559 0.000 49.392 3 AA_DT1003DA1004:DT1003DA1004_AA A 1003 ? A 1004 ? A 1004 ? A 1003 ? 1 A DA 4 1_555 A DT 3 4_655 A DC 5 1_555 A DG 2 4_655 0.595 -0.156 3.328 1.596 2.064 28.254 -0.804 -0.838 3.336 4.216 -3.261 28.372 4 AA_DA1004DC1005:DG1002DT1003_AA A 1004 ? A 1003 ? A 1005 ? A 1002 ? 1 A DC 5 1_555 A DG 2 4_655 A DG 6 1_555 A DC 1 4_655 -0.303 0.391 6.805 -0.962 0.994 23.307 0.260 0.065 6.822 2.458 2.378 23.347 5 AA_DC1005DG1006:DC1001DG1002_AA A 1005 ? A 1002 ? A 1006 ? A 1001 ? # _pdbx_initial_refinement_model.accession_code 366D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'ddf073 structure, with corrected sequence' # _atom_sites.entry_id 1M69 _atom_sites.fract_transf_matrix[1][1] 0.033128 _atom_sites.fract_transf_matrix[1][2] 0.019126 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038253 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025353 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C H N O P # loop_