HEADER TRANSCRIPTION ACTIVATOR 22-JUL-02 1M7U TITLE CRYSTAL STRUCTURE OF A NOVEL DNA-BINDING DOMAIN FROM NDT80, A TITLE 2 TRANSCRIPTIONAL ACTIVATOR REQUIRED FOR MEIOSIS IN YEAST COMPND MOL_ID: 1; COMPND 2 MOLECULE: NDT80 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, RESIDUES 59-330; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NDT80; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODON+; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSCRIPTION ACTIVATOR, YEAST PROTEIN, DNA-BINDING, MEIOSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.P.MONTANO,M.L.COTE,I.FINGERMAN,M.PIERCE,A.K.VERSHON,M.M.GEORGIADIS REVDAT 3 14-FEB-24 1M7U 1 REMARK REVDAT 2 24-FEB-09 1M7U 1 VERSN REVDAT 1 06-NOV-02 1M7U 0 JRNL AUTH S.P.MONTANO,M.L.COTE,I.FINGERMAN,M.PIERCE,A.K.VERSHON, JRNL AUTH 2 M.M.GEORGIADIS JRNL TITL CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN FROM NDT80, A JRNL TITL 2 TRANSCRIPTIONAL ACTIVATOR REQUIRED FOR MEIOSIS IN YEAST JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 14041 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12384578 JRNL DOI 10.1073/PNAS.222312199 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 60 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3747 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MAXIMUM LIKELIHOOD REMARK 4 REMARK 4 1M7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21000 REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, CITRIC ACID, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.05333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 190.10667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 190.10667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.05333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 59 REMARK 465 THR A 60 REMARK 465 LEU A 61 REMARK 465 GLN A 62 REMARK 465 PHE A 63 REMARK 465 LYS A 64 REMARK 465 LYS A 176 REMARK 465 ARG A 177 REMARK 465 ASP A 178 REMARK 465 LYS A 264 REMARK 465 LYS A 265 REMARK 465 PRO A 266 REMARK 465 PHE A 267 REMARK 465 GLN A 268 REMARK 465 GLN A 269 REMARK 465 HIS A 289 REMARK 465 GLY A 290 REMARK 465 GLU A 291 REMARK 465 ARG A 326 REMARK 465 SER A 327 REMARK 465 PRO A 328 REMARK 465 SER A 329 REMARK 465 ASN A 330 REMARK 465 SER B 59 REMARK 465 THR B 60 REMARK 465 LEU B 61 REMARK 465 GLN B 62 REMARK 465 PHE B 63 REMARK 465 LYS B 64 REMARK 465 ALA B 175 REMARK 465 LYS B 176 REMARK 465 ARG B 177 REMARK 465 ASP B 178 REMARK 465 LYS B 179 REMARK 465 GLY B 180 REMARK 465 PRO B 181 REMARK 465 GLN B 182 REMARK 465 PHE B 183 REMARK 465 ILE B 261 REMARK 465 SER B 262 REMARK 465 VAL B 263 REMARK 465 LYS B 264 REMARK 465 LYS B 265 REMARK 465 PRO B 266 REMARK 465 PHE B 267 REMARK 465 GLN B 268 REMARK 465 GLN B 269 REMARK 465 ASN B 270 REMARK 465 ARG B 324 REMARK 465 GLY B 325 REMARK 465 ARG B 326 REMARK 465 SER B 327 REMARK 465 PRO B 328 REMARK 465 SER B 329 REMARK 465 ASN B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 ASP A 141 CG OD1 OD2 REMARK 470 SER A 142 OG REMARK 470 SER A 143 OG REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLN A 199 CG CD OE1 NE2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 207 CG1 CG2 REMARK 470 ASP A 235 CG OD1 OD2 REMARK 470 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 470 SER A 259 OG REMARK 470 SER A 260 OG REMARK 470 SER A 262 OG REMARK 470 VAL A 263 CG1 CG2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 ASN A 304 CG OD1 ND2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 ILE B 102 CG1 CG2 CD1 REMARK 470 ASP B 103 CG OD1 OD2 REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 113 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 ASP B 162 CG OD1 OD2 REMARK 470 ASP B 165 CG OD1 OD2 REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 ILE B 168 CG1 CG2 CD1 REMARK 470 HIS B 173 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 174 OG1 CG2 REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 ARG B 208 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 209 CG OD1 ND2 REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 470 GLU B 253 CG CD OE1 OE2 REMARK 470 ARG B 254 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 256 CG CD OE1 NE2 REMARK 470 PHE B 257 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 259 OG REMARK 470 SER B 260 OG REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 HIS B 272 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 273 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 304 CG OD1 ND2 REMARK 470 LEU B 321 CG CD1 CD2 REMARK 470 ILE B 322 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 151 OG SER B 240 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 75 -106.01 -90.38 REMARK 500 ARG A 94 130.15 175.17 REMARK 500 ARG A 97 142.21 -175.57 REMARK 500 ASP A 103 85.78 40.78 REMARK 500 ARG A 111 31.01 -90.31 REMARK 500 ASN A 124 35.80 -97.34 REMARK 500 CYS A 125 131.90 -170.07 REMARK 500 SER A 142 -47.73 -133.82 REMARK 500 SER A 143 -64.20 -125.37 REMARK 500 THR A 174 -27.36 -143.06 REMARK 500 ASN A 209 60.12 63.35 REMARK 500 LYS A 212 34.42 -87.86 REMARK 500 ASN A 225 1.32 -67.16 REMARK 500 SER A 262 73.80 -12.51 REMARK 500 ASP A 286 22.03 -75.36 REMARK 500 PRO A 296 106.18 -53.10 REMARK 500 ASN A 304 30.96 -75.26 REMARK 500 LEU A 313 -53.57 -130.87 REMARK 500 ARG A 324 -165.20 -124.54 REMARK 500 TYR B 75 -105.59 -99.96 REMARK 500 ARG B 94 139.92 -179.56 REMARK 500 ARG B 97 149.50 179.03 REMARK 500 ILE B 102 -82.23 -48.23 REMARK 500 ASP B 103 -82.13 -116.37 REMARK 500 LYS B 110 -80.64 -33.94 REMARK 500 ARG B 111 39.26 -87.71 REMARK 500 CYS B 125 119.15 -163.20 REMARK 500 PRO B 185 -1.48 -52.47 REMARK 500 SER B 186 -78.39 -57.76 REMARK 500 SER B 193 150.24 169.14 REMARK 500 ARG B 208 -70.32 -69.46 REMARK 500 ARG B 254 78.12 62.32 REMARK 500 PHE B 257 76.10 -160.45 REMARK 500 SER B 259 47.18 -167.43 REMARK 500 PRO B 285 -37.78 -39.24 REMARK 500 GLU B 291 -75.92 -15.33 REMARK 500 ASN B 292 100.78 -58.22 REMARK 500 ASN B 304 44.31 -64.47 REMARK 500 SER B 306 170.89 -54.19 REMARK 500 LEU B 313 -44.24 -140.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M6U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A NOVEL DNA-BINDING DOMAIN FROM NDT80, A REMARK 900 TRANSCRIPTIONAL ACTIVATOR REQUIRED FOR MEIOSIS IN YEAST, C 2 SPACE REMARK 900 GROUP REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DISCREPANCIES ARE PRESENT DUE TO REMARK 999 ERRORS IN PCR. DBREF 1M7U A 59 330 UNP P38830 NDT80_YEAST 59 330 DBREF 1M7U B 59 330 UNP P38830 NDT80_YEAST 59 330 SEQADV 1M7U THR A 213 UNP P38830 MET 213 SEE REMARK 999 SEQADV 1M7U ASN A 225 UNP P38830 ASP 225 SEE REMARK 999 SEQADV 1M7U PHE A 267 UNP P38830 SER 267 SEE REMARK 999 SEQADV 1M7U THR B 213 UNP P38830 MET 213 SEE REMARK 999 SEQADV 1M7U ASN B 225 UNP P38830 ASP 225 SEE REMARK 999 SEQADV 1M7U PHE B 267 UNP P38830 SER 267 SEE REMARK 999 SEQRES 1 A 272 SER THR LEU GLN PHE LYS VAL GLY PRO PRO PHE GLU LEU SEQRES 2 A 272 VAL ARG ASP TYR CYS PRO VAL VAL GLU SER HIS THR GLY SEQRES 3 A 272 ARG THR LEU ASP LEU ARG ILE ILE PRO ARG ILE ASP ARG SEQRES 4 A 272 GLY PHE ASP HIS ILE ASP GLU GLU TRP VAL GLY TYR LYS SEQRES 5 A 272 ARG ASN TYR PHE THR LEU VAL SER THR PHE GLU THR ALA SEQRES 6 A 272 ASN CYS ASP LEU ASP THR PHE LEU LYS SER SER PHE ASP SEQRES 7 A 272 LEU LEU VAL GLU ASP SER SER VAL GLU SER ARG LEU ARG SEQRES 8 A 272 VAL GLN TYR PHE ALA ILE LYS ILE LYS ALA LYS ASN ASP SEQRES 9 A 272 ASP ASP ASP THR GLU ILE ASN LEU VAL GLN HIS THR ALA SEQRES 10 A 272 LYS ARG ASP LYS GLY PRO GLN PHE CYS PRO SER VAL CYS SEQRES 11 A 272 PRO LEU VAL PRO SER PRO LEU PRO LYS HIS GLN ILE ILE SEQRES 12 A 272 ARG GLU ALA SER ASN VAL ARG ASN ILE THR LYS THR LYS SEQRES 13 A 272 LYS TYR ASP SER THR PHE TYR LEU HIS ARG ASN HIS VAL SEQRES 14 A 272 ASN TYR GLU GLU TYR GLY VAL ASP SER LEU LEU PHE SER SEQRES 15 A 272 TYR PRO GLU ASP SER ILE GLN LYS VAL ALA ARG TYR GLU SEQRES 16 A 272 ARG VAL GLN PHE ALA SER SER ILE SER VAL LYS LYS PRO SEQRES 17 A 272 PHE GLN GLN ASN LYS HIS PHE SER LEU HIS VAL ILE LEU SEQRES 18 A 272 GLY ALA VAL VAL ASP PRO ASP THR PHE HIS GLY GLU ASN SEQRES 19 A 272 PRO GLY ILE PRO TYR ASP GLU LEU ALA LEU LYS ASN GLY SEQRES 20 A 272 SER LYS GLY MET PHE VAL TYR LEU GLN GLU MET LYS THR SEQRES 21 A 272 PRO PRO LEU ILE ILE ARG GLY ARG SER PRO SER ASN SEQRES 1 B 272 SER THR LEU GLN PHE LYS VAL GLY PRO PRO PHE GLU LEU SEQRES 2 B 272 VAL ARG ASP TYR CYS PRO VAL VAL GLU SER HIS THR GLY SEQRES 3 B 272 ARG THR LEU ASP LEU ARG ILE ILE PRO ARG ILE ASP ARG SEQRES 4 B 272 GLY PHE ASP HIS ILE ASP GLU GLU TRP VAL GLY TYR LYS SEQRES 5 B 272 ARG ASN TYR PHE THR LEU VAL SER THR PHE GLU THR ALA SEQRES 6 B 272 ASN CYS ASP LEU ASP THR PHE LEU LYS SER SER PHE ASP SEQRES 7 B 272 LEU LEU VAL GLU ASP SER SER VAL GLU SER ARG LEU ARG SEQRES 8 B 272 VAL GLN TYR PHE ALA ILE LYS ILE LYS ALA LYS ASN ASP SEQRES 9 B 272 ASP ASP ASP THR GLU ILE ASN LEU VAL GLN HIS THR ALA SEQRES 10 B 272 LYS ARG ASP LYS GLY PRO GLN PHE CYS PRO SER VAL CYS SEQRES 11 B 272 PRO LEU VAL PRO SER PRO LEU PRO LYS HIS GLN ILE ILE SEQRES 12 B 272 ARG GLU ALA SER ASN VAL ARG ASN ILE THR LYS THR LYS SEQRES 13 B 272 LYS TYR ASP SER THR PHE TYR LEU HIS ARG ASN HIS VAL SEQRES 14 B 272 ASN TYR GLU GLU TYR GLY VAL ASP SER LEU LEU PHE SER SEQRES 15 B 272 TYR PRO GLU ASP SER ILE GLN LYS VAL ALA ARG TYR GLU SEQRES 16 B 272 ARG VAL GLN PHE ALA SER SER ILE SER VAL LYS LYS PRO SEQRES 17 B 272 PHE GLN GLN ASN LYS HIS PHE SER LEU HIS VAL ILE LEU SEQRES 18 B 272 GLY ALA VAL VAL ASP PRO ASP THR PHE HIS GLY GLU ASN SEQRES 19 B 272 PRO GLY ILE PRO TYR ASP GLU LEU ALA LEU LYS ASN GLY SEQRES 20 B 272 SER LYS GLY MET PHE VAL TYR LEU GLN GLU MET LYS THR SEQRES 21 B 272 PRO PRO LEU ILE ILE ARG GLY ARG SER PRO SER ASN FORMUL 3 HOH *46(H2 O) HELIX 1 1 ASP A 126 SER A 133 1 8 HELIX 2 3 ASN A 209 THR A 213 5 5 HELIX 3 4 TYR A 216 PHE A 220 1 5 HELIX 4 5 ASN A 225 VAL A 227 5 3 HELIX 5 6 ASN A 228 TYR A 232 5 5 HELIX 6 7 SER A 236 TYR A 241 5 6 HELIX 7 8 ASP A 284 PHE A 288 5 5 HELIX 8 9 ASP B 126 SER B 133 1 8 HELIX 9 10 LYS B 197 ASN B 206 1 10 HELIX 10 12 THR B 213 PHE B 220 1 8 HELIX 11 13 ASN B 225 VAL B 227 5 3 HELIX 12 14 SER B 236 TYR B 241 1 6 HELIX 13 15 ASP B 284 PHE B 288 5 5 SHEET 1 A14 CYS A 188 PRO A 189 0 SHEET 2 A14 TYR A 152 ASN A 161 -1 O ILE A 155 N CYS A 188 SHEET 3 A14 THR A 166 ILE A 168 -1 O THR A 166 N ASN A 161 SHEET 4 A14 TYR A 152 ASN A 161 -1 O ALA A 159 N ILE A 168 SHEET 5 A14 LYS A 271 VAL A 283 -1 O SER A 274 N LYS A 160 SHEET 6 A14 LYS A 307 LYS A 317 -1 N MET A 309 O VAL A 283 SHEET 7 A14 TYR A 297 ALA A 301 -1 O ASP A 298 N PHE A 310 SHEET 8 A14 LYS A 307 LYS A 317 -1 N GLY A 308 O LEU A 300 SHEET 9 A14 GLU A 70 ASP A 74 -1 O GLU A 70 N LYS A 317 SHEET 10 A14 LYS A 307 LYS A 317 -1 O GLU A 315 N VAL A 72 SHEET 11 A14 LYS A 271 VAL A 283 -1 N VAL A 277 O MET A 316 SHEET 12 A14 LEU A 321 ARG A 324 -1 N LEU A 321 O PHE A 273 SHEET 13 A14 TRP A 106 TYR A 109 1 O TRP A 106 N ILE A 322 SHEET 14 A14 ASP A 100 HIS A 101 -1 O ASP A 100 N VAL A 107 SHEET 1 B 3 VAL A 78 GLU A 80 0 SHEET 2 B 3 PHE A 135 GLU A 140 -1 N ASP A 136 O VAL A 79 SHEET 3 B 3 GLU A 145 ARG A 149 -1 N SER A 146 O VAL A 139 SHEET 1 C 4 LEU A 89 ARG A 97 0 SHEET 2 C 4 PHE A 114 THR A 122 -1 N THR A 115 O ARG A 97 SHEET 3 C 4 ALA A 250 PHE A 257 -1 N ALA A 250 O SER A 118 SHEET 4 C 4 LEU A 170 GLN A 172 -1 O VAL A 171 N GLN A 256 SHEET 1 D 2 TYR A 221 HIS A 223 0 SHEET 2 D 2 SER A 245 GLN A 247 -1 N ILE A 246 O LEU A 222 SHEET 1 E14 CYS B 188 PRO B 189 0 SHEET 2 E14 TYR B 152 ASN B 161 -1 O ILE B 155 N CYS B 188 SHEET 3 E14 THR B 166 ILE B 168 -1 O THR B 166 N ASN B 161 SHEET 4 E14 TYR B 152 ASN B 161 -1 O ALA B 159 N ILE B 168 SHEET 5 E14 HIS B 272 VAL B 283 -1 O SER B 274 N LYS B 160 SHEET 6 E14 LYS B 307 LYS B 317 -1 O MET B 309 N VAL B 283 SHEET 7 E14 TYR B 297 ALA B 301 -1 O ASP B 298 N PHE B 310 SHEET 8 E14 LYS B 307 LYS B 317 -1 N GLY B 308 O LEU B 300 SHEET 9 E14 GLU B 70 ASP B 74 -1 O GLU B 70 N LYS B 317 SHEET 10 E14 LYS B 307 LYS B 317 -1 O GLU B 315 N VAL B 72 SHEET 11 E14 HIS B 272 VAL B 283 -1 N VAL B 277 O MET B 316 SHEET 12 E14 LEU B 321 ILE B 322 -1 N LEU B 321 O PHE B 273 SHEET 13 E14 TRP B 106 GLY B 108 1 O TRP B 106 N ILE B 322 SHEET 14 E14 PHE B 99 HIS B 101 -1 O ASP B 100 N VAL B 107 SHEET 1 F 3 VAL B 78 GLU B 80 0 SHEET 2 F 3 PHE B 135 ASP B 141 -1 O ASP B 136 N VAL B 79 SHEET 3 F 3 VAL B 144 ARG B 149 -1 O VAL B 144 N ASP B 141 SHEET 1 G 4 ARG B 90 ARG B 97 0 SHEET 2 G 4 PHE B 114 GLU B 121 -1 N THR B 115 O ARG B 97 SHEET 3 G 4 ALA B 250 GLN B 256 -1 N ALA B 250 O SER B 118 SHEET 4 G 4 VAL B 171 GLN B 172 -1 N VAL B 171 O GLN B 256 SHEET 1 H 2 TYR B 221 HIS B 223 0 SHEET 2 H 2 SER B 245 GLN B 247 -1 O ILE B 246 N LEU B 222 CRYST1 63.960 63.960 285.160 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015635 0.009027 0.000000 0.00000 SCALE2 0.000000 0.018053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003507 0.00000