HEADER TRANSCRIPTION FACTOR 22-JUL-02 1M7W TITLE HNF4A LIGAND BINDING DOMAIN WITH BOUND FATTY ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 4-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 133-382; COMPND 5 SYNONYM: HNF-4-ALPHA, TRANSCRIPTION FACTOR HNF-4, TRANSCRIPTION COMPND 6 FACTOR 14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS RATTUS; SOURCE 3 ORGANISM_COMMON: BLACK RAT; SOURCE 4 ORGANISM_TAXID: 10117; SOURCE 5 GENE: HNF4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR S.DHE-PAGANON,K.DUDA,M.IWAMOTO,Y.I.CHI,S.E.SHOELSON REVDAT 3 14-FEB-24 1M7W 1 REMARK REVDAT 2 24-FEB-09 1M7W 1 VERSN REVDAT 1 01-JUL-03 1M7W 0 JRNL AUTH S.DHE-PAGANON,K.DUDA,M.IWAMOTO,Y.I.CHI,S.E.SHOELSON JRNL TITL CRYSTAL STRUCTURE OF THE HNF4 ALPHA LIGAND BINDING DOMAIN IN JRNL TITL 2 COMPLEX WITH ENDOGENOUS FATTY ACID LIGAND JRNL REF J.BIOL.CHEM. V. 277 37973 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12193589 JRNL DOI 10.1074/JBC.C200420200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B1.2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.84400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.14400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.14400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.92200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.14400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.14400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 170.76600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.14400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.14400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.92200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.14400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.14400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 170.76600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 113.84400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7, 8 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 8 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 133 REMARK 465 SER A 134 REMARK 465 TYR A 135 REMARK 465 GLU A 136 REMARK 465 ASP A 137 REMARK 465 SER A 138 REMARK 465 SER A 139 REMARK 465 LEU A 140 REMARK 465 PRO A 141 REMARK 465 ILE A 163 REMARK 465 ASN A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 368 REMARK 465 SER A 369 REMARK 465 ALA A 370 REMARK 465 SER A 371 REMARK 465 ASP A 372 REMARK 465 ALA A 373 REMARK 465 PRO A 374 REMARK 465 HIS A 375 REMARK 465 ALA A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 PRO A 379 REMARK 465 LEU A 380 REMARK 465 HIS A 381 REMARK 465 PRO A 382 REMARK 465 SER B 133 REMARK 465 SER B 134 REMARK 465 TYR B 135 REMARK 465 GLU B 136 REMARK 465 ASP B 137 REMARK 465 SER B 138 REMARK 465 SER B 139 REMARK 465 SER B 158 REMARK 465 PRO B 159 REMARK 465 ILE B 160 REMARK 465 SER B 161 REMARK 465 GLY B 162 REMARK 465 ILE B 163 REMARK 465 ASN B 164 REMARK 465 GLY B 165 REMARK 465 ASP B 166 REMARK 465 ILE B 167 REMARK 465 GLY B 368 REMARK 465 SER B 369 REMARK 465 ALA B 370 REMARK 465 SER B 371 REMARK 465 ASP B 372 REMARK 465 ALA B 373 REMARK 465 PRO B 374 REMARK 465 HIS B 375 REMARK 465 ALA B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 465 PRO B 379 REMARK 465 LEU B 380 REMARK 465 HIS B 381 REMARK 465 PRO B 382 REMARK 465 SER C 133 REMARK 465 SER C 134 REMARK 465 TYR C 135 REMARK 465 GLU C 136 REMARK 465 ASP C 137 REMARK 465 SER C 138 REMARK 465 SER C 139 REMARK 465 PRO C 159 REMARK 465 ILE C 160 REMARK 465 SER C 161 REMARK 465 GLY C 162 REMARK 465 ILE C 163 REMARK 465 ASN C 164 REMARK 465 GLY C 165 REMARK 465 ASP C 166 REMARK 465 GLY C 368 REMARK 465 SER C 369 REMARK 465 ALA C 370 REMARK 465 SER C 371 REMARK 465 ASP C 372 REMARK 465 ALA C 373 REMARK 465 PRO C 374 REMARK 465 HIS C 375 REMARK 465 ALA C 376 REMARK 465 HIS C 377 REMARK 465 HIS C 378 REMARK 465 PRO C 379 REMARK 465 LEU C 380 REMARK 465 HIS C 381 REMARK 465 PRO C 382 REMARK 465 SER D 133 REMARK 465 SER D 134 REMARK 465 TYR D 135 REMARK 465 GLU D 136 REMARK 465 ASP D 137 REMARK 465 SER D 138 REMARK 465 PRO D 159 REMARK 465 ILE D 160 REMARK 465 SER D 161 REMARK 465 GLY D 162 REMARK 465 ILE D 163 REMARK 465 ASN D 164 REMARK 465 GLY D 165 REMARK 465 ASP D 166 REMARK 465 GLY D 368 REMARK 465 SER D 369 REMARK 465 ALA D 370 REMARK 465 SER D 371 REMARK 465 ASP D 372 REMARK 465 ALA D 373 REMARK 465 PRO D 374 REMARK 465 HIS D 375 REMARK 465 ALA D 376 REMARK 465 HIS D 377 REMARK 465 HIS D 378 REMARK 465 PRO D 379 REMARK 465 LEU D 380 REMARK 465 HIS D 381 REMARK 465 PRO D 382 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE1 TRP D 340 O HOH D 48 1.86 REMARK 500 CE2 TRP D 340 O HOH D 48 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 161 117.13 39.59 REMARK 500 ILE A 167 -42.33 -158.32 REMARK 500 ARG A 171 129.52 85.37 REMARK 500 ASP A 205 47.67 -83.21 REMARK 500 ASP A 206 -26.22 -143.30 REMARK 500 HIS A 214 39.31 -143.73 REMARK 500 ASP A 239 -151.80 63.54 REMARK 500 TYR A 240 128.35 63.62 REMARK 500 ALA A 250 122.71 -3.71 REMARK 500 GLU A 251 -32.55 82.94 REMARK 500 ASN A 315 -66.60 -19.11 REMARK 500 ARG A 317 51.04 -145.86 REMARK 500 GLN A 318 -170.28 74.88 REMARK 500 TYR A 319 -161.39 48.14 REMARK 500 SER A 321 0.05 54.99 REMARK 500 ILE A 357 -85.55 -65.81 REMARK 500 ASP A 358 128.04 126.10 REMARK 500 LEU A 366 -147.93 -126.20 REMARK 500 ILE B 143 -69.63 29.66 REMARK 500 LEU B 147 -33.13 -38.33 REMARK 500 GLN B 155 -119.38 -77.64 REMARK 500 LYS B 170 -34.94 61.63 REMARK 500 ARG B 171 105.10 91.64 REMARK 500 ILE B 175 -58.18 -6.78 REMARK 500 HIS B 214 37.13 -140.01 REMARK 500 ASP B 239 -153.28 61.08 REMARK 500 TYR B 240 136.65 62.70 REMARK 500 ARG B 244 -76.45 -53.18 REMARK 500 CYS B 246 73.75 -115.98 REMARK 500 LEU B 249 23.63 -145.82 REMARK 500 GLU B 251 -71.44 96.12 REMARK 500 ASP B 295 63.93 -161.14 REMARK 500 GLN B 318 -94.93 -56.79 REMARK 500 TYR B 319 66.18 -8.85 REMARK 500 ASP B 320 -163.27 46.62 REMARK 500 SER B 321 10.76 154.31 REMARK 500 LEU B 330 6.08 -69.83 REMARK 500 ILE B 343 -82.20 -46.01 REMARK 500 GLU B 344 -18.59 -42.80 REMARK 500 GLN B 347 -13.75 -45.04 REMARK 500 LEU B 366 8.24 -68.16 REMARK 500 GLN C 155 44.59 -83.09 REMARK 500 ARG C 168 40.63 -96.28 REMARK 500 LYS C 170 -50.50 55.00 REMARK 500 ARG C 171 130.02 102.57 REMARK 500 ILE C 175 -73.09 3.83 REMARK 500 LEU C 203 -178.20 -69.94 REMARK 500 ASP C 239 -157.56 67.98 REMARK 500 TYR C 240 128.68 73.00 REMARK 500 GLU C 251 -5.14 72.74 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAO A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAO B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAO C 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAO D 703 DBREF 1M7W A 133 382 UNP P22449 HNF4A_RAT 133 382 DBREF 1M7W B 133 382 UNP P22449 HNF4A_RAT 133 382 DBREF 1M7W C 133 382 UNP P22449 HNF4A_RAT 133 382 DBREF 1M7W D 133 382 UNP P22449 HNF4A_RAT 133 382 SEQRES 1 A 250 SER SER TYR GLU ASP SER SER LEU PRO SER ILE ASN ALA SEQRES 2 A 250 LEU LEU GLN ALA GLU VAL LEU SER GLN GLN ILE THR SER SEQRES 3 A 250 PRO ILE SER GLY ILE ASN GLY ASP ILE ARG ALA LYS ARG SEQRES 4 A 250 ILE ALA SER ILE THR ASP VAL CYS GLU SER MET LYS GLU SEQRES 5 A 250 GLN LEU LEU VAL LEU VAL GLU TRP ALA LYS TYR ILE PRO SEQRES 6 A 250 ALA PHE CYS GLU LEU LEU LEU ASP ASP GLN VAL ALA LEU SEQRES 7 A 250 LEU ARG ALA HIS ALA GLY GLU HIS LEU LEU LEU GLY ALA SEQRES 8 A 250 THR LYS ARG SER MET VAL PHE LYS ASP VAL LEU LEU LEU SEQRES 9 A 250 GLY ASN ASP TYR ILE VAL PRO ARG HIS CYS PRO GLU LEU SEQRES 10 A 250 ALA GLU MET SER ARG VAL SER ILE ARG ILE LEU ASP GLU SEQRES 11 A 250 LEU VAL LEU PRO PHE GLN GLU LEU GLN ILE ASP ASP ASN SEQRES 12 A 250 GLU TYR ALA CYS LEU LYS ALA ILE ILE PHE PHE ASP PRO SEQRES 13 A 250 ASP ALA LYS GLY LEU SER ASP PRO GLY LYS ILE LYS ARG SEQRES 14 A 250 LEU ARG SER GLN VAL GLN VAL SER LEU GLU ASP TYR ILE SEQRES 15 A 250 ASN ASP ARG GLN TYR ASP SER ARG GLY ARG PHE GLY GLU SEQRES 16 A 250 LEU LEU LEU LEU LEU PRO THR LEU GLN SER ILE THR TRP SEQRES 17 A 250 GLN MET ILE GLU GLN ILE GLN PHE ILE LYS LEU PHE GLY SEQRES 18 A 250 MET ALA LYS ILE ASP ASN LEU LEU GLN GLU MET LEU LEU SEQRES 19 A 250 GLY GLY SER ALA SER ASP ALA PRO HIS ALA HIS HIS PRO SEQRES 20 A 250 LEU HIS PRO SEQRES 1 B 250 SER SER TYR GLU ASP SER SER LEU PRO SER ILE ASN ALA SEQRES 2 B 250 LEU LEU GLN ALA GLU VAL LEU SER GLN GLN ILE THR SER SEQRES 3 B 250 PRO ILE SER GLY ILE ASN GLY ASP ILE ARG ALA LYS ARG SEQRES 4 B 250 ILE ALA SER ILE THR ASP VAL CYS GLU SER MET LYS GLU SEQRES 5 B 250 GLN LEU LEU VAL LEU VAL GLU TRP ALA LYS TYR ILE PRO SEQRES 6 B 250 ALA PHE CYS GLU LEU LEU LEU ASP ASP GLN VAL ALA LEU SEQRES 7 B 250 LEU ARG ALA HIS ALA GLY GLU HIS LEU LEU LEU GLY ALA SEQRES 8 B 250 THR LYS ARG SER MET VAL PHE LYS ASP VAL LEU LEU LEU SEQRES 9 B 250 GLY ASN ASP TYR ILE VAL PRO ARG HIS CYS PRO GLU LEU SEQRES 10 B 250 ALA GLU MET SER ARG VAL SER ILE ARG ILE LEU ASP GLU SEQRES 11 B 250 LEU VAL LEU PRO PHE GLN GLU LEU GLN ILE ASP ASP ASN SEQRES 12 B 250 GLU TYR ALA CYS LEU LYS ALA ILE ILE PHE PHE ASP PRO SEQRES 13 B 250 ASP ALA LYS GLY LEU SER ASP PRO GLY LYS ILE LYS ARG SEQRES 14 B 250 LEU ARG SER GLN VAL GLN VAL SER LEU GLU ASP TYR ILE SEQRES 15 B 250 ASN ASP ARG GLN TYR ASP SER ARG GLY ARG PHE GLY GLU SEQRES 16 B 250 LEU LEU LEU LEU LEU PRO THR LEU GLN SER ILE THR TRP SEQRES 17 B 250 GLN MET ILE GLU GLN ILE GLN PHE ILE LYS LEU PHE GLY SEQRES 18 B 250 MET ALA LYS ILE ASP ASN LEU LEU GLN GLU MET LEU LEU SEQRES 19 B 250 GLY GLY SER ALA SER ASP ALA PRO HIS ALA HIS HIS PRO SEQRES 20 B 250 LEU HIS PRO SEQRES 1 C 250 SER SER TYR GLU ASP SER SER LEU PRO SER ILE ASN ALA SEQRES 2 C 250 LEU LEU GLN ALA GLU VAL LEU SER GLN GLN ILE THR SER SEQRES 3 C 250 PRO ILE SER GLY ILE ASN GLY ASP ILE ARG ALA LYS ARG SEQRES 4 C 250 ILE ALA SER ILE THR ASP VAL CYS GLU SER MET LYS GLU SEQRES 5 C 250 GLN LEU LEU VAL LEU VAL GLU TRP ALA LYS TYR ILE PRO SEQRES 6 C 250 ALA PHE CYS GLU LEU LEU LEU ASP ASP GLN VAL ALA LEU SEQRES 7 C 250 LEU ARG ALA HIS ALA GLY GLU HIS LEU LEU LEU GLY ALA SEQRES 8 C 250 THR LYS ARG SER MET VAL PHE LYS ASP VAL LEU LEU LEU SEQRES 9 C 250 GLY ASN ASP TYR ILE VAL PRO ARG HIS CYS PRO GLU LEU SEQRES 10 C 250 ALA GLU MET SER ARG VAL SER ILE ARG ILE LEU ASP GLU SEQRES 11 C 250 LEU VAL LEU PRO PHE GLN GLU LEU GLN ILE ASP ASP ASN SEQRES 12 C 250 GLU TYR ALA CYS LEU LYS ALA ILE ILE PHE PHE ASP PRO SEQRES 13 C 250 ASP ALA LYS GLY LEU SER ASP PRO GLY LYS ILE LYS ARG SEQRES 14 C 250 LEU ARG SER GLN VAL GLN VAL SER LEU GLU ASP TYR ILE SEQRES 15 C 250 ASN ASP ARG GLN TYR ASP SER ARG GLY ARG PHE GLY GLU SEQRES 16 C 250 LEU LEU LEU LEU LEU PRO THR LEU GLN SER ILE THR TRP SEQRES 17 C 250 GLN MET ILE GLU GLN ILE GLN PHE ILE LYS LEU PHE GLY SEQRES 18 C 250 MET ALA LYS ILE ASP ASN LEU LEU GLN GLU MET LEU LEU SEQRES 19 C 250 GLY GLY SER ALA SER ASP ALA PRO HIS ALA HIS HIS PRO SEQRES 20 C 250 LEU HIS PRO SEQRES 1 D 250 SER SER TYR GLU ASP SER SER LEU PRO SER ILE ASN ALA SEQRES 2 D 250 LEU LEU GLN ALA GLU VAL LEU SER GLN GLN ILE THR SER SEQRES 3 D 250 PRO ILE SER GLY ILE ASN GLY ASP ILE ARG ALA LYS ARG SEQRES 4 D 250 ILE ALA SER ILE THR ASP VAL CYS GLU SER MET LYS GLU SEQRES 5 D 250 GLN LEU LEU VAL LEU VAL GLU TRP ALA LYS TYR ILE PRO SEQRES 6 D 250 ALA PHE CYS GLU LEU LEU LEU ASP ASP GLN VAL ALA LEU SEQRES 7 D 250 LEU ARG ALA HIS ALA GLY GLU HIS LEU LEU LEU GLY ALA SEQRES 8 D 250 THR LYS ARG SER MET VAL PHE LYS ASP VAL LEU LEU LEU SEQRES 9 D 250 GLY ASN ASP TYR ILE VAL PRO ARG HIS CYS PRO GLU LEU SEQRES 10 D 250 ALA GLU MET SER ARG VAL SER ILE ARG ILE LEU ASP GLU SEQRES 11 D 250 LEU VAL LEU PRO PHE GLN GLU LEU GLN ILE ASP ASP ASN SEQRES 12 D 250 GLU TYR ALA CYS LEU LYS ALA ILE ILE PHE PHE ASP PRO SEQRES 13 D 250 ASP ALA LYS GLY LEU SER ASP PRO GLY LYS ILE LYS ARG SEQRES 14 D 250 LEU ARG SER GLN VAL GLN VAL SER LEU GLU ASP TYR ILE SEQRES 15 D 250 ASN ASP ARG GLN TYR ASP SER ARG GLY ARG PHE GLY GLU SEQRES 16 D 250 LEU LEU LEU LEU LEU PRO THR LEU GLN SER ILE THR TRP SEQRES 17 D 250 GLN MET ILE GLU GLN ILE GLN PHE ILE LYS LEU PHE GLY SEQRES 18 D 250 MET ALA LYS ILE ASP ASN LEU LEU GLN GLU MET LEU LEU SEQRES 19 D 250 GLY GLY SER ALA SER ASP ALA PRO HIS ALA HIS HIS PRO SEQRES 20 D 250 LEU HIS PRO HET DAO A 700 14 HET DAO B 701 14 HET DAO C 702 14 HET DAO D 703 14 HETNAM DAO LAURIC ACID FORMUL 5 DAO 4(C12 H24 O2) FORMUL 9 HOH *74(H2 O) HELIX 1 1 SER A 142 ILE A 156 1 15 HELIX 2 2 SER A 174 TYR A 195 1 22 HELIX 3 3 ILE A 196 GLU A 201 1 6 HELIX 4 4 LEU A 203 HIS A 214 1 12 HELIX 5 5 HIS A 214 ARG A 226 1 13 HELIX 6 6 CYS A 246 ALA A 250 5 5 HELIX 7 7 GLU A 251 GLU A 251 5 1 HELIX 8 8 MET A 252 LEU A 263 1 12 HELIX 9 9 LEU A 263 GLN A 271 1 9 HELIX 10 10 ASP A 273 PHE A 286 1 14 HELIX 11 11 ASP A 295 ASP A 316 1 22 HELIX 12 12 GLY A 323 LEU A 330 1 8 HELIX 13 13 LEU A 331 PHE A 352 1 22 HELIX 14 14 ASP A 358 LEU A 365 1 8 HELIX 15 15 ILE B 143 GLN B 155 1 13 HELIX 16 16 SER B 174 TYR B 195 1 22 HELIX 17 17 ILE B 196 GLU B 201 1 6 HELIX 18 18 LEU B 203 HIS B 214 1 12 HELIX 19 19 HIS B 214 MET B 228 1 15 HELIX 20 20 CYS B 246 ALA B 250 5 5 HELIX 21 21 SER B 253 LEU B 263 1 11 HELIX 22 22 LEU B 263 GLN B 271 1 9 HELIX 23 23 ASP B 273 PHE B 286 1 14 HELIX 24 24 ASP B 295 ARG B 317 1 23 HELIX 25 25 GLY B 323 LEU B 330 1 8 HELIX 26 26 LEU B 331 LEU B 366 1 36 HELIX 27 27 SER C 142 GLN C 155 1 14 HELIX 28 28 SER C 174 LYS C 194 1 21 HELIX 29 29 ILE C 196 GLU C 201 1 6 HELIX 30 30 LEU C 203 HIS C 214 1 12 HELIX 31 31 HIS C 214 MET C 228 1 15 HELIX 32 32 MET C 252 LEU C 263 1 12 HELIX 33 33 LEU C 263 GLN C 271 1 9 HELIX 34 34 ASP C 273 PHE C 286 1 14 HELIX 35 35 ASP C 295 ASP C 316 1 22 HELIX 36 36 GLY C 323 LEU C 330 1 8 HELIX 37 37 LEU C 331 GLU C 344 1 14 HELIX 38 38 GLN C 345 GLY C 353 1 9 HELIX 39 39 MET C 354 ASN C 359 1 6 HELIX 40 40 ASN C 359 MET C 364 1 6 HELIX 41 41 SER D 142 ILE D 156 1 15 HELIX 42 42 SER D 174 TYR D 195 1 22 HELIX 43 43 ILE D 196 GLU D 201 1 6 HELIX 44 44 LEU D 203 HIS D 214 1 12 HELIX 45 45 HIS D 214 MET D 228 1 15 HELIX 46 46 MET D 252 LEU D 263 1 12 HELIX 47 47 LEU D 263 GLN D 271 1 9 HELIX 48 48 ASP D 273 PHE D 286 1 14 HELIX 49 49 ASP D 295 ARG D 317 1 23 HELIX 50 50 GLY D 323 LEU D 330 1 8 HELIX 51 51 LEU D 330 PHE D 352 1 23 HELIX 52 52 ASP D 358 LEU D 366 1 9 SHEET 1 A 2 VAL A 233 LEU A 235 0 SHEET 2 A 2 ILE A 241 PRO A 243 -1 O VAL A 242 N LEU A 234 SHEET 1 B 2 VAL B 233 LEU B 235 0 SHEET 2 B 2 ILE B 241 PRO B 243 -1 O VAL B 242 N LEU B 234 SHEET 1 C 2 VAL C 233 LEU C 235 0 SHEET 2 C 2 ILE C 241 PRO C 243 -1 O VAL C 242 N LEU C 234 SHEET 1 D 2 VAL D 233 LEU D 235 0 SHEET 2 D 2 ILE D 241 PRO D 243 -1 O VAL D 242 N LEU D 234 SITE 1 AC1 6 SER A 181 GLN A 185 ARG A 226 LEU A 236 SITE 2 AC1 6 GLY A 237 MET A 252 SITE 1 AC2 9 HOH B 30 SER B 181 MET B 182 GLN B 185 SITE 2 AC2 9 ARG B 226 LEU B 236 GLY B 237 LEU B 249 SITE 3 AC2 9 MET B 252 SITE 1 AC3 11 HOH C 31 VAL C 178 SER C 181 GLN C 185 SITE 2 AC3 11 ALA C 223 ARG C 226 LEU C 236 GLY C 237 SITE 3 AC3 11 MET C 252 ILE C 259 ILE C 346 SITE 1 AC4 7 SER D 181 GLN D 185 ARG D 226 LEU D 236 SITE 2 AC4 7 GLY D 237 MET D 252 SER D 256 CRYST1 102.288 102.288 227.688 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009776 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004392 0.00000