HEADER SIGNALING PROTEIN 05-AUG-02 1MC7 TITLE SOLUTION STRUCTURE OF MDVL1 PDZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: DISHEVELLED-1, DSH HOMOLOG 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PDZ DOMAIN, WNT SIGNALING, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.-C.WONG,A.BOURDELAS,Y.SHAO,D.WU,D.L.SHI,J.ZHENG REVDAT 5 22-MAY-24 1MC7 1 REMARK REVDAT 4 27-OCT-21 1MC7 1 REMARK SEQADV REVDAT 3 24-FEB-09 1MC7 1 VERSN REVDAT 2 16-DEC-03 1MC7 1 JRNL REVDAT 1 23-SEP-03 1MC7 0 JRNL AUTH H.-C.WONG,A.BOURDELAS,A.KRAUSS,H.-J.LEE,Y.SHAO,D.WU, JRNL AUTH 2 M.MLODZIK,D.-L.SHI,J.ZHENG JRNL TITL DIRECT BINDING OF THE PDZ DOMAIN OF DISHEVELLED TO A JRNL TITL 2 CONSERVED INTERNAL SEQUENCE IN THE C-TERMINAL REGION OF JRNL TITL 3 FRIZZLED JRNL REF MOL.CELL V. 12 1251 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 14636582 JRNL DOI 10.1016/S1097-2765(03)00427-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA, DYANA REMARK 3 AUTHORS : GUNTERT (DYANA), GUNTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1190 RESTRAINTS: 1124 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 44 ARE DIHEDRAL ANGLE RESTRAINTS AND 22 ARE REMARK 3 DISTANCE RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 1MC7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016817. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM MDVL1 PDZ DOMAIN U-15N, 13C, REMARK 210 100MM PHOSPHATE BUFFER PH 7.5, REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XEASY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 320 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 53 H THR A 84 1.51 REMARK 500 O VAL A 68 H ARG A 72 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 6 125.78 60.55 REMARK 500 1 GLU A 7 -47.31 -158.26 REMARK 500 1 HIS A 9 -60.95 78.83 REMARK 500 1 HIS A 10 173.35 -48.35 REMARK 500 1 GLN A 19 -64.60 -164.44 REMARK 500 1 SER A 20 140.81 164.82 REMARK 500 1 ASP A 22 -51.42 -175.12 REMARK 500 1 ARG A 23 115.90 -162.14 REMARK 500 1 ASP A 25 122.22 162.51 REMARK 500 1 ALA A 38 -88.34 -85.21 REMARK 500 1 ILE A 45 163.08 -41.85 REMARK 500 1 MET A 50 48.40 79.56 REMARK 500 1 ASN A 55 -141.31 39.84 REMARK 500 1 MET A 62 -83.15 -61.92 REMARK 500 1 SER A 63 54.03 36.60 REMARK 500 1 ASP A 65 25.26 46.04 REMARK 500 1 ASP A 66 29.46 -162.87 REMARK 500 1 ILE A 74 -91.76 -68.92 REMARK 500 1 VAL A 75 -37.33 -36.35 REMARK 500 1 GLN A 77 -134.05 -133.16 REMARK 500 1 THR A 78 160.22 -41.06 REMARK 500 1 SER A 82 45.65 156.85 REMARK 500 1 LEU A 83 146.30 -32.34 REMARK 500 1 ALA A 86 42.17 -92.75 REMARK 500 1 LYS A 87 171.16 54.22 REMARK 500 1 ALA A 88 118.76 179.50 REMARK 500 1 TRP A 89 101.64 -43.11 REMARK 500 1 ARG A 94 52.47 28.26 REMARK 500 2 MET A 6 170.67 60.88 REMARK 500 2 ARG A 8 94.09 43.86 REMARK 500 2 HIS A 9 105.39 -177.11 REMARK 500 2 LEU A 12 147.02 73.51 REMARK 500 2 GLN A 19 -55.68 -173.85 REMARK 500 2 SER A 20 89.57 44.72 REMARK 500 2 ASP A 25 90.27 45.44 REMARK 500 2 SER A 32 161.93 179.93 REMARK 500 2 MET A 34 83.13 -57.44 REMARK 500 2 LYS A 35 144.55 -39.28 REMARK 500 2 ALA A 38 -74.71 -86.34 REMARK 500 2 ARG A 44 54.55 35.33 REMARK 500 2 ILE A 45 164.90 -43.30 REMARK 500 2 MET A 50 50.72 80.78 REMARK 500 2 ASN A 55 -141.15 38.52 REMARK 500 2 GLU A 60 -75.48 -65.01 REMARK 500 2 MET A 62 -82.69 -56.69 REMARK 500 2 SER A 63 49.95 33.64 REMARK 500 2 ASP A 65 30.94 38.85 REMARK 500 2 ASP A 66 31.25 -166.62 REMARK 500 2 ILE A 74 -92.60 -66.71 REMARK 500 2 VAL A 75 -38.70 -38.58 REMARK 500 REMARK 500 THIS ENTRY HAS 613 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1MC7 A 1 95 UNP P51141 DVL1_MOUSE 251 345 SEQADV 1MC7 ALA A 88 UNP P51141 CYS 338 ENGINEERED MUTATION SEQRES 1 A 95 THR VAL THR LEU ASN MET GLU ARG HIS HIS PHE LEU GLY SEQRES 2 A 95 ILE SER ILE VAL GLY GLN SER ASN ASP ARG GLY ASP GLY SEQRES 3 A 95 GLY ILE TYR ILE GLY SER ILE MET LYS GLY GLY ALA VAL SEQRES 4 A 95 ALA ALA ASP GLY ARG ILE GLU PRO GLY ASP MET LEU LEU SEQRES 5 A 95 GLN VAL ASN ASP VAL ASN PHE GLU ASN MET SER ASN ASP SEQRES 6 A 95 ASP ALA VAL ARG VAL LEU ARG GLU ILE VAL SER GLN THR SEQRES 7 A 95 GLY PRO ILE SER LEU THR VAL ALA LYS ALA TRP ASP PRO SEQRES 8 A 95 THR PRO ARG SER HELIX 1 1 ALA A 38 GLY A 43 1 6 HELIX 2 2 GLU A 46 ASP A 49 5 4 HELIX 3 3 ALA A 67 GLN A 77 1 11 SHEET 1 A 2 ILE A 14 VAL A 17 0 SHEET 2 A 2 TYR A 29 ILE A 33 -1 O GLY A 31 N SER A 15 SHEET 1 B 2 LEU A 51 VAL A 54 0 SHEET 2 B 2 LEU A 83 VAL A 85 -1 O THR A 84 N GLN A 53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1