HEADER ANTIMICROBIAL PROTEIN 31-JUL-02 1MA6 TITLE TPY4 TACHYPLESIN I TYROSINE MUTANT IN THE PRESENCE OF TITLE 2 DODECYLPHOSPHOCHOLINE MICELLES (300 MM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TACHYPLESIN I; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED USING FMOC SOURCE 4 SOLID STATE SYNTHESIS. THE SEQUENCE OF THE PEPTIDE IS NATURALLY SOURCE 5 FOUND IN TACHYPLEUS TRIDENTATUS (JAPANESE HORESHOE CRAB). KEYWDS TACHYPLESIN I, TPY4, DODECYLPHOSPHOCHOLINE, MICELLE, BETA HAIRPIN, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 31 MDLTYP MINIMIZED AVERAGE AUTHOR A.LAEDERACH,A.H.ANDREOTTI,D.B.FULTON REVDAT 3 27-OCT-21 1MA6 1 REMARK SEQADV REVDAT 2 24-FEB-09 1MA6 1 VERSN REVDAT 1 16-OCT-02 1MA6 0 JRNL AUTH A.LAEDERACH,A.H.ANDREOTTI,D.B.FULTON JRNL TITL SOLUTION AND MICELLE-BOUND STRUCTURES OF TACHYPLESIN I AND JRNL TITL 2 ITS ACTIVE LINEAR DERIVATIVES JRNL REF BIOCHEMISTRY V. 41 12359 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12369825 JRNL DOI 10.1021/BI026185Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0, CNS 1.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, DELANO, GROS, GROSSE REMARK 3 -KUNSTLEVE, JIANG, KUSZEWSKI, NILGES, PANNU, READ, REMARK 3 RICE, SIMONSON, WARREN (CNS), BRUNGER, ADAMS, REMARK 3 CLORE, DELANO, GROS, GROSSE-KUNSTLEVE, JIANG, REMARK 3 KUSZEWSKI, NILGES, PANNU, READ, RICE, SIMONSON, REMARK 3 WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MA6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016788. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : 0.15% REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : TPY4 MUTANT OF TACHYPLESIN I 1MM REMARK 210 300 MM DODECYLPHOSPHOCHOLINE REMARK 210 (D38) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 6.1 REMARK 210 METHOD USED : SIMULATED ANNEALING WITH REMARK 210 COMPLETE CROSS VALIDATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. A TEMPERATURE OF 313K WAS USED TO REDUCE REMARK 210 SPECTRAL OVERLAP. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 2 -80.10 -57.48 REMARK 500 1 TYR A 3 -142.05 -121.39 REMARK 500 1 PHE A 4 -34.90 -24.83 REMARK 500 1 VAL A 6 70.24 35.14 REMARK 500 1 TYR A 7 14.08 -146.28 REMARK 500 1 TYR A 8 -89.29 -139.54 REMARK 500 1 ARG A 9 116.41 103.54 REMARK 500 2 TRP A 2 -105.66 -82.63 REMARK 500 2 TYR A 3 -111.77 -142.77 REMARK 500 2 PHE A 4 55.23 -66.52 REMARK 500 2 ARG A 5 36.92 175.38 REMARK 500 2 VAL A 6 70.58 -69.98 REMARK 500 2 TYR A 8 -76.75 -135.42 REMARK 500 2 ARG A 9 128.44 96.90 REMARK 500 2 ARG A 14 -83.31 -115.15 REMARK 500 2 ARG A 15 -86.12 24.44 REMARK 500 2 TYR A 16 166.93 57.69 REMARK 500 3 TRP A 2 -97.05 -53.41 REMARK 500 3 TYR A 3 -127.12 -122.55 REMARK 500 3 VAL A 6 66.72 22.87 REMARK 500 3 TYR A 7 23.74 -153.32 REMARK 500 3 TYR A 8 -94.41 -137.62 REMARK 500 3 ARG A 9 -61.91 -160.38 REMARK 500 3 ILE A 11 -76.31 -25.24 REMARK 500 3 TYR A 16 119.28 60.54 REMARK 500 4 TRP A 2 -14.20 69.69 REMARK 500 4 TYR A 3 -79.39 -141.27 REMARK 500 4 PHE A 4 64.11 -65.07 REMARK 500 4 ARG A 5 -46.63 170.76 REMARK 500 4 VAL A 6 69.39 36.65 REMARK 500 4 TYR A 7 13.45 -152.01 REMARK 500 4 ARG A 9 72.46 -176.43 REMARK 500 4 ILE A 11 -74.09 -35.40 REMARK 500 4 TYR A 12 -28.93 168.05 REMARK 500 4 TYR A 16 171.78 -46.93 REMARK 500 5 TYR A 3 -150.70 125.08 REMARK 500 5 PHE A 4 78.97 -12.91 REMARK 500 5 ARG A 5 -51.11 155.60 REMARK 500 5 VAL A 6 66.72 34.73 REMARK 500 5 TYR A 7 11.84 -149.74 REMARK 500 5 ARG A 9 -25.36 -151.66 REMARK 500 5 ARG A 15 -75.03 -45.16 REMARK 500 5 TYR A 16 -66.64 68.11 REMARK 500 6 TRP A 2 -103.26 -68.43 REMARK 500 6 TYR A 3 -37.89 -146.79 REMARK 500 6 VAL A 6 29.52 39.91 REMARK 500 6 TYR A 8 -78.93 -161.74 REMARK 500 6 ARG A 9 -153.33 115.22 REMARK 500 6 TYR A 16 150.15 -45.52 REMARK 500 7 TRP A 2 -102.41 -77.70 REMARK 500 REMARK 500 THIS ENTRY HAS 243 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MA2 RELATED DB: PDB REMARK 900 TACHYPLESIN I SOLUTION STRUCTURE IN WATER REMARK 900 RELATED ID: 1MA4 RELATED DB: PDB REMARK 900 TPY4 SOLUTION STRUCTURE IN WATER REMARK 900 RELATED ID: 1MA5 RELATED DB: PDB REMARK 900 TACHYPLESIN I IN THE PRESENCE OF 300 MM DODECYLPHOSPHOCHOLINE REMARK 900 MICELLES DBREF 1MA6 A 1 17 UNP P14213 TAC1_TACTR 24 40 SEQADV 1MA6 TYR A 3 UNP P14213 CYS 26 ENGINEERED MUTATION SEQADV 1MA6 TYR A 7 UNP P14213 CYS 30 ENGINEERED MUTATION SEQADV 1MA6 TYR A 12 UNP P14213 CYS 35 ENGINEERED MUTATION SEQADV 1MA6 TYR A 16 UNP P14213 CYS 39 ENGINEERED MUTATION SEQRES 1 A 17 LYS TRP TYR PHE ARG VAL TYR TYR ARG GLY ILE TYR TYR SEQRES 2 A 17 ARG ARG TYR ARG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1