HEADER HYDROLASE 06-AUG-02 1MC8 TITLE CRYSTAL STRUCTURE OF FLAP ENDONUCLEASE-1 R42E MUTANT FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAP ENDONUCLEASE-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 5' NUCLEASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS FLEXIBLE LOOP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MATSUI,K.V.MUSTI,J.ABE,K.YAMAZAKI,I.MATSUI,K.HARATA REVDAT 4 25-OCT-23 1MC8 1 REMARK REVDAT 3 10-NOV-21 1MC8 1 SEQADV REVDAT 2 24-FEB-09 1MC8 1 VERSN REVDAT 1 16-OCT-02 1MC8 0 JRNL AUTH E.MATSUI,K.V.MUSTI,J.ABE,K.YAMAZAKI,I.MATSUI,K.HARATA JRNL TITL MOLECULAR STRUCTURE AND NOVEL DNA BINDING SITES LOCATED IN JRNL TITL 2 LOOPS OF FLAP ENDONUCLEASE-1 FROM PYROCOCCUS HORIKOSHII JRNL REF J.BIOL.CHEM. V. 277 37840 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12147694 JRNL DOI 10.1074/JBC.M205235200 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1339 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE : 0.4580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 76 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15903 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1A76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, SODIUM CHLORIDE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.23000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 333 REMARK 465 LEU A 334 REMARK 465 GLU A 335 REMARK 465 SER A 336 REMARK 465 TRP A 337 REMARK 465 PHE A 338 REMARK 465 VAL A 339 REMARK 465 LYS A 340 REMARK 465 LYS A 341 REMARK 465 LYS A 342 REMARK 465 PRO A 343 REMARK 465 MET B 1 REMARK 465 THR B 333 REMARK 465 LEU B 334 REMARK 465 GLU B 335 REMARK 465 SER B 336 REMARK 465 TRP B 337 REMARK 465 PHE B 338 REMARK 465 VAL B 339 REMARK 465 LYS B 340 REMARK 465 LYS B 341 REMARK 465 LYS B 342 REMARK 465 PRO B 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 57 NE2 HIS A 57 CD2 -0.073 REMARK 500 HIS A 308 NE2 HIS A 308 CD2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 63 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 LYS A 104 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 TRP A 105 CA - CB - CG ANGL. DEV. = 13.1 DEGREES REMARK 500 TRP A 105 CD1 - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TRP A 105 CB - CG - CD1 ANGL. DEV. = -9.3 DEGREES REMARK 500 TRP A 105 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 105 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 LYS A 106 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 LYS A 106 N - CA - C ANGL. DEV. = -22.2 DEGREES REMARK 500 LEU A 109 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 118 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG A 123 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 VAL A 127 CA - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG A 186 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LYS A 199 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 ASP A 200 N - CA - C ANGL. DEV. = -20.9 DEGREES REMARK 500 ILE A 205 CA - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 VAL A 215 CG1 - CB - CG2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PRO A 239 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 LEU A 290 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 TRP A 292 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 292 CB - CG - CD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 TRP A 292 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP A 292 CG - CD2 - CE3 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ILE A 319 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 321 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 330 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 330 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 330 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 GLN A 331 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 VAL B 9 N - CA - CB ANGL. DEV. = -15.7 DEGREES REMARK 500 ARG B 11 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 11 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 GLU B 13 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 TYR B 20 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 TYR B 20 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR B 33 CA - CB - CG ANGL. DEV. = -11.4 DEGREES REMARK 500 TYR B 77 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 PRO B 84 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 LYS B 87 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG B 88 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 95 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 98 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 72 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 4 23.38 -71.06 REMARK 500 ASP A 7 -8.63 -57.45 REMARK 500 LYS A 12 -163.99 -123.43 REMARK 500 GLU A 13 -152.88 -110.99 REMARK 500 ILE A 14 171.98 163.77 REMARK 500 LEU A 16 42.90 -81.79 REMARK 500 SER A 50 -39.77 -37.38 REMARK 500 THR A 55 -2.53 -144.93 REMARK 500 GLU A 85 61.39 63.10 REMARK 500 PHE A 86 2.34 -69.25 REMARK 500 LYS A 89 -72.93 -70.23 REMARK 500 GLU A 90 -10.98 38.50 REMARK 500 LEU A 91 23.44 -149.15 REMARK 500 GLU A 92 -89.44 49.29 REMARK 500 GLU A 96 62.44 19.25 REMARK 500 ARG A 98 79.68 -43.93 REMARK 500 GLU A 102 -64.56 52.01 REMARK 500 LEU A 103 39.76 -80.24 REMARK 500 LYS A 104 -115.85 -109.25 REMARK 500 LYS A 106 -72.58 -137.13 REMARK 500 LYS A 119 2.13 -49.20 REMARK 500 TYR A 120 -77.34 -98.66 REMARK 500 ALA A 121 -47.55 -26.12 REMARK 500 GLN A 122 41.80 -73.59 REMARK 500 ARG A 123 -70.16 -120.16 REMARK 500 ALA A 124 17.84 -146.65 REMARK 500 THR A 125 -121.53 -164.56 REMARK 500 LYS A 126 62.90 7.65 REMARK 500 SER A 151 -128.31 -114.42 REMARK 500 SER A 162 22.16 -76.44 REMARK 500 LYS A 163 54.16 -169.98 REMARK 500 ASN A 187 5.38 86.01 REMARK 500 ARG A 194 54.98 -54.25 REMARK 500 LYS A 195 -79.42 -123.33 REMARK 500 PRO A 197 -151.73 -130.44 REMARK 500 LYS A 199 -80.36 -104.11 REMARK 500 LYS A 220 71.40 18.86 REMARK 500 ARG A 223 -46.86 -24.70 REMARK 500 ASN A 238 81.92 -158.48 REMARK 500 PRO A 239 24.85 -63.02 REMARK 500 LYS A 243 118.71 -26.49 REMARK 500 VAL A 254 -71.18 -71.02 REMARK 500 ARG A 255 -53.99 -24.10 REMARK 500 ASP A 259 85.19 59.00 REMARK 500 PHE A 264 -125.84 -100.18 REMARK 500 GLN A 265 -59.09 51.44 REMARK 500 SER A 268 109.97 -36.64 REMARK 500 ASP A 269 -160.04 -161.49 REMARK 500 LEU A 272 -27.69 -31.96 REMARK 500 ASN A 281 50.20 -113.32 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 82 PRO B 83 146.62 REMARK 500 PRO B 83 PRO B 84 114.50 REMARK 500 MET B 196 PRO B 197 -143.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 20 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MC8 A 1 343 UNP O50123 FEN_PYRHO 1 343 DBREF 1MC8 B 1 343 UNP O50123 FEN_PYRHO 1 343 SEQADV 1MC8 GLU A 42 UNP O50123 ARG 42 ENGINEERED MUTATION SEQADV 1MC8 GLU B 42 UNP O50123 ARG 42 ENGINEERED MUTATION SEQRES 1 A 343 MET GLY VAL PRO ILE GLY ASP LEU VAL PRO ARG LYS GLU SEQRES 2 A 343 ILE ASP LEU GLU ASN LEU TYR GLY LYS LYS ILE ALA ILE SEQRES 3 A 343 ASP ALA LEU ASN ALA ILE TYR GLN PHE LEU SER THR ILE SEQRES 4 A 343 ARG GLN GLU ASP GLY THR PRO LEU MET ASP SER LYS GLY SEQRES 5 A 343 ARG ILE THR SER HIS LEU SER GLY LEU PHE TYR ARG THR SEQRES 6 A 343 ILE ASN LEU MET GLU ALA GLY ILE LYS PRO ALA TYR VAL SEQRES 7 A 343 PHE ASP GLY LYS PRO PRO GLU PHE LYS ARG LYS GLU LEU SEQRES 8 A 343 GLU LYS ARG ARG GLU ALA ARG GLU GLU ALA GLU LEU LYS SEQRES 9 A 343 TRP LYS GLU ALA LEU ALA LYS GLY ASN LEU GLU GLU ALA SEQRES 10 A 343 ARG LYS TYR ALA GLN ARG ALA THR LYS VAL ASN GLU MET SEQRES 11 A 343 LEU ILE GLU ASP ALA LYS LYS LEU LEU GLN LEU MET GLY SEQRES 12 A 343 ILE PRO ILE ILE GLN ALA PRO SER GLU GLY GLU ALA GLN SEQRES 13 A 343 ALA ALA TYR MET ALA SER LYS GLY ASP VAL TYR ALA SER SEQRES 14 A 343 ALA SER GLN ASP TYR ASP SER LEU LEU PHE GLY ALA PRO SEQRES 15 A 343 ARG LEU ILE ARG ASN LEU THR ILE THR GLY LYS ARG LYS SEQRES 16 A 343 MET PRO GLY LYS ASP VAL TYR VAL GLU ILE LYS PRO GLU SEQRES 17 A 343 LEU VAL VAL LEU ASP GLU VAL LEU LYS GLU LEU LYS ILE SEQRES 18 A 343 THR ARG GLU LYS LEU ILE GLU LEU ALA ILE LEU VAL GLY SEQRES 19 A 343 THR ASP TYR ASN PRO GLY GLY VAL LYS GLY ILE GLY PRO SEQRES 20 A 343 LYS LYS ALA LEU GLU ILE VAL ARG TYR SER ARG ASP PRO SEQRES 21 A 343 LEU ALA LYS PHE GLN ARG GLN SER ASP VAL ASP LEU TYR SEQRES 22 A 343 ALA ILE LYS GLU PHE PHE LEU ASN PRO PRO VAL THR ASN SEQRES 23 A 343 GLU TYR SER LEU SER TRP LYS GLU PRO ASP GLU GLU GLY SEQRES 24 A 343 ILE LEU LYS PHE LEU CYS ASP GLU HIS ASN PHE SER GLU SEQRES 25 A 343 GLU ARG VAL LYS ASN GLY ILE GLU ARG LEU LYS LYS ALA SEQRES 26 A 343 ILE LYS ALA GLY ARG GLN SER THR LEU GLU SER TRP PHE SEQRES 27 A 343 VAL LYS LYS LYS PRO SEQRES 1 B 343 MET GLY VAL PRO ILE GLY ASP LEU VAL PRO ARG LYS GLU SEQRES 2 B 343 ILE ASP LEU GLU ASN LEU TYR GLY LYS LYS ILE ALA ILE SEQRES 3 B 343 ASP ALA LEU ASN ALA ILE TYR GLN PHE LEU SER THR ILE SEQRES 4 B 343 ARG GLN GLU ASP GLY THR PRO LEU MET ASP SER LYS GLY SEQRES 5 B 343 ARG ILE THR SER HIS LEU SER GLY LEU PHE TYR ARG THR SEQRES 6 B 343 ILE ASN LEU MET GLU ALA GLY ILE LYS PRO ALA TYR VAL SEQRES 7 B 343 PHE ASP GLY LYS PRO PRO GLU PHE LYS ARG LYS GLU LEU SEQRES 8 B 343 GLU LYS ARG ARG GLU ALA ARG GLU GLU ALA GLU LEU LYS SEQRES 9 B 343 TRP LYS GLU ALA LEU ALA LYS GLY ASN LEU GLU GLU ALA SEQRES 10 B 343 ARG LYS TYR ALA GLN ARG ALA THR LYS VAL ASN GLU MET SEQRES 11 B 343 LEU ILE GLU ASP ALA LYS LYS LEU LEU GLN LEU MET GLY SEQRES 12 B 343 ILE PRO ILE ILE GLN ALA PRO SER GLU GLY GLU ALA GLN SEQRES 13 B 343 ALA ALA TYR MET ALA SER LYS GLY ASP VAL TYR ALA SER SEQRES 14 B 343 ALA SER GLN ASP TYR ASP SER LEU LEU PHE GLY ALA PRO SEQRES 15 B 343 ARG LEU ILE ARG ASN LEU THR ILE THR GLY LYS ARG LYS SEQRES 16 B 343 MET PRO GLY LYS ASP VAL TYR VAL GLU ILE LYS PRO GLU SEQRES 17 B 343 LEU VAL VAL LEU ASP GLU VAL LEU LYS GLU LEU LYS ILE SEQRES 18 B 343 THR ARG GLU LYS LEU ILE GLU LEU ALA ILE LEU VAL GLY SEQRES 19 B 343 THR ASP TYR ASN PRO GLY GLY VAL LYS GLY ILE GLY PRO SEQRES 20 B 343 LYS LYS ALA LEU GLU ILE VAL ARG TYR SER ARG ASP PRO SEQRES 21 B 343 LEU ALA LYS PHE GLN ARG GLN SER ASP VAL ASP LEU TYR SEQRES 22 B 343 ALA ILE LYS GLU PHE PHE LEU ASN PRO PRO VAL THR ASN SEQRES 23 B 343 GLU TYR SER LEU SER TRP LYS GLU PRO ASP GLU GLU GLY SEQRES 24 B 343 ILE LEU LYS PHE LEU CYS ASP GLU HIS ASN PHE SER GLU SEQRES 25 B 343 GLU ARG VAL LYS ASN GLY ILE GLU ARG LEU LYS LYS ALA SEQRES 26 B 343 ILE LYS ALA GLY ARG GLN SER THR LEU GLU SER TRP PHE SEQRES 27 B 343 VAL LYS LYS LYS PRO HELIX 1 1 PRO A 4 VAL A 9 5 6 HELIX 2 2 ALA A 28 ILE A 39 1 12 HELIX 3 3 THR A 55 GLY A 72 1 18 HELIX 4 4 ALA A 108 GLY A 112 5 5 HELIX 5 5 ASN A 128 GLY A 143 1 16 HELIX 6 6 GLU A 152 SER A 162 1 11 HELIX 7 7 TYR A 174 PHE A 179 1 6 HELIX 8 8 ASN A 187 THR A 191 5 5 HELIX 9 9 LEU A 212 GLU A 218 1 7 HELIX 10 10 THR A 222 GLY A 234 1 13 HELIX 11 11 GLY A 246 TYR A 256 1 11 HELIX 12 12 PRO A 260 PHE A 264 5 5 HELIX 13 13 LEU A 272 ASN A 281 1 10 HELIX 14 14 ASP A 296 CYS A 305 1 10 HELIX 15 15 SER A 311 ALA A 328 1 18 HELIX 16 16 ASP B 15 TYR B 20 5 6 HELIX 17 17 ALA B 28 ILE B 39 1 12 HELIX 18 18 THR B 55 GLU B 70 1 16 HELIX 19 19 GLU B 102 GLU B 107 1 6 HELIX 20 20 ARG B 118 ARG B 123 1 6 HELIX 21 21 GLU B 129 MET B 142 1 14 HELIX 22 22 GLU B 152 LYS B 163 1 12 HELIX 23 23 TYR B 174 PHE B 179 1 6 HELIX 24 24 ASN B 187 THR B 191 5 5 HELIX 25 25 LEU B 212 LYS B 220 1 9 HELIX 26 26 THR B 222 GLY B 234 1 13 HELIX 27 27 GLY B 246 SER B 257 1 12 HELIX 28 28 PRO B 260 ARG B 266 1 7 HELIX 29 29 ASP B 271 ASN B 281 1 11 HELIX 30 30 ASP B 296 ASP B 306 1 11 HELIX 31 31 SER B 311 ARG B 330 1 20 SHEET 1 A 3 LYS A 74 VAL A 78 0 SHEET 2 A 3 LYS A 23 ASP A 27 1 N ILE A 26 O ALA A 76 SHEET 3 A 3 SER A 169 ALA A 170 1 O ALA A 170 N ALA A 25 SHEET 1 B 2 ARG A 40 GLN A 41 0 SHEET 2 B 2 THR A 45 PRO A 46 -1 O THR A 45 N GLN A 41 SHEET 1 C 2 ARG A 183 ARG A 186 0 SHEET 2 C 2 GLU A 208 VAL A 211 -1 O GLU A 208 N ARG A 186 SHEET 1 D 7 LYS B 12 GLU B 13 0 SHEET 2 D 7 GLU B 208 VAL B 211 -1 O LEU B 209 N LYS B 12 SHEET 3 D 7 ARG B 183 ILE B 185 -1 N LEU B 184 O VAL B 210 SHEET 4 D 7 ALA B 168 ALA B 170 1 N SER B 169 O ARG B 183 SHEET 5 D 7 LYS B 23 ASP B 27 1 N ALA B 25 O ALA B 170 SHEET 6 D 7 LYS B 74 VAL B 78 1 O ALA B 76 N ILE B 26 SHEET 7 D 7 ILE B 146 ILE B 147 1 O ILE B 147 N TYR B 77 CRYST1 62.670 62.670 180.690 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015957 0.009213 0.000000 0.00000 SCALE2 0.000000 0.018425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005534 0.00000