HEADER IMMUNOGLOBULIN 09-JUL-84 1MCP TITLE PHOSPHOCHOLINE BINDING IMMUNOGLOBULIN FAB MC/PC603. AN X-RAY TITLE 2 DIFFRACTION STUDY AT 2.7 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGA-KAPPA MCPC603 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGA-KAPPA MCPC603 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SATOW,G.H.COHEN,E.A.PADLAN,D.R.DAVIES REVDAT 8 13-NOV-24 1MCP 1 REMARK REVDAT 7 26-JUL-23 1MCP 1 REMARK SEQADV SSBOND SCALE REVDAT 7 2 1 ATOM REVDAT 6 13-JUL-11 1MCP 1 VERSN REVDAT 5 24-FEB-09 1MCP 1 VERSN REVDAT 4 01-APR-03 1MCP 1 JRNL REVDAT 3 15-JUL-92 1MCP 1 REMARK REVDAT 2 16-JUL-87 1MCP 1 JRNL REVDAT 1 02-JAN-85 1MCP 0 JRNL AUTH Y.SATOW,G.H.COHEN,E.A.PADLAN,D.R.DAVIES JRNL TITL PHOSPHOCHOLINE BINDING IMMUNOGLOBULIN FAB MCPC603. AN X-RAY JRNL TITL 2 DIFFRACTION STUDY AT 2.7 A. JRNL REF J.MOL.BIOL. V. 190 593 1986 JRNL REFN ISSN 0022-2836 JRNL PMID 3097327 JRNL DOI 10.1016/0022-2836(86)90245-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.RUDIKOFF,Y.SATOW,E.PADLAN,D.DAVIES,M.POTTER REMARK 1 TITL KAPPA CHAIN STRUCTURE FROM A CRYSTALLIZED MURINE FAB(PRIME). REMARK 1 TITL 2 ROLE OF JOINING SEGMENT IN HAPTEN BINDING REMARK 1 REF MOL.IMMUNOL. V. 18 705 1981 REMARK 1 REFN ISSN 0161-5890 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.R.DAVIES,E.A.PADLAN,D.M.SEGAL REMARK 1 TITL IMMUNOGLOBULIN STRUCTURES AT HIGH RESOLUTION REMARK 1 REF CONTEMP.TOP.MOL.IMMUNOL. V. 4 127 1975 REMARK 1 REFN ISSN 0090-8800 REMARK 1 REFERENCE 3 REMARK 1 AUTH E.A.PADLAN,D.M.SEGAL,G.H.COHEN,D.R.DAVIES,S.RUDIKOFF, REMARK 1 AUTH 2 M.POTTER REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF THE ANTIGEN BINDING SITE REMARK 1 TITL 2 OF MC/PC 603 PROTEIN REMARK 1 EDIT E.E.SERCARZ, A.R.WILLIAMSON, C.F.COX REMARK 1 REF THE IMMUNE SYSTEM. 7 1974 REMARK 1 REF 2 GENES,RECEPTORS,SIGNALS. REMARK 1 REF 3 PROCEEDINGS OF THE 1974 REMARK 1 REF 4 I.C.N.-U.C.L.A. SYMPOSIUM ON REMARK 1 REF 5 MOLECULAR BIOLOGY REMARK 1 PUBL ACADEMIC PRESS,NEW YORK REMARK 1 REFN REMARK 1 REFERENCE 4 REMARK 1 AUTH D.M.SEGAL,E.A.PADLAN,G.H.COHEN,S.RUDIKOFF,M.POTTER, REMARK 1 AUTH 2 D.R.DAVIES REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF A REMARK 1 TITL 2 PHOSPHORYLCHOLINE-BINDING MOUSE IMMUNOGLOBULIN FAB AND THE REMARK 1 TITL 3 NATURE OF THE ANTIGEN BINDING SITE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 71 4298 1974 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 5 REMARK 1 AUTH E.A.PADLAN,D.M.SEGAL,T.F.SPANDE,D.R.DAVIES,S.RUDIKOFF, REMARK 1 AUTH 2 M.POTTER REMARK 1 TITL STRUCTURE AT 4.5 ANGSTROMS RESOLUTION OF A REMARK 1 TITL 2 PHOSPHORYLCHOLINE-BINDING FAB REMARK 1 REF NATURE NEW BIOL. V. 245 167 1973 REMARK 1 REFN ISSN 0369-4887 REMARK 1 REFERENCE 6 REMARK 1 AUTH S.RUDIKOFF,M.POTTER,D.M.SEGAL,E.A.PADLAN,D.R.DAVIES REMARK 1 TITL CRYSTALS OF PHOSPHORYLCHOLINE-BINDING FAB-FRAGMENTS FROM REMARK 1 TITL 2 MOUSE MYELOMA PROTEINS. PREPARATION AND X-RAY ANALYSIS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 69 3689 1972 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3401 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 3.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.35950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.35950 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.35950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS L 195 ND2 ASN L 218 1.93 REMARK 500 O GLY H 8 CD2 LEU H 20 2.07 REMARK 500 NH1 ARG L 67 OD2 ASP L 88 2.09 REMARK 500 OH TYR L 42 NE2 GLN L 95 2.13 REMARK 500 OD2 ASP L 176 OG1 THR L 178 2.14 REMARK 500 NH2 ARG H 38 OE2 GLU H 46 2.15 REMARK 500 O ILE L 156 O SER L 197 2.15 REMARK 500 N ALA L 202 O ILE L 211 2.16 REMARK 500 O ASN H 53 N GLY H 55 2.19 REMARK 500 NZ LYS L 153 CD ARG L 161 2.19 REMARK 500 O LEU L 131 N SER L 133 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR L 132 NH2 ARG H 19 4665 1.05 REMARK 500 O ALA L 15 OE2 GLU H 1 2665 1.22 REMARK 500 OG1 THR L 132 CZ ARG H 19 4665 1.34 REMARK 500 CB THR L 132 NH2 ARG H 19 4665 1.41 REMARK 500 O HOH H 230 O HOH H 329 4664 1.58 REMARK 500 CA THR L 132 NH2 ARG H 19 4665 1.89 REMARK 500 O ALA L 15 CD GLU H 1 2665 1.91 REMARK 500 C ALA L 15 OE2 GLU H 1 2665 1.94 REMARK 500 O THR L 132 NH2 ARG H 19 4665 1.98 REMARK 500 OG1 THR L 132 NE ARG H 19 4665 1.99 REMARK 500 O THR L 132 NH1 ARG H 19 4665 2.01 REMARK 500 O THR L 132 CZ ARG H 19 4665 2.03 REMARK 500 NH1 ARG L 18 OE1 GLU L 61 2665 2.09 REMARK 500 C THR L 132 NH1 ARG H 19 4665 2.16 REMARK 500 C THR L 132 NH2 ARG H 19 4665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY H 42 N GLY H 42 CA 0.105 REMARK 500 SER H 105 CB SER H 105 OG 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE L 2 CB - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 ILE L 2 CA - CB - CG1 ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG L 18 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LYS L 24 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 ASN L 37 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 GLY L 56 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 GLY L 56 CA - C - O ANGL. DEV. = -12.3 DEGREES REMARK 500 ALA L 57 CB - CA - C ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG L 60 CD - NE - CZ ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG L 60 NH1 - CZ - NH2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG L 60 NE - CZ - NH2 ANGL. DEV. = 8.8 DEGREES REMARK 500 GLU L 61 CG - CD - OE1 ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG L 67 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP L 76 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 GLU L 87 OE1 - CD - OE2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP L 88 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 LYS L 109 CA - CB - CG ANGL. DEV. = 24.1 DEGREES REMARK 500 ARG L 114 CD - NE - CZ ANGL. DEV. = 27.5 DEGREES REMARK 500 ARG L 114 NH1 - CZ - NH2 ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG L 114 NE - CZ - NH1 ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG L 114 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP L 157 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LEU L 166 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 ASP L 173 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP L 173 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP L 176 CB - CG - OD1 ANGL. DEV. = -12.0 DEGREES REMARK 500 LEU L 185 CA - CB - CG ANGL. DEV. = 24.1 DEGREES REMARK 500 LEU L 187 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 GLU L 191 CB - CG - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 GLU L 191 CG - CD - OE1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG L 194 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASN L 196 CA - CB - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 ILE L 211 CB - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 LYS L 213 N - CA - CB ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG L 217 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLU H 1 OE1 - CD - OE2 ANGL. DEV. = 11.4 DEGREES REMARK 500 GLU H 6 CG - CD - OE1 ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG H 19 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG H 19 NH1 - CZ - NH2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG H 19 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 CYS H 22 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP H 31 CB - CG - OD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 MET H 34 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG H 38 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG H 44 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG H 44 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ILE H 48 CA - C - N ANGL. DEV. = 14.3 DEGREES REMARK 500 ASN H 56 OD1 - CG - ND2 ANGL. DEV. = 15.0 DEGREES REMARK 500 ASN H 56 CB - CG - OD1 ANGL. DEV. = -12.4 DEGREES REMARK 500 GLU H 61 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 15 137.35 85.23 REMARK 500 CYS L 23 103.40 -162.76 REMARK 500 GLN L 35 81.70 62.25 REMARK 500 PHE L 38 69.76 -101.90 REMARK 500 LEU L 53 -66.31 -106.29 REMARK 500 GLU L 129 -39.41 -36.41 REMARK 500 THR L 132 39.49 -56.09 REMARK 500 SER L 133 9.85 -168.48 REMARK 500 ALA L 136 118.95 -163.07 REMARK 500 ASP L 157 -66.96 -130.43 REMARK 500 ARG L 161 156.67 155.30 REMARK 500 GLN L 162 -174.74 176.81 REMARK 500 LEU L 187 -158.58 -113.16 REMARK 500 GLU L 193 21.57 -67.14 REMARK 500 ARG L 194 -70.55 -92.75 REMARK 500 HIS L 195 -168.78 -76.42 REMARK 500 ASN L 196 -9.71 -163.46 REMARK 500 ARG L 217 167.74 167.46 REMARK 500 ASN L 218 -35.89 158.27 REMARK 500 SER H 30 19.62 -54.61 REMARK 500 ASP H 31 35.67 179.04 REMARK 500 ILE H 48 -104.65 -125.69 REMARK 500 LYS H 54 68.34 -56.97 REMARK 500 LYS H 57 124.92 66.41 REMARK 500 TYR H 58 65.68 -64.87 REMARK 500 SER H 79 42.47 76.60 REMARK 500 GLU H 123 -173.22 -56.33 REMARK 500 PRO H 137 63.01 -54.32 REMARK 500 ALA H 138 8.27 -159.40 REMARK 500 ASP H 142 124.96 65.97 REMARK 500 ASP H 152 85.92 61.30 REMARK 500 LYS H 168 -92.20 -58.05 REMARK 500 ILE H 170 109.90 167.47 REMARK 500 ALA H 180 -141.59 -89.73 REMARK 500 CYS H 198 54.93 -162.24 REMARK 500 PRO H 199 -119.20 -57.92 REMARK 500 GLU H 202 -98.53 -98.76 REMARK 500 SER H 203 149.29 112.54 REMARK 500 ASP H 211 -123.34 42.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 161 0.11 SIDE CHAIN REMARK 500 ARG L 217 0.14 SIDE CHAIN REMARK 500 ARG H 19 0.09 SIDE CHAIN REMARK 500 ARG H 44 0.10 SIDE CHAIN REMARK 500 ARG H 126 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE L 2 10.61 REMARK 500 LYS H 54 12.71 REMARK 500 THR H 129 10.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 223 DBREF 1MCP L 1 220 GB 208622 AAA72671 2 221 DBREF 1MCP H 1 222 UNP P01789 HV20_MOUSE 1 122 SEQADV 1MCP ILE L 112 GB 208622 LEU 113 CONFLICT SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO SER SER LEU SER VAL SEQRES 2 L 220 SER ALA GLY GLU ARG VAL THR MET SER CYS LYS SER SER SEQRES 3 L 220 GLN SER LEU LEU ASN SER GLY ASN GLN LYS ASN PHE LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR GLY ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN ASN ASP HIS SER TYR PRO LEU THR PHE SEQRES 9 L 220 GLY ALA GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA SEQRES 10 L 220 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 L 220 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 L 220 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 L 220 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 L 220 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 L 220 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 L 220 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 222 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 222 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 H 222 PHE THR PHE SER ASP PHE TYR MET GLU TRP VAL ARG GLN SEQRES 4 H 222 PRO PRO GLY LYS ARG LEU GLU TRP ILE ALA ALA SER ARG SEQRES 5 H 222 ASN LYS GLY ASN LYS TYR THR THR GLU TYR SER ALA SER SEQRES 6 H 222 VAL LYS GLY ARG PHE ILE VAL SER ARG ASP THR SER GLN SEQRES 7 H 222 SER ILE LEU TYR LEU GLN MET ASN ALA LEU ARG ALA GLU SEQRES 8 H 222 ASP THR ALA ILE TYR TYR CYS ALA ARG ASN TYR TYR GLY SEQRES 9 H 222 SER THR TRP TYR PHE ASP VAL TRP GLY ALA GLY THR THR SEQRES 10 H 222 VAL THR VAL SER SER GLU SER ALA ARG ASN PRO THR ILE SEQRES 11 H 222 TYR PRO LEU THR LEU PRO PRO ALA LEU SER SER ASP PRO SEQRES 12 H 222 VAL ILE ILE GLY CYS LEU ILE HIS ASP TYR PHE PRO SER SEQRES 13 H 222 GLY THR MET ASN VAL THR TRP GLY LYS SER GLY LYS ASP SEQRES 14 H 222 ILE THR THR VAL ASN PHE PRO PRO ALA LEU ALA SER GLY SEQRES 15 H 222 GLY ARG TYR THR MET SER ASN GLN LEU THR LEU PRO ALA SEQRES 16 H 222 VAL GLU CYS PRO GLU GLY GLU SER VAL LYS CYS SER VAL SEQRES 17 H 222 GLN HIS ASP SER ASN PRO VAL GLN GLU LEU ASP VAL ASN SEQRES 18 H 222 CYS HET SO4 H 223 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *138(H2 O) HELIX 1 1 SER L 127 THR L 132 1 6 HELIX 2 2 LYS L 189 GLU L 193 1 5 HELIX 3 3 ARG H 89 THR H 93 5 5 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 SER L 25 -1 N SER L 22 O SER L 7 SHEET 3 A 4 ASP L 76 ILE L 81 -1 O PHE L 77 N CYS L 23 SHEET 4 A 4 PHE L 68 SER L 73 -1 O THR L 69 N THR L 80 SHEET 1 B 2 SER L 10 VAL L 13 0 SHEET 2 B 2 LYS L 109 ILE L 112 1 O LYS L 109 N LEU L 11 SHEET 1 C 5 THR L 59 ARG L 60 0 SHEET 2 C 5 LYS L 51 TYR L 55 -1 O TYR L 55 N THR L 59 SHEET 3 C 5 LEU L 39 GLN L 44 -1 O TRP L 41 N LEU L 53 SHEET 4 C 5 VAL L 91 ASN L 96 -1 O VAL L 91 N GLN L 44 SHEET 5 C 5 THR L 103 PHE L 104 -1 O THR L 103 N ASN L 96 SHEET 1 D 4 THR L 120 PHE L 124 0 SHEET 2 D 4 GLY L 135 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 D 4 TYR L 179 THR L 188 -1 N TYR L 179 O PHE L 145 SHEET 4 D 4 VAL L 165 TRP L 169 -1 N LEU L 166 O THR L 184 SHEET 1 E 3 ASN L 151 LYS L 155 0 SHEET 2 E 3 SER L 197 THR L 203 -1 N THR L 199 O LYS L 155 SHEET 3 E 3 ILE L 211 ASN L 216 -1 N ILE L 211 O ALA L 202 SHEET 1 F 4 LYS H 3 SER H 7 0 SHEET 2 F 4 SER H 17 SER H 25 -1 N SER H 21 O SER H 7 SHEET 3 F 4 ILE H 80 ASN H 86 -1 N LEU H 81 O CYS H 22 SHEET 4 F 4 PHE H 70 ASP H 75 -1 N ILE H 71 O GLN H 84 SHEET 1 G 4 GLU H 46 ALA H 50 0 SHEET 2 G 4 TYR H 33 GLN H 39 -1 O TRP H 36 N ILE H 48 SHEET 3 G 4 ALA H 94 TYR H 103 -1 O ILE H 95 N GLN H 39 SHEET 4 G 4 TRP H 107 TRP H 112 -1 N TYR H 108 O TYR H 102 SHEET 1 H 5 GLU H 46 ALA H 50 0 SHEET 2 H 5 TYR H 33 GLN H 39 -1 O TRP H 36 N ILE H 48 SHEET 3 H 5 ALA H 94 TYR H 103 -1 O ILE H 95 N GLN H 39 SHEET 4 H 5 THR H 116 VAL H 120 -1 O THR H 116 N TYR H 96 SHEET 5 H 5 LEU H 11 VAL H 12 1 N VAL H 12 O THR H 119 SHEET 1 I 4 THR H 129 LEU H 133 0 SHEET 2 I 4 VAL H 144 TYR H 153 -1 O GLY H 147 N LEU H 133 SHEET 3 I 4 TYR H 185 LEU H 193 -1 N TYR H 185 O TYR H 153 SHEET 4 I 4 THR H 171 ASN H 174 -1 O THR H 171 N THR H 192 SHEET 1 J 4 THR H 129 LEU H 133 0 SHEET 2 J 4 VAL H 144 TYR H 153 -1 O GLY H 147 N LEU H 133 SHEET 3 J 4 TYR H 185 LEU H 193 -1 N TYR H 185 O TYR H 153 SHEET 4 J 4 ALA H 178 LEU H 179 -1 N ALA H 178 O THR H 186 SHEET 1 K 3 MET H 159 TRP H 163 0 SHEET 2 K 3 VAL H 204 HIS H 210 -1 N SER H 207 O THR H 162 SHEET 3 K 3 GLN H 216 VAL H 220 -1 O GLN H 216 N VAL H 208 SSBOND 1 CYS L 23 CYS L 94 1555 1555 2.00 SSBOND 2 CYS L 140 CYS L 200 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 98 1555 1555 2.00 SSBOND 4 CYS H 148 CYS H 206 1555 1555 2.03 SSBOND 5 CYS H 198 CYS H 222 1555 1555 1.94 CISPEP 1 SER L 7 PRO L 8 0 -4.69 CISPEP 2 TYR L 100 PRO L 101 0 1.05 CISPEP 3 TYR L 146 PRO L 147 0 -2.30 CISPEP 4 ASP H 142 PRO H 143 0 -1.24 CISPEP 5 PHE H 154 PRO H 155 0 2.22 SITE 1 AC1 4 TYR H 33 ARG H 52 HOH H 236 TYR L 100 CRYST1 162.531 162.531 60.719 90.00 90.00 120.00 P 63 6 ORIGX1 0.866025 0.500000 0.000000 0.00000 ORIGX2 -0.500000 0.866025 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006153 0.003552 0.000000 0.00000 SCALE2 0.000000 0.007104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016469 0.00000