HEADER TRANSCRIPTION ACTIVATOR 17-JUL-02 1M6U TITLE CRYSTAL STRUCTURE OF A NOVEL DNA-BINDING DOMAIN FROM NDT80, A TITLE 2 TRANSCRIPTIONAL ACTIVATOR REQUIRED FOR MEIOSIS IN YEAST COMPND MOL_ID: 1; COMPND 2 MOLECULE: NDT80 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, RESIDUES 59-330; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NDT80; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODON+; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSCRIPTION ACTIVATOR, YEAST PROTEIN, DNA-BINDING, MEIOSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.P.MONTANO,M.L.COTE,I.FINGERMAN,M.PIERCE,A.K.VERSHON,M.M.GEORGIADIS REVDAT 3 14-FEB-24 1M6U 1 REMARK REVDAT 2 24-FEB-09 1M6U 1 VERSN REVDAT 1 06-NOV-02 1M6U 0 JRNL AUTH S.P.MONTANO,M.L.COTE,I.FINGERMAN,M.PIERCE,A.K.VERSHON, JRNL AUTH 2 M.M.GEORGIADIS JRNL TITL CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN FROM NDT80, A JRNL TITL 2 TRANSCRIPTIONAL ACTIVATOR REQUIRED FOR MEIOSIS IN YEAST JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 14041 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12384578 JRNL DOI 10.1073/PNAS.222312199 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 24433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1239 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE : 0.4300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 48 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MAXIMUM LIKELIHOOD REMARK 4 REMARK 4 1M6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.13000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NDT80, PDB ENTRY 1M7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, CITRIC ACID, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.63750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.44850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.63750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.44850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.27500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -64.89700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 101.27500 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -64.89700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -64.89700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.27500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 59 REMARK 465 THR A 60 REMARK 465 LEU A 61 REMARK 465 GLN A 62 REMARK 465 PRO A 328 REMARK 465 SER A 329 REMARK 465 ASN A 330 REMARK 465 SER B 59 REMARK 465 THR B 60 REMARK 465 LEU B 61 REMARK 465 GLN B 62 REMARK 465 PHE B 63 REMARK 465 LYS B 64 REMARK 465 SER B 262 REMARK 465 VAL B 263 REMARK 465 LYS B 264 REMARK 465 LYS B 265 REMARK 465 PRO B 266 REMARK 465 PHE B 267 REMARK 465 GLN B 268 REMARK 465 GLN B 269 REMARK 465 ASN B 270 REMARK 465 ARG B 324 REMARK 465 GLY B 325 REMARK 465 ARG B 326 REMARK 465 SER B 327 REMARK 465 PRO B 328 REMARK 465 SER B 329 REMARK 465 ASN B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 63 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 SER A 142 OG REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 GLN A 269 CG CD OE1 NE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 SER A 327 OG REMARK 470 ASP B 103 CG OD1 OD2 REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 SER B 142 OG REMARK 470 SER B 143 OG REMARK 470 VAL B 144 CG1 CG2 REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 SER B 146 OG REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 178 CG OD1 OD2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 HIS B 198 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 470 ILE B 261 CG1 CG2 CD1 REMARK 470 PHE B 288 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 289 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 97 142.11 -173.32 REMARK 500 CYS A 125 125.11 -170.47 REMARK 500 ASP A 162 -24.62 -39.01 REMARK 500 ASP A 165 -16.54 -25.65 REMARK 500 ASN A 209 11.85 56.37 REMARK 500 GLU A 230 -27.33 -33.23 REMARK 500 PHE A 267 -41.58 -134.49 REMARK 500 LEU A 300 106.82 -162.72 REMARK 500 PRO A 319 -178.96 -69.86 REMARK 500 TYR B 75 -113.35 -114.91 REMARK 500 HIS B 101 79.59 -106.81 REMARK 500 ILE B 102 -90.08 -80.07 REMARK 500 ASP B 103 -155.50 -82.12 REMARK 500 GLU B 104 40.41 -76.40 REMARK 500 LYS B 110 150.98 -32.15 REMARK 500 ARG B 111 -9.62 76.99 REMARK 500 SER B 142 102.27 -44.04 REMARK 500 SER B 143 -17.49 67.03 REMARK 500 ASP B 164 -38.58 -134.66 REMARK 500 ASP B 165 37.02 76.65 REMARK 500 ASN B 169 133.91 -37.53 REMARK 500 THR B 174 -78.46 -145.06 REMARK 500 ALA B 175 -107.55 -90.48 REMARK 500 LYS B 176 155.17 -38.15 REMARK 500 ASP B 178 -82.36 -137.45 REMARK 500 GLN B 182 -151.90 -106.37 REMARK 500 ASN B 209 78.42 60.62 REMARK 500 LYS B 214 -4.58 -56.69 REMARK 500 ASN B 225 -0.95 -59.42 REMARK 500 SER B 260 151.47 -45.48 REMARK 500 PRO B 285 79.99 -65.16 REMARK 500 PHE B 288 54.75 -65.81 REMARK 500 LYS B 303 -84.07 -44.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M7U RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF A NOVEL DNA-BINDING DOMAIN FROM NDT80, A REMARK 900 TRANSCRIPTIONAL ACTIVATOR REQUIRED FOR MEIOSIS IN YEAST, P 31 2 1 REMARK 900 SPACE GROUP REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DISCREPANCIES ARE PRESENT DUE TO REMARK 999 ERRORS IN PCR. DBREF 1M6U A 59 330 UNP P38830 NDT80_YEAST 59 330 DBREF 1M6U B 59 330 UNP P38830 NDT80_YEAST 59 330 SEQADV 1M6U THR A 213 UNP P38830 MET 213 SEE REMARK 999 SEQADV 1M6U ASN A 225 UNP P38830 ASP 225 SEE REMARK 999 SEQADV 1M6U PHE A 267 UNP P38830 SER 267 SEE REMARK 999 SEQADV 1M6U THR B 213 UNP P38830 MET 213 SEE REMARK 999 SEQADV 1M6U ASN B 225 UNP P38830 ASP 225 SEE REMARK 999 SEQADV 1M6U PHE B 267 UNP P38830 SER 267 SEE REMARK 999 SEQRES 1 A 272 SER THR LEU GLN PHE LYS VAL GLY PRO PRO PHE GLU LEU SEQRES 2 A 272 VAL ARG ASP TYR CYS PRO VAL VAL GLU SER HIS THR GLY SEQRES 3 A 272 ARG THR LEU ASP LEU ARG ILE ILE PRO ARG ILE ASP ARG SEQRES 4 A 272 GLY PHE ASP HIS ILE ASP GLU GLU TRP VAL GLY TYR LYS SEQRES 5 A 272 ARG ASN TYR PHE THR LEU VAL SER THR PHE GLU THR ALA SEQRES 6 A 272 ASN CYS ASP LEU ASP THR PHE LEU LYS SER SER PHE ASP SEQRES 7 A 272 LEU LEU VAL GLU ASP SER SER VAL GLU SER ARG LEU ARG SEQRES 8 A 272 VAL GLN TYR PHE ALA ILE LYS ILE LYS ALA LYS ASN ASP SEQRES 9 A 272 ASP ASP ASP THR GLU ILE ASN LEU VAL GLN HIS THR ALA SEQRES 10 A 272 LYS ARG ASP LYS GLY PRO GLN PHE CYS PRO SER VAL CYS SEQRES 11 A 272 PRO LEU VAL PRO SER PRO LEU PRO LYS HIS GLN ILE ILE SEQRES 12 A 272 ARG GLU ALA SER ASN VAL ARG ASN ILE THR LYS THR LYS SEQRES 13 A 272 LYS TYR ASP SER THR PHE TYR LEU HIS ARG ASN HIS VAL SEQRES 14 A 272 ASN TYR GLU GLU TYR GLY VAL ASP SER LEU LEU PHE SER SEQRES 15 A 272 TYR PRO GLU ASP SER ILE GLN LYS VAL ALA ARG TYR GLU SEQRES 16 A 272 ARG VAL GLN PHE ALA SER SER ILE SER VAL LYS LYS PRO SEQRES 17 A 272 PHE GLN GLN ASN LYS HIS PHE SER LEU HIS VAL ILE LEU SEQRES 18 A 272 GLY ALA VAL VAL ASP PRO ASP THR PHE HIS GLY GLU ASN SEQRES 19 A 272 PRO GLY ILE PRO TYR ASP GLU LEU ALA LEU LYS ASN GLY SEQRES 20 A 272 SER LYS GLY MET PHE VAL TYR LEU GLN GLU MET LYS THR SEQRES 21 A 272 PRO PRO LEU ILE ILE ARG GLY ARG SER PRO SER ASN SEQRES 1 B 272 SER THR LEU GLN PHE LYS VAL GLY PRO PRO PHE GLU LEU SEQRES 2 B 272 VAL ARG ASP TYR CYS PRO VAL VAL GLU SER HIS THR GLY SEQRES 3 B 272 ARG THR LEU ASP LEU ARG ILE ILE PRO ARG ILE ASP ARG SEQRES 4 B 272 GLY PHE ASP HIS ILE ASP GLU GLU TRP VAL GLY TYR LYS SEQRES 5 B 272 ARG ASN TYR PHE THR LEU VAL SER THR PHE GLU THR ALA SEQRES 6 B 272 ASN CYS ASP LEU ASP THR PHE LEU LYS SER SER PHE ASP SEQRES 7 B 272 LEU LEU VAL GLU ASP SER SER VAL GLU SER ARG LEU ARG SEQRES 8 B 272 VAL GLN TYR PHE ALA ILE LYS ILE LYS ALA LYS ASN ASP SEQRES 9 B 272 ASP ASP ASP THR GLU ILE ASN LEU VAL GLN HIS THR ALA SEQRES 10 B 272 LYS ARG ASP LYS GLY PRO GLN PHE CYS PRO SER VAL CYS SEQRES 11 B 272 PRO LEU VAL PRO SER PRO LEU PRO LYS HIS GLN ILE ILE SEQRES 12 B 272 ARG GLU ALA SER ASN VAL ARG ASN ILE THR LYS THR LYS SEQRES 13 B 272 LYS TYR ASP SER THR PHE TYR LEU HIS ARG ASN HIS VAL SEQRES 14 B 272 ASN TYR GLU GLU TYR GLY VAL ASP SER LEU LEU PHE SER SEQRES 15 B 272 TYR PRO GLU ASP SER ILE GLN LYS VAL ALA ARG TYR GLU SEQRES 16 B 272 ARG VAL GLN PHE ALA SER SER ILE SER VAL LYS LYS PRO SEQRES 17 B 272 PHE GLN GLN ASN LYS HIS PHE SER LEU HIS VAL ILE LEU SEQRES 18 B 272 GLY ALA VAL VAL ASP PRO ASP THR PHE HIS GLY GLU ASN SEQRES 19 B 272 PRO GLY ILE PRO TYR ASP GLU LEU ALA LEU LYS ASN GLY SEQRES 20 B 272 SER LYS GLY MET PHE VAL TYR LEU GLN GLU MET LYS THR SEQRES 21 B 272 PRO PRO LEU ILE ILE ARG GLY ARG SER PRO SER ASN HET SO4 A 400 5 HET SO4 A 500 5 HET SO4 A 700 5 HET SO4 B 600 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *110(H2 O) HELIX 1 1 ASP A 126 SER A 133 1 8 HELIX 2 2 LYS A 197 VAL A 207 1 11 HELIX 3 3 ASN A 209 THR A 213 5 5 HELIX 4 4 TYR A 216 PHE A 220 1 5 HELIX 5 5 ASN A 225 VAL A 227 5 3 HELIX 6 6 ASN A 228 TYR A 232 5 5 HELIX 7 7 SER A 236 TYR A 241 5 6 HELIX 8 8 ASP A 284 PHE A 288 5 5 HELIX 9 9 ASP B 126 SER B 133 1 8 HELIX 10 10 LYS B 197 SER B 205 1 9 HELIX 11 11 ASN B 209 THR B 213 5 5 HELIX 12 12 TYR B 216 PHE B 220 1 5 HELIX 13 13 ASN B 225 VAL B 227 5 3 HELIX 14 14 ASN B 228 TYR B 232 5 5 HELIX 15 15 SER B 236 TYR B 241 5 6 SHEET 1 A17 ARG A 90 ARG A 97 0 SHEET 2 A17 PHE A 114 GLU A 121 -1 N THR A 115 O ARG A 97 SHEET 3 A17 ALA A 250 ALA A 258 -1 N ALA A 250 O SER A 118 SHEET 4 A17 GLU A 167 GLN A 172 -1 O ASN A 169 N ALA A 258 SHEET 5 A17 TYR A 152 ASN A 161 -1 O ALA A 159 N ILE A 168 SHEET 6 A17 CYS A 188 PRO A 189 -1 N CYS A 188 O ILE A 155 SHEET 7 A17 TYR A 152 ASN A 161 -1 O ILE A 155 N CYS A 188 SHEET 8 A17 HIS A 272 VAL A 283 -1 O SER A 274 N LYS A 160 SHEET 9 A17 LYS A 307 LYS A 317 -1 O MET A 309 N VAL A 283 SHEET 10 A17 TYR A 297 ALA A 301 -1 O ASP A 298 N PHE A 310 SHEET 11 A17 LYS A 307 LYS A 317 -1 O GLY A 308 N LEU A 300 SHEET 12 A17 GLU A 70 ASP A 74 -1 N GLU A 70 O LYS A 317 SHEET 13 A17 LYS A 307 LYS A 317 -1 O GLU A 315 N VAL A 72 SHEET 14 A17 HIS A 272 VAL A 283 -1 N VAL A 277 O MET A 316 SHEET 15 A17 LEU A 321 ARG A 324 -1 O LEU A 321 N PHE A 273 SHEET 16 A17 GLU A 105 TYR A 109 1 O TRP A 106 N ILE A 322 SHEET 17 A17 ASP A 100 ILE A 102 -1 O ASP A 100 N VAL A 107 SHEET 1 B 2 PHE A 135 GLU A 140 0 SHEET 2 B 2 GLU A 145 ARG A 149 -1 N SER A 146 O VAL A 139 SHEET 1 C 2 TYR A 221 HIS A 223 0 SHEET 2 C 2 SER A 245 GLN A 247 -1 N ILE A 246 O LEU A 222 SHEET 1 D15 VAL B 78 GLU B 80 0 SHEET 2 D15 PHE B 135 GLU B 140 -1 N ASP B 136 O VAL B 79 SHEET 3 D15 GLU B 145 ASN B 161 -1 N SER B 146 O VAL B 139 SHEET 4 D15 CYS B 188 PRO B 189 -1 N CYS B 188 O ILE B 155 SHEET 5 D15 GLU B 145 ASN B 161 -1 O ILE B 155 N CYS B 188 SHEET 6 D15 HIS B 272 VAL B 283 -1 N SER B 274 O LYS B 160 SHEET 7 D15 GLY B 308 LYS B 317 -1 O MET B 309 N VAL B 283 SHEET 8 D15 TYR B 297 LEU B 300 -1 N ASP B 298 O PHE B 310 SHEET 9 D15 GLY B 308 LYS B 317 -1 O GLY B 308 N LEU B 300 SHEET 10 D15 GLU B 70 ASP B 74 -1 N GLU B 70 O LYS B 317 SHEET 11 D15 GLY B 308 LYS B 317 -1 O GLU B 315 N VAL B 72 SHEET 12 D15 HIS B 272 VAL B 283 -1 N VAL B 277 O MET B 316 SHEET 13 D15 LEU B 321 ILE B 322 -1 O LEU B 321 N PHE B 273 SHEET 14 D15 TRP B 106 VAL B 107 1 O TRP B 106 N ILE B 322 SHEET 15 D15 ASP B 100 HIS B 101 -1 N ASP B 100 O VAL B 107 SHEET 1 E 4 ARG B 90 ARG B 97 0 SHEET 2 E 4 PHE B 114 GLU B 121 -1 O THR B 115 N ASP B 96 SHEET 3 E 4 ALA B 250 PHE B 257 -1 N ALA B 250 O SER B 118 SHEET 4 E 4 LEU B 170 GLN B 172 -1 N VAL B 171 O GLN B 256 SHEET 1 F 2 TYR B 221 HIS B 223 0 SHEET 2 F 2 SER B 245 GLN B 247 -1 N ILE B 246 O LEU B 222 CISPEP 1 LYS A 265 PRO A 266 0 0.09 SITE 1 AC1 7 ARG A 97 GLY A 98 ASN A 112 ARG A 202 SITE 2 AC1 7 HOH A 746 HOH A 768 HOH A 769 SITE 1 AC2 4 HIS A 101 ILE A 102 ASP A 103 GLU A 104 SITE 1 AC3 7 SER A 259 LYS A 265 PRO A 266 PHE A 267 SITE 2 AC3 7 GLN A 268 HOH A 729 ARG B 85 SITE 1 AC4 7 ALA A 204 VAL A 207 ARG A 208 ASN A 209 SITE 2 AC4 7 ILE A 210 THR A 211 ARG A 251 CRYST1 101.275 64.897 92.419 90.00 107.52 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009874 0.000000 0.003117 0.00000 SCALE2 0.000000 0.015409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011347 0.00000