HEADER ELECTRON TRANSPORT 30-JUL-02 1M9W TITLE STUDY OF ELECTROSTATIC POTENTIAL SURFACE DISTRIBUTION USING HIGH TITLE 2 RESOLUTION SIDE-CHAIN CONFORMATION DETERMINED BY NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASTOCYANIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1143 KEYWDS SIDECHAIN ORIENTATION, CONGEN, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.MONLEON,B.CELDA REVDAT 4 23-FEB-22 1M9W 1 REMARK REVDAT 3 24-FEB-09 1M9W 1 VERSN REVDAT 2 25-SEP-02 1M9W 1 AUTHOR REVDAT 1 14-AUG-02 1M9W 0 JRNL AUTH D.MONLEON,B.CELDA JRNL TITL STUDY OF ELECTROSTATIC POTENTIAL SURFACE DISTRIBUTION OF JRNL TITL 2 WILD-TYPE PLASTOCYANIN SYNECHOCYSTIS SOLUTION STRUCTURE JRNL TITL 3 DETERMINED BY HOMONUCLEAR NMR. JRNL REF BIOPOLYMERS V. 70 212 2003 JRNL REFN ISSN 0006-3525 JRNL PMID 14517909 JRNL DOI 10.1002/BIP.10472 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CONGEN 2.1.2178 REMARK 3 AUTHORS : BRUCCOLERI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M9W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016778. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 303 REMARK 210 PH : 5.4; 5.4 REMARK 210 IONIC STRENGTH : 1; 1 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : PLASTOCYANIN 4MM, 0.5MM TRICINE REMARK 210 -KOH, 5% D2O, SODIUM DITHIONITE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 3.9 REMARK 210 METHOD USED : CONGEN SIMULATED ANNEALING REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 49 HH TYR A 79 1.48 REMARK 500 HG SER A 9 OE1 GLU A 17 1.53 REMARK 500 OD2 ASP A 46 HG1 THR A 80 1.58 REMARK 500 HH TYR A 82 OE2 GLU A 84 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 TYR A 79 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 HIS A 58 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 2 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 PHE A 73 CB - CG - CD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 2 PHE A 73 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 2 TYR A 79 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 3 VAL A 5 CA - CB - CG1 ANGL. DEV. = 9.1 DEGREES REMARK 500 3 PRO A 18 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 3 GLU A 28 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 3 HIS A 39 CB - CG - ND1 ANGL. DEV. = -8.4 DEGREES REMARK 500 3 PHE A 73 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 3 PHE A 73 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 3 TYR A 79 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 3 TYR A 79 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 4 ALA A 62 CB - CA - C ANGL. DEV. = 11.3 DEGREES REMARK 500 4 PHE A 69 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 4 PHE A 69 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 PHE A 73 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 TYR A 79 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 5 HIS A 39 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 5 HIS A 58 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 5 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 5 PHE A 73 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 5 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 5 GLU A 98 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 6 PHE A 73 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 6 TYR A 79 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 6 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 6 VAL A 97 CA - CB - CG2 ANGL. DEV. = 9.5 DEGREES REMARK 500 7 HIS A 39 CB - CG - CD2 ANGL. DEV. = -10.1 DEGREES REMARK 500 7 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 7 TYR A 79 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 7 TYR A 81 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 8 TRP A 31 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 8 HIS A 39 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 8 PHE A 73 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 8 PHE A 73 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 8 TYR A 79 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 8 TYR A 79 CB - CG - CD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 9 HIS A 39 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 9 ASN A 40 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 9 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 9 PHE A 73 CB - CG - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 9 PHE A 73 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 9 TYR A 79 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 9 TYR A 79 CB - CG - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 10 HIS A 58 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 96.47 13.51 REMARK 500 1 LEU A 14 65.28 -68.23 REMARK 500 1 ALA A 25 99.67 -11.59 REMARK 500 1 LYS A 30 52.51 -104.77 REMARK 500 1 LEU A 36 51.33 38.22 REMARK 500 1 SER A 37 151.39 -48.86 REMARK 500 1 ALA A 45 39.75 72.67 REMARK 500 1 THR A 52 1.49 -63.40 REMARK 500 1 SER A 57 154.40 150.74 REMARK 500 1 HIS A 58 15.05 -69.77 REMARK 500 1 LYS A 59 -18.04 -145.03 REMARK 500 2 ASN A 2 77.85 50.40 REMARK 500 2 LEU A 14 64.17 -67.42 REMARK 500 2 ALA A 25 84.20 -61.66 REMARK 500 2 LEU A 36 -66.32 74.22 REMARK 500 2 SER A 37 147.88 66.22 REMARK 500 2 ALA A 45 70.82 63.67 REMARK 500 2 SER A 57 99.12 66.32 REMARK 500 2 HIS A 58 5.32 24.82 REMARK 500 2 LYS A 59 -12.40 -154.72 REMARK 500 2 THR A 72 89.11 -151.38 REMARK 500 3 ASN A 2 91.85 4.16 REMARK 500 3 LEU A 14 70.28 -66.19 REMARK 500 3 ALA A 45 70.11 79.93 REMARK 500 3 SER A 68 172.08 70.27 REMARK 500 4 ASN A 2 78.24 34.47 REMARK 500 4 ALA A 25 87.50 -7.83 REMARK 500 4 GLU A 27 -172.33 -64.19 REMARK 500 4 ASN A 34 -30.95 -147.19 REMARK 500 4 LEU A 36 52.79 37.79 REMARK 500 4 SER A 57 49.44 -1.11 REMARK 500 4 HIS A 58 1.84 50.33 REMARK 500 4 LYS A 59 -11.11 -152.78 REMARK 500 4 THR A 74 52.16 -151.16 REMARK 500 5 ASN A 2 86.92 26.66 REMARK 500 5 LEU A 14 69.70 -69.54 REMARK 500 5 THR A 20 -75.99 -135.04 REMARK 500 5 VAL A 21 160.29 73.29 REMARK 500 5 ALA A 25 100.18 -54.91 REMARK 500 5 LEU A 36 53.33 85.48 REMARK 500 5 ALA A 44 -2.87 -59.15 REMARK 500 5 SER A 57 42.76 -58.11 REMARK 500 5 HIS A 58 -37.01 41.57 REMARK 500 5 THR A 74 44.38 -152.31 REMARK 500 5 PRO A 76 105.35 -51.32 REMARK 500 5 LYS A 94 -62.98 -121.02 REMARK 500 5 VAL A 95 127.94 75.56 REMARK 500 6 ASN A 2 99.03 20.65 REMARK 500 6 LEU A 14 62.90 -67.26 REMARK 500 6 ALA A 25 103.20 -31.16 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 HIS A 39 0.16 SIDE CHAIN REMARK 500 1 TYR A 79 0.19 SIDE CHAIN REMARK 500 1 TYR A 81 0.07 SIDE CHAIN REMARK 500 1 ARG A 87 0.17 SIDE CHAIN REMARK 500 2 HIS A 39 0.18 SIDE CHAIN REMARK 500 2 TYR A 79 0.12 SIDE CHAIN REMARK 500 3 HIS A 39 0.08 SIDE CHAIN REMARK 500 3 TYR A 79 0.17 SIDE CHAIN REMARK 500 3 TYR A 81 0.10 SIDE CHAIN REMARK 500 4 HIS A 39 0.11 SIDE CHAIN REMARK 500 4 HIS A 58 0.10 SIDE CHAIN REMARK 500 4 PHE A 69 0.07 SIDE CHAIN REMARK 500 4 TYR A 79 0.18 SIDE CHAIN REMARK 500 4 ARG A 87 0.12 SIDE CHAIN REMARK 500 5 HIS A 39 0.08 SIDE CHAIN REMARK 500 5 TYR A 79 0.19 SIDE CHAIN REMARK 500 5 TYR A 81 0.10 SIDE CHAIN REMARK 500 6 HIS A 39 0.16 SIDE CHAIN REMARK 500 6 TYR A 79 0.22 SIDE CHAIN REMARK 500 6 TYR A 81 0.07 SIDE CHAIN REMARK 500 7 HIS A 39 0.17 SIDE CHAIN REMARK 500 7 TYR A 81 0.10 SIDE CHAIN REMARK 500 8 HIS A 39 0.15 SIDE CHAIN REMARK 500 8 TYR A 79 0.09 SIDE CHAIN REMARK 500 9 HIS A 39 0.20 SIDE CHAIN REMARK 500 9 TYR A 79 0.14 SIDE CHAIN REMARK 500 9 TYR A 81 0.12 SIDE CHAIN REMARK 500 10 HIS A 39 0.16 SIDE CHAIN REMARK 500 10 TYR A 79 0.27 SIDE CHAIN REMARK 500 10 TYR A 81 0.08 SIDE CHAIN REMARK 500 10 ARG A 87 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1M9W A 1 98 UNP P21697 PLAS_SYNY3 29 126 SEQRES 1 A 98 ALA ASN ALA THR VAL LYS MET GLY SER ASP SER GLY ALA SEQRES 2 A 98 LEU VAL PHE GLU PRO SER THR VAL THR ILE LYS ALA GLY SEQRES 3 A 98 GLU GLU VAL LYS TRP VAL ASN ASN LYS LEU SER PRO HIS SEQRES 4 A 98 ASN ILE VAL PHE ALA ALA ASP GLY VAL ASP ALA ASP THR SEQRES 5 A 98 ALA ALA LYS LEU SER HIS LYS GLY LEU ALA PHE ALA ALA SEQRES 6 A 98 GLY GLU SER PHE THR SER THR PHE THR GLU PRO GLY THR SEQRES 7 A 98 TYR THR TYR TYR CYS GLU PRO HIS ARG GLY ALA GLY MET SEQRES 8 A 98 VAL GLY LYS VAL VAL VAL GLU HELIX 1 1 ALA A 50 ALA A 54 5 5 HELIX 2 2 GLU A 84 GLY A 90 5 7 SHEET 1 A 3 PHE A 16 GLU A 17 0 SHEET 2 A 3 LYS A 6 MET A 7 -1 N LYS A 6 O GLU A 17 SHEET 3 A 3 VAL A 32 ASN A 33 1 O VAL A 32 N MET A 7 SHEET 1 B 4 THR A 20 ILE A 23 0 SHEET 2 B 4 VAL A 92 VAL A 97 1 O VAL A 96 N ILE A 23 SHEET 3 B 4 THR A 78 TYR A 82 -1 N TYR A 79 O VAL A 95 SHEET 4 B 4 VAL A 42 PHE A 43 -1 N VAL A 42 O TYR A 82 SHEET 1 C 2 GLU A 28 VAL A 29 0 SHEET 2 C 2 SER A 71 THR A 72 -1 O SER A 71 N VAL A 29 CISPEP 1 GLU A 17 PRO A 18 1 -2.14 CISPEP 2 SER A 37 PRO A 38 1 -2.02 CISPEP 3 GLU A 17 PRO A 18 2 -2.09 CISPEP 4 SER A 37 PRO A 38 2 -2.22 CISPEP 5 GLU A 17 PRO A 18 3 -2.10 CISPEP 6 SER A 37 PRO A 38 3 -1.97 CISPEP 7 GLU A 17 PRO A 18 4 -2.10 CISPEP 8 SER A 37 PRO A 38 4 -2.04 CISPEP 9 GLU A 17 PRO A 18 5 -2.29 CISPEP 10 SER A 37 PRO A 38 5 0.69 CISPEP 11 GLU A 17 PRO A 18 6 -2.04 CISPEP 12 SER A 37 PRO A 38 6 0.44 CISPEP 13 GLU A 17 PRO A 18 7 -2.08 CISPEP 14 SER A 37 PRO A 38 7 -2.21 CISPEP 15 GLU A 17 PRO A 18 8 -2.07 CISPEP 16 SER A 37 PRO A 38 8 2.04 CISPEP 17 GLU A 17 PRO A 18 9 -2.18 CISPEP 18 SER A 37 PRO A 38 9 -1.92 CISPEP 19 GLU A 17 PRO A 18 10 2.76 CISPEP 20 SER A 37 PRO A 38 10 -2.14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1